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Dennis Lab

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  1. CiFi CiFi Public

    Pipeline for processing and analyzing CiFi data

    Shell 4

  2. HSD_brain_evolution HSD_brain_evolution Public

    R 1

  3. snake-chipseq snake-chipseq Public

    Workflow used in Shew et al. to call peaks in duplicated regions.

    Shell

  4. snake-fastcn snake-fastcn Public

    Python

  5. public_data public_data Public

    Repository for links to publicly available data from Dennis lab publications

  6. t2t-variants t2t-variants Public

    Jupyter Notebook 1

Repositories

Showing 10 of 12 repositories
  • CiFi Public

    Pipeline for processing and analyzing CiFi data

    mydennislab/CiFi’s past year of commit activity
    Shell 4 0 0 0 Updated Nov 4, 2025
  • 2024-sep-mapqfilter Public
    mydennislab/2024-sep-mapqfilter’s past year of commit activity
    C++ 0 0 0 0 Updated Oct 1, 2025
  • 2025-cifi-insilico-titration-asm Public

    How much CiFi do we need to produce highly contiguous assembly?

    mydennislab/2025-cifi-insilico-titration-asm’s past year of commit activity
    Python 0 0 0 0 Updated Sep 30, 2025
  • HSD_brain_evolution Public
    mydennislab/HSD_brain_evolution’s past year of commit activity
    R 1 0 0 0 Updated Aug 5, 2025
  • 2025-khoe-san-novel Public
    mydennislab/2025-khoe-san-novel’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 9, 2025
  • hpc-notes Public
    mydennislab/hpc-notes’s past year of commit activity
    0 0 0 0 Updated May 4, 2025
  • Long_read_RNA_seq Public
    mydennislab/Long_read_RNA_seq’s past year of commit activity
    0 0 0 0 Updated Feb 4, 2025
  • GYPA Public
    mydennislab/GYPA’s past year of commit activity
    Python 0 0 0 0 Updated Aug 20, 2024
  • public_data Public

    Repository for links to publicly available data from Dennis lab publications

    mydennislab/public_data’s past year of commit activity
    0 0 0 0 Updated Apr 4, 2024
  • t2t-variants Public
    mydennislab/t2t-variants’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 24, 2021
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