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lakshmikc/README.md

Hi, I'm Lakshmi πŸ‘‹

I am a computational biologist and AI/ML scientist with a simple conviction: messy biological data holds the answers to some of medicine's hardest questions And the right tools can unlock them.


πŸ”¬ What I Work On

I design and develop reproducible, interpretable, and scalable analysis systems for:

  • Multi-omics integration β€” RNA-seq, single-cell, proteomics, GWAS/QTL, and metabolomics
  • Target identification & prioritization β€” evidence synthesis + ML ranking
  • Phenotype stratification & systems biology models
  • Cloud-native, reproducible bioinformatics workflows

Open-Source Bioinformatics Tools

I am in the process of building modular, community-ready workflows and platforms to accelerate translational discovery:

  • End-to-end target discovery pipelines
  • Reproducible ML evaluation templates for biological datasets
  • Standardized scRNA-seq and multi-data integration workflows
  • Knowledge-integration frameworks for evidence-based prioritization

These tools are designed to help scientists move from data β†’ hypothesis β†’ validation.


Current Focus

  • Interpretable ML for target prioritization
  • Modular, reusable computational infrastructure
  • Scalable multi-dataset evidence integration
  • Translational genomics and precision medicine\

🧬 Research Areas

  • πŸ«€ Cardiometabolic diseases & obesity
  • 🧠 Neuroscience & cardiac neurobiology
  • 🫁 Liver disease & hepatology
  • πŸ§ͺ Functional genomics & transcriptomics
  • πŸ€– AI-driven target identification & validation
  • πŸ“Š Causal inference & biomarker discovery

πŸ“Š GitHub Stats

Lakshmi's GitHub Stats Top Languages


πŸ› οΈ Languages & Tools

R Python Bash Linux Git SQL Nextflow Plotly AWS


🌱 My Philosophy

"I enjoy building tools and algorithms that help scientists and clinicians make sense of messy biological data β€” because good science deserves good tools."

I believe open science accelerates discovery. Everything I build here is designed to be transparent, reproducible, and community-ready. Whether you're a PhD student running your first RNA-seq analysis or a seasoned computational biologist looking for a robust pipeline, I hope something here is useful to you.

Pull requests, issues, and collaborations are always welcome. 🀝


πŸ“¬ Let's Connect

LinkedIn ORCID Email


Based in Boston, MA | Open to collaborations in computational biology, AI/ML for drug discovery, and open-source bioinformatics

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