Benchmark of differential abundance methods on microbiome data

Count Regression for Correlated Observations with the Beta-binomial

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Code, unit tests, and tutorials for running PICRUSt2

Parser and annotation tools using the FAPROTAX database (Louca S. et al., 2016)

Studying the statistical relationship between species and groups of sites

Plant Gall Ontology

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

Free monospaced font with programming ligatures

Advanced R: a book

A library for creating complex UpSet plots with ggplot2 geoms

What should perfect bioinformatic tools be like?

mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data

Upgraded FASTP more suitable for industry standard

The official sources for the RDKit library

Tools helping to decide if a color palette is colorblind friendly

collections of tools for cytometry data analysis

Core flow cytometry infrastructure

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX, for the generation and analysis of scaffold networks and scaffold trees.

Decorate a plot with associated information

Scikit-learn compatible library for molecular fingerprints and chemoinformatics

The MinHashed Atom Pair fingerprint of radius 2

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s