Skip to content
Change the repository type filter

All

    Repositories list

    • Repo to add announcements on the OOD dashboard
      0000Updated Jan 1, 2026Jan 1, 2026
    • coldfront

      Public
      HPC Resource Allocation System
      Python
      1031308Updated Dec 23, 2025Dec 23, 2025
    • puppet module to configure slurm
      Python
      0000Updated Dec 22, 2025Dec 22, 2025
    • slurm.spec for building slurm rpms at FASRC
      0000Updated Dec 19, 2025Dec 19, 2025
    • Python
      5000Updated Dec 16, 2025Dec 16, 2025
    • Open OnDemand Jupyter app
      HTML
      0000Updated Dec 16, 2025Dec 16, 2025
    • Python
      5200Updated Dec 15, 2025Dec 15, 2025
    • modules

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      951000Updated Dec 13, 2025Dec 13, 2025
    • spatialvi

      Public
      Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
      Nextflow
      28000Updated Dec 12, 2025Dec 12, 2025
    • Ruby
      7000Updated Dec 11, 2025Dec 11, 2025
    • Prints some user Slurm stats on login.
      Python
      1100Updated Dec 9, 2025Dec 9, 2025
    • An Jupyter plugin to enable the automatic detection of conda and virtualenv environments as kernels.
      Python
      17000Updated Dec 9, 2025Dec 9, 2025
    • Jupyter Notebook
      198874Updated Dec 5, 2025Dec 5, 2025
    • Prometheus Exporter for Slurm
      Python
      3300Updated Dec 4, 2025Dec 4, 2025
    • Various useful slurm scripts
      Jupyter Notebook
      0000Updated Dec 3, 2025Dec 3, 2025
    • scrnaseq

      Public
      Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
      Nextflow
      206000Updated Dec 3, 2025Dec 3, 2025
    • FASRC specific configuration for Reframe
      C
      0000Updated Dec 1, 2025Dec 1, 2025
    • Ruby
      5000Updated Dec 1, 2025Dec 1, 2025
    • Conda recipes for the bioconda channel.
      Shell
      3.7k000Updated Nov 25, 2025Nov 25, 2025
    • Codes to stress test nodes - use caution!!
      Shell
      0000Updated Nov 21, 2025Nov 21, 2025
    • helmod

      Public
      Harvard Extensions for Lmod deployment
      Ruby
      62840Updated Nov 18, 2025Nov 18, 2025
    • RStudio Server app for Open OnDemand
      HTML
      0000Updated Nov 14, 2025Nov 14, 2025
    • Open OnDemand CryoSPARC app (containerized, single-node, accessed via OOD Remote Desktop or local web browser + SSH port forwarding)
      HTML
      2000Updated Nov 7, 2025Nov 7, 2025
    • Identify and reduce instances of underutilization by the users of high-performance computing systems
      Python
      4000Updated Nov 5, 2025Nov 5, 2025
    • podman

      Public
      Puppet module for podman
      Ruby
      41000Updated Oct 28, 2025Oct 28, 2025
    • OnDemand app to deploy Containerized Remote Desktop GUI as interactive instance on compute nodes on the FASRC clusters
      HTML
      0000Updated Oct 7, 2025Oct 7, 2025
    • OnDemand app to deploy Remote Desktop GUI as interactive instance on compute nodes on the FASRC clusters
      HTML
      0000Updated Oct 7, 2025Oct 7, 2025
    • ood-knime

      Public
      OnDemand App to deploy Knime GUI as interactive instance on compute nodes on the FASRC clusters
      HTML
      0000Updated Oct 7, 2025Oct 7, 2025
    • OnDemand App to deploy Matlab GUI as interactive instance on compute nodes on the FASRC clusters
      Shell
      0000Updated Oct 7, 2025Oct 7, 2025
    • HeavyAI app for Open OnDemand
      HTML
      0000Updated Oct 6, 2025Oct 6, 2025