Open Source C# Data Analytics Tools

PANDA is a comprehensive and flexib tool for quantitative proteomics data analysis, which is developed based on our solid foundations in quantitative proteomics for years. Several novelties have been implemented in it. First, we implement the advantage algorithms of LFQuant (Proteomics 2012, 12, (23-24), 3475-84) and SILVER (Bioinformatics 2014, 30, (4), 586-7) into PANDA. Second, we consider the state-of-art concept of quantification reliability in this quantitative workflow. On the levels of spectra, peptides and proteins, PANDA works out a few quantitative filters and new scores for quantification confidence. Third, PANDA is designed for processing proteomics big data in parallel.

JARI (Just Another R Interface) is a comprehensive data science desktop suite engineered to guide researchers, students, and analysts through the entire data analysis lifecycle. By pairing a structured workflow with automated R code generation, JARI allows users to conduct rigorous statistical analysis without struggling with syntax—while keeping the full power of custom R scripting accessible for advanced users