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Releases: kingaa/phylopomp

0.16.2.0

12 Feb 14:48
09d0b17

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The supported linear birth-death-sampling processes now allow for both destructive and non-destructive sampling (see ?LBDP).

0.16.0.0

04 Feb 22:31
2003089

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  • gendat() now returns the deme for samples.
  • The Strains model (see ?strains) now has a filtering code: strains_pomp().

0.15.2.0

29 Jan 19:13
d2b23d0

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This release fixes a bug in the curtail function.

0.15.0.0

16 Dec 22:24
400c519

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This release includes simulators for two new models:

  • 'Strains': in which 3 strains compete for susceptibles.
  • 'TwoUndead': which is identical to the 'TwoSpecies' model, except in that strains persist as ghosts after their demise.

In addition, there are some improvements to the underlying library:

  • It is now possible to have events in which lineages migrate when sampled.
  • There is some additional error-trapping.

0.14.9.1

04 Sep 19:04
b19f3e7

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This release contains an improvement to the curtail() function, which can now truncate a genealogy from either the left or the right.

It also contains some streamlining of the underyling C++ library functions.

0.14.8.0

15 Nov 20:15
f8f5dba

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This release fixes an error in the filtering codes for the SEIR and Two-Species models.

There are also some changes to allow for simulation with multiple (batch) sampling.

0.14.6.5

31 Oct 03:17
ff1c2e8

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A bug, introduced in the previous release, has been fixed.

0.14.6.4

30 Oct 09:56
495b854

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This release fixes bugs.

0.14.6.2

27 Oct 09:59
7394680

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This release fixes bugs in the two-species spillover model's simulation and filtering codes.

0.14.6.1

24 Oct 09:28
13fb7a1

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The filtering codes for the two-species spillover model are now working.