Stars
A PyTorch Basecaller for Oxford Nanopore Reads
Methylation/modified base calling separated from basecalling.
A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
tools and notes for long reads analysis
T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.
Advanced Python Mastery (course by @dabeaz)
Meta-package for data analysis in Julia, modeled after the R tidyverse.
Code Repository for Machine Learning with PyTorch and Scikit-Learn
This is the official repository for the "doggo dot jl" YouTube channel (fka "julia for talented amateurs").
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
The simplest, fastest repository for training/finetuning medium-sized GPTs.
Tidier data visualization in Julia, modeled after the ggplot2 R package.
A tool to build a website to browse hundreds or thousands of GWAS.
This repository houses scripts for training genetic scores of omic traits in INTERVAL
This is where TOG houses all of its workshop scripts, as well as details on its upcoming workshops and seminars.
Metaprogramming tools for DataFrames
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
Port of Statistical Rethinking (2nd edition) code to Julia
Statistical Rethinking course winter 2022
🔓 anti proxy/firewall setup using git repo mirrors of package archives. (local melpa)
library of C++ functions that support applications of Stan in Pharmacometrics
Bayesian Data Analysis course at Aalto
Materials for MIT 6.S083 / 18.S190: Computational thinking with Julia + application to the COVID-19 pandemic