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A modular single-cell RNA-seq analysis pipeline in R with Python support

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evanbio/scFlowKit

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scFlowKit

scFlowKit is a modular single-cell RNA-seq analysis pipeline in R, with optional Python support.
This project is built progressively as a personal toolkit for learning, prototyping, and reusing scRNA-seq analysis components.

Features

  • 🧬 Step-by-step modular analysis
  • 📦 Clean and lightweight project structure
  • 🔁 Reusable functions and custom visualizations
  • ✍️ Well-commented code and learning notes

Status

Currently under development (started March 2025).
Focused on data loading and quality control modules.

Goal

To build a clean and extensible single-cell RNA-seq analysis pipeline while deepening my understanding of scRNA-seq data processing, annotation, and visualization.

License

This project is licensed under the MIT License.

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A modular single-cell RNA-seq analysis pipeline in R with Python support

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