Lists (3)
Stars
An awesome list of resources for Research Software Engineers and Engineering (RSE)
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
Scientific Inkscape: Inkscape extensions for figure resizing and editing
The Experiments Metadata Standard Group focuses on defining a minimal set of metadata properties for genomic datasets, to make them usable in primarily in a discovery context.
MountainSort spike sorting algorithm, version 5
RDM4mic working group - research data management for microscopy data
Training and evaluating encoding models to predict fMRI brain responses to naturalistic video stimuli
DeepLabCut based data analysis package including pose estimation and representation learning mediated behavior recognition
Well defined metadata instances for selected schemas of the openMINDS metadata models.
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
The Terminology Service Suite project is a collection of interactive widgets designed to ease the integration of terminology service functions into third-party applications.
Software platform for clinical neuroimaging studies
A short tutorial for data description, summary, and validation in R.
Tutorials for the siibra toolsuite - software interface for brain atlases.
This repository is for the EBRAINS users day 2025, Heidelberg, Germany. https://flagship.kip.uni-heidelberg.de/jss/HBPm?m=SgD&mI=268
awesome open list of pointers about open science for software and computational science
Awesome list of Research Software Registries
A metadata model for capturing in-depth descriptions of electrophysiology experiments.
A tool to generate openMINDS metadata from BIDS datasets
A Python API for working with Neurodata stored in the NWB Format
Python toolkit for working with high-dimensional neural data recorded during naturalistic, continuous stimuli @a-darcher @rachrapp