Open Source Web Development Frameworks

The OpenHealhPractice Simulation Environment is a web framework intended to concurrently manage and launch generalized models. Models can be uploaded by the users and also can be connected to other models in order to simulate them in a row. These simulations are stored and can be reviewed or deleted at anytime. The Graphical Visualization Environment (GVE) provides the graphical visualization of the simulation results. Results can also be exported to different formats (xls, txt or csv). This simulation environment is built using Spring Framework and Java technologies. For more information on how to deploy and use the tool, check the installation and user manuals. This tool was developed within the Synergy project. You can view our publication about the Simulation Environment here: http://www.translational-medicine.com/content/12/S2/S7 The rest of the publication outcomes of the project can be found here: http://www.translational-medicine.com/supplements/12/S2

Coati is a web development framework and API for genome databases that supports multiple database vendors and database schemas.

IRSA is a toolkit for Information Retrieval Service Assessment. It builds upon the Grails Web Framework and is developed at GESIS. It implements two main functionalities: (1) A number of showcases that show the implemented services like a so-called Search Term Recommender and different science-model based ranking mechanisms and (2) an IR assessment module that let's one do an interactive evaluation of the retrieval services. All implemented services are available via well-documented RESTful API. This toolkit is distributed under an Apache License 2.0.

NG4J - 'Named Graphs API for Jena' is an extension to the Jena Semantic Web framework for parsing, manipulating and serializing sets of Named Graphs. For details about Named Graphs see http://www.w3.org/2004/03/trix/

Web application providing analysis of biomedical relationships. Built using the Grails web application framework (http://grails.org/) with MySQL (http://www.mysql.com/) as a back-end datastore and utilizing R (http://www.r-project.org/) for statistical analysis. Developed by the Dana Farber Cancer Institute (http://compbio.dfci.harvard.edu/) and Entagen (http://www.entagen.com).

The Virtual Commons (http://commons.asu.edu) is an open software initiative devoted to computational experiments on collective action and resource governance and funded by Arizona State University's Center for Behavior, Institutions, and the Environment (http://cbie.asu.edu). NOTE: we've moved our development to GitHub at https://github.com/virtualcommons - please look for the latest versions there.

A translator that converts information models written in ISO-10303-11 EXPRESS to DAML+OIL/OWL (e2ont). The software extends the OSEXPRESS parser. DAML+OIL or OWL code is obtained using the Jena2 Semantic Web framework.