User friendly and accurate binder design pipeline

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

AI-generated gene editing systems

WebAssembly modules for genomics

Molstar PDBe implementation

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted stru…

Advanced Python Mastery (course by @dabeaz)

A python package to predict CRISPR-Cas PAMs

A high-level app and dashboarding solution for Python

The Crystal Programming Language

WebAssembly runtime for Crystal

List of software/websites/databases/other stuff for genome engineering

Yet another markdown parser, Compliant to CommonMark specification, written in Crystal.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Automatically Visualize any dataset, any size with a single line of code. Created by Ram Seshadri. Collaborators Welcome. Permission Granted upon Request.

Multi-backend syntax highlighter for Crystal

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

A simple command-line tool to download data from the Joint Genome Institute's database

VCF files of SVs using long-read sequencing (LRS).

Crystal library for Data Analysis, Wrangling, Munging

Scientific computing in pure Crystal