Open Source Linux Research Software

This software is a Perl Catalyst based electronic lab notebook (ELN) aiming for small biologic laboratories, that have no funding to invest into a closed source ELN.

Biomedical Information Management System (BIMS) is a modular multilayer object - oriented software architecture, which provides a flexible computational solution to capture and manage a heterogeneous biomedical data: textual and visual information.

The Centre d'Informations (CI) aim is to articulate and display whatever type of knowledge available on a given field (see screenshots examples for various fields). The software is built as a network of information articulated using concepts (figure). The website should not be understood as a conventional search engine but as different ways to navigate within this knowledge (information and concept) network. Each information is thoroughly formalized; the aim is not exhaustivity or information amount but rather information quality so as to ensure the best possible articulation within the existing network (quality of the network) and ensure the subject diversity so as to cover the field with robustness.

Extreem Reader for Cosmological simulation data P-Gadet2 and ART codes.It conserves memory by using memory mapped files. Contains some basic analysis tools such a KD-Tree, Minimum Spanning Tree, and rendering module using PMViewer algorithm.

The Key Store is a directory where users can find the symbolic meaning to a word as defined in Holy Scripture. These are often referred to as the keys of the Kingdom of Heaven. Much like a secret code, the directory exposes a universal dialect, all but nearly lost throughout the Dark Ages of time. Yet, fragments of this language remained until today such as, Father = Time and Mother = Nature. The database is expandable to grow as more entries and the sources are uncovered.

Ruby Research Wiki (RRiki) can be used to keep notes and organize references for research. It uses a browser interface, an intuitive plain text formatting language (markdown), and facilities to cross-reference and hierarchically organize notes

New computer science theory. OO databases generated with TROM are as relational and normalised as you specify. Predefine queries to be executed at the click of a button, or enter ad-hoc SQL statements. TROM is the future of OO relational databases.

The Semantic Web implementation using native xml database as backend storage. A SPARQL java compiler to XQuery using Jena. There are XQuery scripts for native xml database Sedna(http://modis.ispras.ru/sedna/).