Open Source Command Line Tools

C3D is a command-line tool for converting 3D images between common file formats. The tool also includes a growing list of commands for image manipulation, such as thresholding and resampling.

Arduino CLI is an all-in-one solution that provides Boards/Library Managers, sketch builders, board detection, uploader, and many other tools needed to use any Arduino compatible board and platform from the command line or machine interfaces. In addition to being a standalone tool, Arduino CLI is the heart of all official Arduino development software (Arduino IDE, Arduino Web Editor). The script requires sh, which is always available on Linux and macOS. sh is not available by default on Windows, though it is available as part of Git for Windows (Git Bash). If you don't have sh available, use the "Download" installation option. If you would like to use the arduino-cli command from any location, install Arduino CLI to a directory already in your PATH or add the Arduino CLI installation path to your PATH environment variable.

Gerber2PDF is a command-line tool to convert Gerber files to PDF for proofing and hobbyist printing purposes. It converts multiple Gerber files at once, placing the resulting layers each on it's own page within the PDF. Each layer has a PDF bookmark for easy reference. Layers can optionally be combined onto a single page and rendered with custom colours and transparency. There is a Drill to Gerber converter available from the downloads page.

The project development has been moved on GitHub https://github.com/pcb2gcode/pcb2gcode The GUI for pcb2gcode can be found here https://github.com/pcb2gcode/pcb2gcodeGUI pcb2gcode is a command-line tool for isolation, routing and drilling of PCBs that provides full support for both single- and double-sided boards. For more information, see http://sourceforge.net/apps/mediawiki/pcb2gcode/

CSV Comparator is a tool for comparing files which contain CSV-Data. It was created for performance engineers to be able to have a easy way to compare data from two testruns and be able to automate the comparing process of various files with scripts. There is a command line tool as well as a user interface. In case you need to compare .xml-Files you can convert them to .csv-Files with my other project CSV Transformer. The advantages by using CSV as input and output are the following: - Many applications allow an export of its data to CSV or Excel(were it could be saved to CSV) - It is possible to pre- and postprocess the data, e.g removing version numbers before comparing - It is easy to create CSV data from logfiles and other resources by using unix tools like sed or awk - CSV can be loaded into other applications, especially Excel, were it can be formatted by macros for analyzing.

Mesh2HRTF is an open-source project aiming at providing an easy-to-use software package for the numerical calculation of HRTFs. It targets researchers in the field of binaural audio. In a nutshell, Mesh2HRTF simply reads geometrical data, calculates the corresponding sound field and outputs HRTFs. To support multiple computer platforms, the concept of Mesh2HRTF is to focus on a command-line tool, which forms the numerical core, i.e., an implementation of the 3-dimensional Burton-Miller collocation BEM coupled with the multi-level fast multipole method (ML-FMM), and to provide add-ons for existing cross-platform applications for the preprocessing of geometrical data and for the visualization of results.

Simple command-line tool to download/upload firmware to/from STM32 MCU with factory preprogrammed serial bootloader. Look <a href="http://openfacts2.berlios.de/wikien/index.php/BerliosProject:STM%20Flasher">wiki</a> for more info.

Diva is a command-line tool for dispersal-vicariance analysis, a simple method for inferring the distributional history of organisms (Ronquist, F. 1997. Systematic Biology 46:193-201).

ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract

A command line tool that allows a semi-automated scientific articles management. It assumes an existence of a directory of a specific format in the file system. The tool interprets the data stored in the directory (called a repository), extend it via the usage of some automatic tools such as pdftotext, and search the text as well as some metadata.

If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).

Command line tool to generate Gcode for CNC applications from DXF files. Originally written for 2-axis machines such as foam cutters, it now supports 3-axis machines.

An implementation of Dantzig-Wolfe decomposition built upon the GNU Linear Programming Kit. This is a command line tool for solving properly decomposed linear programs. There are several examples and some documentation to guide the use of this solver. Forked over to GitHub (see link).

Elastolix takes any 2 of 6 elastic moduli and calculates the remaining 4. There is a command line tool, named elastolix and a tool with a graphical user interface made with lazarus. Releases for macOS will always be first, others should always follow shortly after.

FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ

FNA is a command line tool for creating and analyzing financial networks with concepts developed in social network analysis and network science. NOTE: the project has been moved to http://code.google.com/p/financial-network-analyzer/

Gebabbel is a GUI for the famous gpsbabel, a command line tool to convert various GPS file formats back and forth. Thanks to gpsbabel, you cannot only convert files but also exchange data with your GPS device (e.g. Garmin and Magellan) directly.

H9A is an installable Python package that counts how many times a given digit appears in a range of numbers (by default: the digit 9 between 1 and 100). It provides both a h9a command-line tool and an importable library, and it prints each step of the calculation — the per-place counts and the combined total — as styled, colorized output. It is built with rich for console formatting, pyfiglet for an ASCII-art banner, and Pillow for optional terminal-style screenshots.

Input 1 - A training dataset (multiple observations) of up to four variables (predictors) against one (response variable) Input 2 - A test dataset (multiple observations) of the same four variables with unknown response variable Output - Calculation of the response variable for each test observation using fuzzy logic or fuzzy rule-based Bayesian algorithms HABFUZZ is a habitat model, which can be used in ecohydraulic modelling applications for the calculation of the instream habitat suitability in various discharge scenarios in a simulated river reach. It comes with no graphical user interface but it's a one-click tool. Just provide your input and let HABFUZZ provide you the output. The HABFUZZ manual https://github.com/chtheodoro/habfuzz/blob/master/HABFUZZ_v2.5_manual.pdf HABFUZZ in the Journal of Open Source Software http://joss.theoj.org/papers/1ad27db8f0976c28a75e20d34eba5ee2 HABFUZZ website https://chtheodoro.wixsite.com/habfuzz

A command-line tool for numerical reconstruction of digital holograms (formerly known as "HoloPlay")

IMG2GSLIB is a small command line tool that converts images to grids into GEO-EAS format readable by geoscientific software such as GSLIB, SGeMS, Isatis, Gocad, Petrel, etc. It now can output 3D volumes from image stacking. The ASCII result is sent to stdout, so you can redirect it using the > operator if you want to save it to a file. Run java -jar IMG2GSLIB.jar without arguments to get help on usage. Requirements: -Java 1.7

IntiMap is a convenience tool to run the MS-DOS command-line tool MapPop for selective genotyping. It adds facilities to prepare genotyping data files, manage genotype sets and visualize mapping results (genetic marker maps).

J2ObjC is an open-source command-line tool from Google that translates Java source code to Objective-C for the iOS (iPhone/iPad) platform. This tool enables Java source to be part of an iOS application's build, as no editing of the generated files is necessary. The goal is to write an app's non-UI code (such as application logic and data models) in Java, which is then shared by web apps (using GWT), Android apps, and iOS apps. J2ObjC supports most Java language and runtime features required by client-side application developers, including exceptions, inner and anonymous classes, generic types, threads and reflection. JUnit test translation and execution is also supported. J2ObjC cannot convert Android binary applications. Developers must have source code for their Android app, which they either own or are licensed to use.

At the moment its simple command line tool to create nice looking schematic libraries in kicad. I hope that it would be usefull for someone. dont need to click anything just write/paste pin names and thats it.

This is a small and fast library and command-line tool for manipulation of logic/boolean-algebra expressions, including proofing and simplification. A front-end using tigcc for Texas Instruments calculators is planned, too.