Rev curate class name

[chrisiacovella]

Pull Request Summary

This is a very small PR that focuses on making minor changes to the function that allows you to read an HDF5 file back into a SourceDataset instance. This function now will take a "property_map" that maps the name of a property in the HDF5 file to a specific class (e.g., "dft_energy" to the Energies class in properties). Since the name of a property can be anything, we cannot necessarily infer it.

Previously, these were simply loaded into the PropertyBaseModel class; while that class has the same variables (name, units, value, property_type, classification), as it is the parent for all the actual properties we define, it does not contain any of the specific validation functions associated with a given property. Also, if writing the dataset to an hdf5 file, lots of warnings will be logged since I have a check that requires instances of AtomicNumbers, Positions and Energies to be in every record (as the minimum info required by modelforge).

I also added a factory class that allows a user to generate an instance of a class based on its name as a string (so passing "positions" will return an instance of the Positions class). I ended up not using this, but left the code (with tests) as it may ultimately be useful.

Associated Issue(s)

• updating reading from hdf5 file in curate module #371

Pull Request Checklist

• Issue(s) raised/addressed and linked
• Includes appropriate unit test(s)
• Appropriate docstring(s) added/updated
• Appropriate .rst doc file(s) added/updated
• PR is ready for review

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 92.30769% with 1 line in your changes missing coverage. Please review.

Project coverage is 90.79%. Comparing base (d56fbfd) to head (0ac51d4).

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[Copilot]

Pull Request Overview

This PR focuses on enhancing the HDF5 file reading functionality by introducing property mapping support and adding a factory class for property instantiation. The main goal is to allow users to specify how properties should be mapped to specific classes when reading from HDF5 files, rather than defaulting to the generic PropertyBaseModel class.

• Adds property_map parameter to create_dataset_from_hdf5 function for mapping property names to specific classes
• Implements PropertyFactory class for programmatic property instantiation based on string names
• Updates comprehensive test coverage for both new features and property mapping scenarios

Reviewed Changes

Copilot reviewed 4 out of 4 changed files in this pull request and generated 3 comments.

File	Description
modelforge-curate/modelforge/curate/tests/test_curate.py	Adds extensive test coverage for HDF5 reading with property mapping and PropertyFactory functionality
modelforge-curate/modelforge/curate/sourcedataset.py	Enhances create_dataset_from_hdf5 function with property_map parameter support
modelforge-curate/modelforge/curate/properties.py	Implements PropertyFactory class for creating property instances from string names
modelforge-curate/modelforge/curate/examples/basic_usage.ipynb	Updates notebook with demonstration of property mapping usage and corrects typos

Comments suppressed due to low confidence (1)