Introduction to Weka
Xingquan (Hill) Zhu
Slides copied from Jeffrey Junfeng Pan (UST)
Outline
Weka
Data Source
Feature selection
Model building
Classifier / Cross Validation
Result visualization
WEKA
[Link]
Data mining software in Java
Open source software
UCI Data Repository
[Link]
[Link]
Explorer: pre-processing the data
Data can be imported from a file in various
formats: ARFF, CSV, C4.5, binary
Data can also be read from a URL or from an
SQL database (using JDBC)
Pre-processing tools in WEKA are called
filters
WEKA contains filters for:
Discretization, normalization, resampling, attribute
selection, transforming and combining attributes,
WEKA only deals with flat files
@relation heart-disease-simplified
@attribute age numeric
@attribute sex { female, male}
@attribute chest_pain_type { typ_angina, asympt, non_anginal, atyp_angina}
@attribute cholesterol numeric
@attribute exercise_induced_angina { no, yes}
@attribute class { present, not_present}
@data
63,male,typ_angina,233,no,not_present
67,male,asympt,286,yes,present
67,male,asympt,229,yes,present
38,female,non_anginal,?,no,not_present
...
WEKA only deals with flat files
@relation heart-disease-simplified
@attribute age numeric
@attribute sex { female, male}
@attribute chest_pain_type { typ_angina, asympt, non_anginal, atyp_angina}
@attribute cholesterol numeric
@attribute exercise_induced_angina { no, yes}
@attribute class { present, not_present}
@data
63,male,typ_angina,233,no,not_present
67,male,asympt,286,yes,present
67,male,asympt,229,yes,present
38,female,non_anginal,?,no,not_present
...
Explorer: attribute selection
Panel that can be used to investigate which (subsets of)
attributes are the most predictive ones
Attribute selection methods contain two parts:
A search method: best-first, forward selection, random,
exhaustive, genetic algorithm, ranking
An evaluation method: correlation-based, wrapper,
information gain, chi-squared,
Very flexible: WEKA allows (almost) arbitrary combinations of
these two
Explorer: building classifiers
Classifiers in WEKA are models for predicting
nominal or numeric quantities
Implemented learning schemes include:
Decision trees and lists, instance-based classifiers,
support vector machines, multi-layer perceptrons,
logistic regression, Bayes nets,
Meta-classifiers include:
Bagging, boosting, stacking, error-correcting output
codes, locally weighted learning,
Problem with Running Weka
Problem : Out of memory for large data set
Solution : java -Xmx1000m -jar [Link]
Outline
Weka
Data Source
Feature selection
Model building
Classifier / Cross Validation
Result visualization