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@friendsofstrandseq @deepPipelines @marschall-lab @hgsvc @core-unit-bioinformatics @HHU-ZDM

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Foreign Contamination Screening caller scripts and documentation

157 22 Updated Mar 18, 2025

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

C++ 583 174 Updated May 13, 2025

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

246 59 Updated Nov 28, 2022

A game theoretic approach to explain the output of any machine learning model.

Jupyter Notebook 25,091 3,478 Updated Mar 4, 2026

Searchable Files; a demo application using Globus Search

Python 5 2 Updated Mar 2, 2026

Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API

Python 27 1 Updated Oct 20, 2023