Whole cell model of E. coli implemented with Vivarium

The SPIFFE Runtime Environment

Bootstrap Kubernetes the hard way. No scripts.

Terraform module for creating Kubernetes cluster running on Container Linux by CoreOS in an AWS VPC

A small client application that uses the Duo Labs EFIgy API to inform you about the state of your Mac EFI firmware

Virtual Cell integration for ImageJ ** MOVED: https://github.com/virtualcell/vcell

Virtual Cell solvers

implementation of ImageDatasetService thrift interface (optionally used by VCell if separately installed)

Virtual Cell Framework

OpenVnmrJ. Build tools and instructions are at ovjTools.

Snoopy Command Logger is a small library that logs all program executions on your Linux/BSD system.

Website for personal collection and previewing of LaTeX templates. Presented with Python/Jinja2.

Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

Google Docs content parser

RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link belo…

Fast Structural Variation Detection Toolbox