Use Claude Code, Cursor CLI or Codex on mobile and web with CloudCLI (aka Claude Code UI). CloudCLI is a free open source webui/GUI that helps you manage your Claude Code session and projects remotely

An efficient CLI to extract sequences from the SRA

Assorted git tools, including git-restore-mtime

WFA-lib: Wavefront alignment algorithm library v2

macOS app and file launching springboard

Same species annotation lift over pipeline.

Eukaryotic genome annotation software.

Google Sheets Python API

An accurate GFF3/GTF lift over pipeline

Convert various sequence formats to FASTA

An Obsidian plugin for interfacing with Semantic Markdown

Foam low-code for coders app development framework

Render ASCII art as SVG diagrams

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Content Addressible Storage

Cita: a Wikidata addon for Zotero with citations metadata support

GenomeTools genome analysis system.

Docker image of JBrowse Genome Browser

Performs multiple spliced alignments in a progressive way.

A fork of exonerate: a generic tool for sequence alignment

Align proteins to genomes with splicing and frameshift

R tools for Agilent electrophoresis data

Apptainer: Application containers for Linux

PlasmidMaker is a versatile, automated, and high throughput end-to-end platform for plasmid construction

Tools for processing data generated by the Search SRA

ApE- A plasmid Editor

Laboratory Open Protocol (LabOP) Language

The successor of GNU Wget. Contributions preferred at https://gitlab.com/gnuwget/wget2. But accepted here as well 😍

Nanopore Plasmid Sequencing

Convert OneNote files to HTML