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The R package ClustGeo implements a Ward-like hierarchical clustering algorithm including spatial/geographical constraints.
Details are available is the following vignette:
https://chavent.github.io/ClustGeo
To install the current development version from github, use :
devtools::install_github("chavent/ClustGeo")
# This needs the devtools package to be installed :
# install.packages("devtools")