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AnimalAnatomicalStructure

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Animal anatomical structures, including body parts and organs.

Entity["AnimalAnatomicalStructure",name] or

represents an entity of type "AnimalAnatomicalStructure".

[prop]

gives the value of a specified property.

[{propi,…}]

gives the value of a list of properties.

[prop,{qualivali,…}]

gives the value of a specified property modified by qualifier rules quali->vali.

EntityClass["AnimalAnatomicalStructure",{propispeci,…}]

represents a class of entities with values of propi defined by speci.

Sample Entities

  • …

Properties

  • AdjacentJointCountadjacent joint count
    AdjacentJointsadjacent joints
    AnatomicalGroupanatomical groups
    ArticulatingBonesarticulating bones
    AssociatedSpeciesassociated species
    BilateralComponentsbilateral components
    BodyLocationImagebody location image
    BodySidebody side
    BoneArticulationbone articulation
    BoneArticulationCountbone articulation count
    ConstitutionalPartsconstitutional parts
    ContextualizingEntitycontextualizing entity
    CoronalPlanecoronal plane
    EnclosingCuboidenclosing cuboid
    EnclosingSphereenclosing sphere
    EnclosingSphereDiameterenclosing sphere diameter
    EnclosingSphereRadiusenclosing sphere radius
    EntityClassesentity classes
    EntityTypeListentity type list
    Graphics3D3D graphic
    Graphics3DPrimitives3D graphic primitives
    HomologousHumanStructureshomologous human structures
    HomologousStructureshomologous structures
    IncludedBoneCountbone count
    IncludedBonesbones
    IncludedMuscleCountmuscle count
    IncludedMusclesmuscles
    IncludedOrganCountorgan count
    IncludedOrgansorgans
    Membersmembers
    MeshAreamesh area
    MeshRegionmesh region
    MeshVolumemesh volume
    MinimumCentroidSphereminimum centroid sphere
    Namename
    Regionregion
    RegionalLocationHighlightedImageregional location highlighted image
    RegionalLocationImageregional location image
    RegionBoundsregion bounds
    RegionCentroidregion centroid
    SagittalPlanesagittal plane
    StructuralGroupstructural groups
    StructureTypestructure type
    SubLabelsub‐label
    SystemicGroupsystemic groups
    TransversePlanetransverse plane
    TypicalMorphologytypical morphology
    UMLSConceptIDUMLS concept ID

Details

  • "AnimalAnatomicalStructure" entities include animal body systems and organs, as well as individual bones and muscles.
  • Some properties are available for the "AnimalAnatomicalStructure" entity type as a whole and can be given using the form EntityValue["AnimalAnatomicalStructure",property]. Such properties include:
  • "Properties"the list of available properties
    "PropertyCanonicalNames"the standard names of available properties
    "SampleEntities"a sample list of available entities (typically of length 10)
    "SampleEntityClasses"a sample list of available entity classes (typically of length 10)
    "EntityCount"number of entities available
    "Entities"the list of available entities
    "EntityCanonicalNames"the standard names of available entities
    "EntityClasses"the list of available entity classes
    "EntityClassCanonicalNames"the standard names of available entity classes
    "PropertyClasses"the list of available property classes
    "PropertyClassCanonicalNames"the standard names of available property classes
    "PropertyCount"number of properties available
  • The following annotations can be used in the third argument of EntityValue["AnimalAnatomicalStructure",property,annotation]:
  • "Source"source information for the property
    "Date"the date associated with the entity-property value (if any)
    "EntityAssociation"an association of entities and entity-property values
    "PropertyAssociation"an association of properties and entity-property values
    "EntityPropertyAssociation"an association in which the specified entities are keys, and values are a nested association of properties and entity-property values
    "PropertyEntityAssociation"an association in which the specified properties are keys, and values are a nested association of entities and entity-property values
    "Dataset"a dataset in which the specified entities are keys, and values are an association of property names and entity-property values
  • The following annotations can be used in the second argument of EntityValue[property,annotation]:
  • "Qualifiers"the list of possible qualifiers for the property
    "QualifierValues"the list of possible values that can be given to each qualifier
    "DefaultQualifierValues"the list of default values for the property's qualifiers
    "Description"a brief textual description of the property
    "Definition"a detailed textual definition of the property
    "PhysicalQuantity"the physical quantity associated with the entity-property value
    "Unit"the unit associated with the entity-property value
  • A qualifier value of Automatic indicates that an applicable format of values can be used; e.g. for the "Date" qualifier, this includes a proper date or date span.

Examples

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Basic Examples  (4)

Use for entity discovery:

Wolfram Language code: ["dog liver"]

Find a property value for an entity:

Wolfram Language code: Entity["AnimalAnatomicalStructure", "Femur::CanisLupusFamiliaris::4t62p"]["BoneArticulation"]

Retrieve a dataset of all available properties for an entity:

Wolfram Language code: ["dog biceps"]["Dataset"]

Find the organs of the horse digestive system:

Wolfram Language code: EntityList[EntityClass["AnimalAnatomicalStructure", "SystemicGroup" -> MemberQ[Entity["AnimalAnatomicalStructure", "AlimentarySystem::EquusCaballus::9ycwb"]]]]

Scope  (3)

Visualize an entity:

Wolfram Language code: Entity["AnimalAnatomicalStructure", "Brain::EquusCaballus::9ycwb"]["TypicalMorphology"]

Locate an entity in the body:

Wolfram Language code: Entity["AnimalAnatomicalStructure", "Organ::EquusCaballus::9ycwb"]["BodyLocationImage"]

Highlight an entity in a body region:

Wolfram Language code: Entity["AnimalAnatomicalStructure", "ThirdMetatarsalBone::CanisLupusFamiliaris::4t62p"]["RegionalLocationHighlightedImage"]

Compute a mesh region:

Wolfram Language code: ["horse right femur"]["MeshRegion"]

Applications  (1)

Find muscles of the forelimb and visualize them:

Wolfram Language code: Entity["AnimalAnatomicalStructure", "LeftForelimb::CanisLupusFamiliaris::4t62p"]["IncludedMuscles"]//Shallow
Wolfram Language code: AnatomyPlot3D[{AnatomyStyling[<|Entity["AnimalAnatomicalStructure", "Muscle::CanisLupusFamiliaris::4t62p"] -> Blue|>], Entity["AnimalAnatomicalStructure", "LeftForelimb::CanisLupusFamiliaris::4t62p"]}, ViewPoint -> Right]

Relations to Other Entity Types  (1)

Find the homologous human structure:

Wolfram Language code: Entity["AnimalAnatomicalStructure", "ProximalPhalanxOfForelimb::EquusCaballus::9ycwb"]["HomologousHumanStructures"]

Neat Examples  (1)

Visualize human, dog and horse feet in x-ray style and highlight the calcaneus:

Wolfram Language code: GraphicsRow[Map[AnatomyPlot3D[{AnatomyStyling[<|#[[1]] -> Directive[Red, Opacity[1]]|>], #[[2]]}, PlotTheme -> "XRay", ViewPoint -> Right]&, {{Entity["AnatomicalStructure", "LeftCalcaneus"], Entity["AnatomicalStructure", "LeftFoot"]}, {Entity["AnimalAnatomicalStructure", "LeftCalcaneus::CanisLupusFamiliaris::4t62p"], Entity["AnimalAnatomicalStructure", "LeftHindfoot::CanisLupusFamiliaris::4t62p"]}, {Entity["AnimalAnatomicalStructure", "LeftCalcaneus::EquusCaballus::9ycwb"], Entity["AnimalAnatomicalStructure", "LeftHindfoot::EquusCaballus::9ycwb"]}}], Background -> GrayLevel[.1]]