A

Adams, M. J. et al. (2017) 50 years of the International Committee on Taxonomy of Viruses: progress and prospects. Archives of Virology, 162(5), pp. 1441-1446. (doi: 10.1007/s00705-016-3215-y) (PMID:28078475)

Agoti, C. N. et al. (2017) Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. Virus Evolution, 3(1), vex006. (doi: 10.1093/ve/vex006) (PMID:28458916) (PMCID:PMC5399923)

Anderson, T. J.C. et al. (2017) Rapid identification of genes controlling virulence and immunity in malaria parasites. PLoS Pathogens, 13(7), e1006447. (doi: 10.1371/journal.ppat.1006447) (PMID:28704525) (PMCID:PMC5507557)

Ansari, M. A. et al. (2017) Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus. Nature Genetics, 49(5), pp. 666-673. (doi: 10.1038/ng.3835) (PMID:28394351)

B

Bach-Pages, M., Castello, A. and Preston, G. M. (2017) Plant RNA interactome capture: revealing the plant RBPome. Trends in Plant Science, 22(6), pp. 449-451. (doi: 10.1016/j.tplants.2017.04.006) (PMID:28478905)

Baron, M. D., Diop, B., Njeumi, F., Willett, B. J. and Bailey, D. (2017) Future research to underpin successful peste des petits ruminants virus (PPRV) eradication. Journal of General Virology, 98(11), pp. 2635-2644. (doi: 10.1099/jgv.0.000944) (PMID:29022862) (PMCID:PMC5845661)

Barski, M., Brennan, B. , Miller, O. K., Potter, J. A., Vijayakrishnan, S. , Bhella, D. , Naismith, J. H., Elliott, R. M. and Schwarz-Linek, U. (2017) Rift Valley fever phlebovirus NSs protein core domain structure suggests molecular basis for nuclear filaments. eLife, 6, e29236. (doi: 10.7554/elife.29236) (PMID:28915104) (PMCID:PMC5601994)

Bhome, R. et al. (2017) Exosomal microRNAs derived from colorectal cancer-associated fibroblasts: role in driving cancer progression. Aging, 9(12), pp. 2666-2694. (doi: 10.18632/aging.101355) (PMID:29283887)

Blanco-Melo, D., Gifford, R. J. and Bieniasz, P. D. (2017) Co-option of an endogenous retrovirus envelope for host defense in hominid ancestors. eLife, 6, e22519. (doi: 10.7554/eLife.22519) (PMID:28397686) (PMCID:PMC5388530)

Boutier, M., Gao, Y., Vancsok, C., Suárez, N., Davison, A. J. and Vanderplasschen, A. (2017) Identification of an essential virulence gene of cyprinid herpesvirus 3. Antiviral Research, 145, pp. 60-69. (doi: 10.1016/j.antiviral.2017.07.002) (PMID:28690142) (PMCID:PMC5588920)

Brennan, B. , Rezelj, V. V. and Elliott, R. M. (2017) Mapping of transcription termination within the S segment of SFTS phlebovirus facilitated the generation of NSs-deletant viruses. Journal of Virology, 91(16), e00743-17. (doi: 10.1128/JVI.00743-17) (PMID:28592543) (PMCID:PMC5533932)

Briggs, L. C., Chan, A.W. E., Davis, C. A. , Whitelock, N., Hotiana, H. A., Baratchian, M., Bagnéris, C., Selwood, D. L., Collins, M. K. and Barrett, T. E. (2017) IKKγ mimetic peptides block the resistance to apoptosis associated with KSHV infection. Journal of Virology, 91(23), e01170-17. (doi: 10.1128/JVI.01170-17) (PMID:28931678) (PMCID:PMC5686756)

Burns, A. M. and Bhella, D. (2017) Killer microbes in movies. Microbiology Today, 44(4), pp. 162-165.

Burt, F. J. et al. (2017) Chikungunya virus: an update on the biology and pathogenesis of this emerging pathogen. Lancet Infectious Diseases, 17(4), e107-e117. (doi: 10.1016/S1473-3099(16)30385-1) (PMID:28159534)

C

Castello, A. , Frese, C. K., Fischer, B., Järvelin, A. I., Horos, R., Alleaume, A.-M., Foehr, S., Curk, T., Krijgsveld, J. and Hentze, M. W. (2017) Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap. Nature Protocols, 12(12), pp. 2447-2464. (doi: 10.1038/nprot.2017.106) (PMID:29095441)

Celma, C. C. et al. (2017) Replication-deficient particles: new insights into the next generation of bluetongue virus vaccines. Journal of Virology, 91(1), e01892-16. (doi: 10.1128/jvi.01892-16) (PMID:27795442) (PMCID:PMC5165199)

Chan, M. C.W. et al. (2017) Global spread of norovirus GII.17 Kawasaki 308, 2014–2016. Emerging Infectious Diseases, 23(8), pp. 1359-1354. (doi: 10.3201/eid2308.161138) (PMID:28726618) (PMCID:PMC5547775)

Chan, M. C.W., Kwok, K. , Hung, T.-N., Chan, L.-Y. and Chan, P. K.S. (2017) Complete genome sequence of an emergent recombinant GII. P16-GII. 2 norovirus strain associated with an epidemic spread in the winter of 2016-2017 in Hong Kong, China. Genome Announcements, 5(20), e00343-17. (doi: 10.1128/genomeA.00343-17) (PMID:28522708) (PMCID:PMC5442379)

Chan, M. C.W., Kwok, K. , Hung, T.-N. and Chan, P. K.S. (2017) Molecular epidemiology and strain comparison between hepatitis E viruses in human sera and pig livers during 2014 to 2016 in Hong Kong. Journal of Clinical Microbiology, 55(5), pp. 1408-1415. (doi: 10.1128/JCM.02020-16) (PMID:28202801) (PMCID:PMC5405258)

Chan, M. C.W., Lee, N., Hung, T.-N., Chan, L.-Y., Kwok, K. , Wong, R. Y.K. and Chan, P. K.S. (2017) Recurrent infections of emergent norovirus GII. 17 in an elderly patient. Clinical Infectious Diseases, 64(5), pp. 697-699. (doi: 10.1093/cid/ciw822) (PMID:27956459)

Chepkemoi, S. T., Mararo, E., Butungi, H., Paredes, J., Masiga, D., Sinkins, S. P. and Herren, J. K. (2017) Identification of Spiroplasma insolitum symbionts in Anopheles gambiae. Wellcome Open Research, 2, 90. (doi: 10.12688/wellcomeopenres.12468.1) (PMID:29152597) (PMCID:PMC5668936)

Choudhury, N. R. et al. (2017) RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. BMC Biology, 15, (doi: 10.1186/s12915-017-0444-9) (PMID:29117863) (PMCID:PMC5678581)

Conley, M. , Emmott, E., Orton, R. , Taylor, D., Carneiro, D. G., Murata, K., Goodfellow, I. G., Hansman, G. S. and Bhella, D. (2017) Vesivirus 2117 capsids more closely resemble sapovirus and lagovirus particles than other known vesivirus structures. Journal of General Virology, 98(1), pp. 68-76. (doi: 10.1099/jgv.0.000658) (PMID:27902397) (PMCID:PMC537039)

Cumberworth, S., Clark, J. J., Kohl, A. and Donald, C. L. (2017) Inhibition of type I interferon induction and signalling by mosquito-borne flaviviruses. Cellular Microbiology, 19(5), e12737. (doi: 10.1111/cmi.12737) (PMID:28273394) (PMCID:PMC5413821)

Cumberworth, S. L. et al. (2017) Zika virus tropism and interactions in myelinating neural cell cultures: CNS cells and myelin are preferentially affected. Acta Neuropathologica Communications, 5, 50. (doi: 10.1186/s40478-017-0450-8) (PMID:28645311) (PMCID:PMC5481922)

D

da Silva Filipe, A. et al. (2017) Response to DAA therapy in the NHS England early access programme for rare HCV subtypes from low and middle income countries. Journal of Hepatology, 67(6), pp. 1348-1350. (doi: 10.1016/j.jhep.2017.06.035) (PMID:28789880)

Dabo, S. et al. (2017) Inhibition of the inflammatory response to stress by targeting interaction between PKR and its cellular activator PACT. Scientific Reports, 7, 16129. (doi: 10.1038/s41598-017-16089-8) (PMID:29170442) (PMCID:PMC5701060)

Davies, V. , Reeve, R. , Harvey, W. T., Maree, F. F. and Husmeier, D. (2017) A sparse hierarchical Bayesian model for detecting relevant antigenic sites in virus evolution. Computational Statistics, 32(3), pp. 803-843. (doi: 10.1007/s00180-017-0730-6)

Davison, A. J. , Subramaniam, K., Kerr, K., Jacob, J. M., Landrau, N., Walsh, M. T., Wells, R. S. and Waltzek, T. B. (2017) Genome sequence of a gammaherpesvirus from a common bottlenose dolphin (Tursiops truncatus). Genome Announcements, 5(31), e00777-17. (doi: 10.1128/genomeA.00777-17) (PMID:28774992) (PMCID:PMC5543654)

de Souza, W. M., Romeiro, M. F., Modha, S. , de Araujo, J., Queiroz, L. H., Durigon, E. L., Moraes Figueiredo, L. T., Murcia, P. R. and Gifford, R. (2017) Chapparvoviruses occur in at least three vertebrate classes and have a broad biogeographic distribution. Journal of General Virology, 98(2), pp. 225-229. (doi: 10.1099/jgv.0.000671) (PMID:28284244) (PMCID:PMC5646239)

Desombere, I. et al. (2017) A novel neutralizing human monoclonal antibody broadly abrogates hepatitis C virus infection in vitro and in vivo. Antiviral Research, 148, pp. 53-64. (doi: 10.1016/j.antiviral.2017.10.015) (PMID:29074219) (PMCID:PMC5785094)

Dietrich, I. et al. (2017) RNA interference restricts rift valley fever virus in multiple insect systems. mSphere, 2(3), 00090-17. (doi: 10.1128/mSphere.00090-17) (PMID:28497117) (PMCID:PMC5415632)

Dietrich, I., Shi, X. , McFarlane, M. , Watson, M., Blomström, A.-L., Skelton, J. K., Kohl, A. , Elliott, R. M. and Schnettler, E. (2017) The antiviral RNAi response in vector and non-vector cells against orthobunya viruses. PLoS Neglected Tropical Diseases, 11(1), e0005272. (doi: 10.1371/journal.pntd.0005272) (PMID:28060823) (PMCID:PMC5245901)

Dolle, D. D., Liu, Z., Cotten, M. , Simpson, J. T., Iqbal, Z., Durbin, R., McCarthy, S. A. and Jeabe, T. M. (2017) Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes. Genome Research, 27(2), pp. 300-309. (doi: 10.1101/gr.211748.116) (PMID:27986821) (PMCID:PMC5287235)

Donald, C. (2017) Whatever happened to the Zika virus? Conversation, 6 Sep.

Drake, M. J., Brennan, B. , Briley, K., Bart, S. M., Sherman, E., Szemiel, A. M., Minutillo, M., Bushman, F. D. and Bates, P. (2017) A role for glycolipid biosynthesis in severe fever with thrombocytopenia syndrome virus entry. PLoS Pathogens, 13(4), e1006316. (doi: 10.1371/journal.ppat.1006316) (PMID:28388693) (PMCID:PMC5397019)

Dudas, G. et al. (2017) Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature, 544(7650), pp. 309-315. (doi: 10.1038/nature22040) (PMID:28405027) (PMCID:PMC5712493)

Dumas, M.-E. et al. (2017) Microbial-host co-metabolites are prodromal markers predicting phenotypic heterogeneity in behavior, obesity, and impaired glucose tolerance. Cell Reports, 20(1), pp. 136-148. (doi: 10.1016/j.celrep.2017.06.039) (PMID:28683308)

F

Fard, M. K. et al. (2017) BCAS1 expression defines a population of early myelinating oligodendrocytes in multiple sclerosis lesions. Science Translational Medicine, 9(419), eaam7816. (doi: 10.1126/scitranslmed.aam7816) (PMID:29212715)

Farkašová, H., Hron, T., Pačes, J., Hulva, P., Benda, P., Gifford, R. J. and Elleder, D. (2017) Discovery of an endogenous Deltaretrovirus in the genome of long-fingered bats (Chiroptera: Miniopteridae). Proceedings of the National Academy of Sciences of the United States of America, 114(12), pp. 3145-3150. (doi: 10.1073/pnas.1621224114) (PMID:28280099) (PMCID:PMC5373376)

Fielding, C. A. et al. (2017) Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation. eLife, 6, e22206. (doi: 10.7554/eLife.22206) (PMID:28186488) (PMCID:PMC5367895)

G

Geoghegan, V., Stainton, K., Rainey, S. M. , Ant, T. H., Dowle, A. A., Larson, T., Hester, S., Charles, P. D., Thomas, B. and Sinkins, S. P. (2017) Perturbed cholesterol and vesicular trafficking associated with dengue blocking in Wolbachia-infected Aedes aegypti cells. Nature Communications, 8, 526. (doi: 10.1038/s41467-017-00610-8) (PMID:28904344) (PMCID:PMC5597582)

Glynn, J. R. et al. (2017) Asymptomatic infection and unrecognised Ebola virus disease in Ebola-affected households in Sierra Leone: a cross-sectional study using a new non-invasive assay for antibodies to Ebola virus. Lancet Infectious Diseases, 17(6), pp. 645-653. (doi: 10.1016/S1473-3099(17)30111-1) (PMID:28256310)

Goldstein, E. J., Harvey, W. T., Wilkie, G. S., Shepherd, S. J., MacLean, A. R., Murcia, P. R. and Gunson, R. N. (2017) Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) viruses. Microbial Genomics, 4, (doi: 10.1099/mgen.0.000137) (PMID:29310750) (PMCID:PMC5857367)

Gouzil, J. et al. (2017) The nonstructural protein NSs of Schmallenberg virus is targeted to the nucleolus and induces nucleolar disorganization. Journal of Virology, 91(1), e01263-16. (doi: 10.1128/JVI.01263-16) (PMID:27795408) (PMCID:PMC5165206)

Graham, S. and Faizo, A. A. A. (2017) Control of human papillomavirus gene expression by alternative splicing. Virus Research, 231, pp. 83-95. (doi: 10.1016/j.virusres.2016.11.016) (PMID:27867028) (PMCID:PMC5335905)

Graham, S. V. (2017) The human papillomavirus replication cycle, and its links to cancer progression: a comprehensive review. Clinical Science, 131(17), pp. 2201-2221. (doi: 10.1042/CS20160786) (PMID:28798073)

Graham, S. V. (2017) Keratinocyte differentiation-dependent human papillomavirus gene regulation. Viruses, 9(9), 245. (doi: 10.3390/v9090245) (PMID:28867768) (PMCID:PMC5618011)

Grove, J. , Hu, K., Farquhar, M. J., Goodall, M., Walker, L., Jamshad, M., Drummer, H. E., Bill, R. M., Balfe, P. and McKeating, J. A. (2017) A new panel of epitope mapped monoclonal antibodies recognising the prototypical tetraspanin CD81. Wellcome Open Research, 2, 82. (doi: 10.12688/wellcomeopenres.12058.1) (PMID:29090272) (PMCID:PMC5657224)

Gudi, V. et al. (2017) Synaptophysin is a reliable marker for axonal damage. Journal of Neuropathology and Experimental Neurology, 76(2), pp. 109-125. (doi: 10.1093/jnen/nlw114) (PMID:28177496)

H

Hadpech, S. et al. (2017) Alpha-helicoidal HEAT-like repeat proteins (αRep) selected as interactors of HIV-1 nucleocapsid negatively interfere with viral genome packaging and virus maturation. Scientific Reports, 7, 16335. (doi: 10.1038/s41598-017-16451-w) (PMID:29180782) (PMCID:PMC5703948)

Hage, E. et al. (2017) Characterization of human cytomegalovirus genome diversity in immunocompromised hosts by whole genomic sequencing directly from clinical specimens. Journal of Infectious Diseases, 215(11), pp. 1673-1683. (doi: 10.1093/infdis/jix157) (PMID:28368496)

Harvey-Samuel, T., Ant, T. and Alphey, L. (2017) Towards the genetic control of invasive species. Biological Invasions, 19(6), pp. 1683-1703. (doi: 10.1007/s10530-017-1384-6)

Heerman van Voss, M. R. et al. (2017) Nuclear DDX3 expression predicts poor outcome in colorectal and breast cancer. OncoTargets and Therapy, 10, pp. 3501-3513. (doi: 10.2147/OTT.S140639) (PMID:28761359) (PMCID:PMC5522823)

Henzy, J. E., Gifford, R. J. , Kenaley, C. P. and Johnson, W. E. (2017) An intact retroviral gene conserved in spiny-rayed fishes for over 100 My. Molecular Biology and Evolution, 34(3), pp. 634-639. (doi: 10.1093/molbev/msw262) (PMID:28039384)

Herder, V. , Ciurkiewicz, M., Baumgärtner, W., Jagannathan, V. and Leeb, T. (2017) Frame-shift variant in the CHRNE gene in a juvenile dog with suspected myasthenia gravis-like disease. Animal Genetics, 48(5), p. 625. (doi: 10.1111/age.12558) (PMID:28508416)

Ho, K. L., Kueh, C. L., Beh, P. L., Tan, W. S. and Bhella, D. (2017) Cryo-electron microscopy structure of the Macrobrachium rosenbergii nodavirus capsid at 7 angstroms resolution. Scientific Reports, 7, 2083. (doi: 10.1038/s41598-017-02292-0) (PMID:28522842) (PMCID:PMC5437026)

Hosie, M. J. , Techakriengkrai, N., Beczkowski, P. M., Harris, M., Logan, N. and Willett, B. (2017) The comparative value of feline virology research: can findings from the feline lentiviral vaccine be translated to humans? Veterinary Sciences, 4(1), 7. (doi: 10.3390/vetsci4010007)

Howlett, P., Walder, A., Lisk, D., N'jai, A., Lado, M., Brown, C., Sevalie, S., Sesay, F.R., Semple, M.G. and Scott, J.T. (2017) Neurological and Psychiatric Manifestations of Post Ebola Syndrome in Sierra Leone. Spring Meeting for Clinician Scientists in Training 2017, London, UK, 23 Feb 2017. S48. (doi: 10.1016/S0140-6736(17)30444-0)

Hülskötter, K., Schmidtke, D., Dubicanac, M., Siesenop, U., Zimmermann, E., Gerhauser, I., Baumgärtner, W. and Herder, V. (2017) Spontaneous listeriosis in grey mouse lemurs (Microcebus murinus), but not in Goodman's mouse lemurs (Microcebus lehilahytsara) of the same colony. Veterinary Microbiology, 208, pp. 94-96. (doi: 10.1016/j.vetmic.2017.07.023) (PMID:28888657)

I

Illingworth, C. J.R. , Roy, S., Beale, M. A., Tutill, H., Williams, R. and Breuer, J. (2017) On the effective depth of viral sequence data. Virus Evolution, 3(2), vex030. (doi: 10.1093/ve/vex030) (PMID:29250429) (PMCID:PMC5724399)

J

Jacquot, M. , Nomikou, K. , Palmarini, M. , Mertens, P. and Biek, R. (2017) Bluetongue virus spread in Europe is a consequence of climatic, landscape and vertebrate host factors as revealed by phylogeographic inference. Proceedings of the Royal Society of London Series B: Biological Sciences, 284(1864), 20170919. (doi: 10.1098/rspb.2017.0919) (PMID:29021180) (PMCID:PMC5647287)

Jary, H. R., Aston, S., Ho, A. , Giorgi, E., Kalata, N., Nyirenda, M., Mallewa, J., Peterson, I., Gordon, S. B. and Mortimer, K. (2017) Household air pollution, chronic respiratory disease and pneumonia in Malawian adults: A case-control study. Wellcome Open Research, 2, 103. (doi: 10.12688/wellcomeopenres.12621.1) (PMID:29387802) (PMCID:PMC5730861)

Jiang, X., Feyertag, F. and Robertson, D. L. (2017) Protein structural disorder of the envelope V3 loop contributes to the switch in human immunodeficiency virus type 1 cell tropism. PLoS ONE, 12(10), e0185790. (doi: 10.1371/journal.pone.0185790) (PMID:29049306) (PMCID:PMC5648111)

K

Kaur, N., Jain, J., Kumar, A., Narang, M., Zakaria, M.K. , Marcello, A., Kumar, D., Gaind, R. and Sunil, S. (2017) Chikungunya outbreak in Delhi, India, 2016: report on coinfection status and comorbid conditions in patients. New Microbes and New Infections, 20, pp. 39-42. (doi: 10.1016/j.nmni.2017.07.007) (PMID:29158907) (PMCID:PMC5682881)

Klymenko, T. et al. (2017) RNA-Seq analysis of differentiated keratinocytes reveals a massive response to late events during human papillomavirus 16 infection, including loss of epithelial barrier function. Journal of Virology, 91(24), e01001-17. (doi: 10.1128/JVI.01001-17) (PMID:29021401) (PMCID:PMC5709591)

Kouchaki, S., Tirunagari, S., Tapinos, A. and Robertson, D. L. (2017) Local Binary Patterns as a Feature Descriptor in Alignment-free Visualisation of Metagenomic Data. In: 2016 IEEE Symposium Series on Computational Intelligence (SSCI), Athens, Greece, 06-09 Dec 2016, ISBN 9781509042401 (doi: 10.1109/SSCI.2016.7849955)

Kouchaki, S., Tirunagari, S., Tapinos, A. and Robertson, D. L. (2017) Marginalised Stack Denoising Autoencoders for Metagenomic Data Binning. In: 2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), Manchester, UK, 23-25 Aug 2017, ISBN 9781467389884 (doi: 10.1109/CIBCB.2017.8058552)

Kussmann, I., Zimmermann, U. and Herder, V. (2017) Eosinophilic granuloma in a Pug dog = Eosinophiles Granulom bei einem Mops. Kleintierpraxis, 62(12), pp. 744-747. (doi: 10.2377/0023-2076-62-744)

Kwok, K. et al. (2017) Increased detection of emergent recombinant norovirus GII.P16-GII.2 strains in young adults, Hong Kong, China, 2016–2017. Emerging Infectious Diseases, 23(11), pp. 1852-1855. (doi: 10.3201/eid2311.170561) (PMID:29048294) (PMCID:PMC5652449)

L

Lee, N. et al. (2017) IFITM3, TLR3, and CD55 gene SNPs and cumulative genetic risks for severe outcomes in Chinese patients with H7N9/H1N1pdm09 influenza. Journal of Infectious Diseases, 216(1), pp. 97-104. (doi: 10.1093/infdis/jix235) (PMID:28510725) (PMCID:PMC7107409)

Lythgoe, K. A., Gardner, A., Pybus, O. G. and Grove, J. (2017) Short-sighted virus evolution and a germline hypothesis for chronic viral infections. Trends in Microbiology, 25(5), pp. 336-348. (doi: 10.1016/j.tim.2017.03.003) (PMID:28377208) (PMCID:PMC5405858)

M

Magri, A. et al. (2017) 17,β-estradiol inhibits hepatitis C virus mainly by interference with the release phase of its life cycle. Liver International, 37(5), pp. 669-677. (doi: 10.1111/liv.13303) (PMID:27885811) (PMCID:PMC5448036)

Maistriau, M., Carletti, T., Zakaria, M. K. , Braga, L., Faoro, V., Vasileiadis, V. and Marcello, A. (2017) A method for the detection of virus infectivity in single cells and real time: towards an automated fluorescence neutralization test. Virus Research, 237, pp. 1-6. (doi: 10.1016/j.virusres.2017.05.004) (PMID:28501626)

Marston, D. A. et al. (2017) Genetic analysis of a rabies virus host shift event reveals within-host viral dynamics in a new host. Virus Evolution, 3(2), vex038. (doi: 10.1093/ve/vex038) (PMID:29255631) (PMCID:PMC5729694)

McLauchlan, J. , Innes, H., Dillon, J.F., Foster, G., Holtham, E., McDonald, S. , Wilkes, B., Hutchinson, S.J. and Irving, W.L. (2017) Cohort profile: the hepatitis C virus (HCV) research UK clinical database and biobank. International Journal of Epidemiology, 46(5), 1391-1391h. (doi: 10.1093/ije/dyw362) (PMID:28338838)

McMichael, L., Edson, D., Mayer, D., Broos, A. , Kopp, S., Meers, J. and Field, H. (2017) Physiologic biomarkers and hendra virus infection in australian black flying foxes (Pteropus alecto). Journal of Wildlife Diseases, 53(1), pp. 111-120. (doi: 10.7589/2016-05-100) (PMID:27723384)

Milani, A. et al. (2017) Vaccine immune pressure influences viral population complexity of avian influenza virus during infection. Veterinary Microbiology, 203, pp. 88-94. (doi: 10.1016/j.vetmic.2017.02.016)

Mottram, T. J., Li, P. , Dietrich, I., Shi, X. , Brennan, B. , Varjak, M. and Kohl, A. (2017) Mutational analysis of Rift Valley fever phlebovirus nucleocapsid protein indicates novel conserved, functional amino acids. PLoS Neglected Tropical Diseases, 11(12), e0006155. (doi: 10.1371/journal.pntd.0006155) (PMID:29267287) (PMCID:PMC5764413)

Murakami, S., Takenaka-Uema, A., Kobayashi, T., Kato, K., Shimojima, M., Palmarini, M. and Horimoto, T. (2017) Heparan sulfate proteoglycan is an important attachment factor for cell entry of Akabane and Schmallenberg viruses. Journal of Virology, 91(15), e00503-17. (doi: 10.1128/JVI.00503-17) (PMID:28539443)

N

Naik, A. S., Owsianka, A., Palmer, B. A., Halloran, C. J., Walsh, N., Crosbie, O., Kenny-Walsh, E., Patel, A. H. and Fanning, L. J. (2017) Reverse epitope mapping of the E2 glycoprotein in antibody associated hepatitis C virus. PLoS ONE, 12(5), e0175349. (doi: 10.1371/journal.pone.0175349) (PMID:28558001) (PMCID:PMC5448734)

Naiyer, M. M. et al. (2017) KIR2DS2 recognizes conserved peptides derived from viral helicases in the context of HLA-C. Science Immunology, 2(15), eaal5296. (doi: 10.1126/sciimmunol.aal5296) (PMID:28916719)

Niebel, M. (2017) Living with hepatitis C. Lancet Gastroenterology and Hepatology, 2(10), p. 705. (doi: 10.1016/S2468-1253(17)30263-7) (PMID:28895549)

Niebel, M. , Singer, J. B., Nickbakhsh, S. , Gifford, R. J. and Thomson, E. C. (2017) Hepatitis C and the absence of genomic data in low-income countries: a barrier on the road to elimination? Lancet Gastroenterology and Hepatology, 2(10), pp. 700-701. (doi: 10.1016/S2468-1253(17)30257-1) (PMID:28895545)

Nogales, A., Chauché, C., DeDiego, M. L., Topham, D. J., Parrish, C. R., Murcia, P. R. and Martínez-Sobrido, L. (2017) The K186E amino acid substitution in the canine influenza virus H3N8 NS1 protein restores its ability to inhibit host gene expression. Journal of Virology, 91(22), e00877-17. (doi: 10.1128/JVI.00877-17) (PMID:28835506)

Nogales, A., Huang, K., Chauché, C., DeDiego, M. L., Murcia, P. R. , Parrish, C. R. and Martínez-Sobrido, L. (2017) Canine influenza viruses with modified NS1 proteins for the development of live-attenuated vaccines. Virology, 500, pp. 1-10. (doi: 10.1016/j.virol.2016.10.008) (PMID:27750071)

Nogales, A., Rodriguez, L., Chauché, C., Huang, K., Reilly, E. C., Topham, D. J., Murcia, P. R. , Parrish, C. R. and Martínez-Sobrido, L. (2017) A temperature sensitive live-attenuated canine influenza virus H3N8 vaccine. Journal of Virology, 91(4), e02211-16. (doi: 10.1128/JVI.02211-16) (PMID:27928017) (PMCID:PMC5286902)

O

Olabode, A. S., Kandathil, S. M., Lovell, S. C. and Robertson, D. L. (2017) Adaptive HIV-1 evolutionary trajectories are constrained by protein stability. Virus Evolution, 3(2), vex019. (doi: 10.1093/ve/vex019) (PMID:28852572) (PMCID:PMC5570062)

Oude Munnink, B. B., Phan, M. V.T., The VIZIONS Consortium, , Simmonds, P., Koopmans, M. P.G., Kellam, P., van der Hoek, L. and Cotten, M. (2017) Characterization of Posa and Posa-like virus genomes in fecal samples from humans, pigs, rats, and bats collected from a single location in Vietnam. Virus Evolution, 3(2), vex002. (doi: 10.1093/ve/vex022) (PMID:28948041) (PMCID:PMC5597861)

P

Pennisi, M. G. et al. (2017) Anaplasma, Ehrlichia and Rickettsia species infections in cats: European guidelines from the ABCD on prevention and management. Journal of Feline Medicine and Surgery, 19(5), pp. 542-548. (doi: 10.1177/1098612X17706462) (PMID:28438088)

Pintacuda, G. et al. (2017) hnRNPK recruits PCGF3/5-PRC1 to the Xist RNA B-repeat to establish polycomb-mediated chromosomal silencing. Molecular Cell, 68(5), 955-969.e10. (doi: 10.1016/j.molcel.2017.11.013) (PMID:29220657) (PMCID:PMC5735038)

Q

Quintas, A., Pérez-Núñez, D., Sánchez, E. G., Nogal, M. L., Hentze, M. W., Castelló, A. and Revilla, Y. (2017) Characterization of the African swine fever virus decapping enzyme during infection. Journal of Virology, 91(24), e00990-17. (doi: 10.1128/JVI.00990-17) (PMID:29021398) (PMCID:PMC5709586)

R

Rezelj, V. V., Li, P. , Chaudhary, V., Elliott, R. M., Jin, D.-Y. and Brennan, B. (2017) Differential antagonism of human innate immune responses by tick-borne Phlebovirus nonstructural proteins. mSphere, 2(3), e00234-17. (doi: 10.1128/mSphere.00234-17) (PMID:28680969) (PMCID:PMC5489658)

Rihn, S. J. , Foster, T. L., Busnadiego, I., Aziz, M. A. B., Hughes, J. , Neil, S. J.D. and Wilson, S. J. (2017) The envelope gene of transmitted HIV-1 resists a late interferon gamma-induced block. Journal of Virology, 91(7), e02254-16. (doi: 10.1128/JVI.02254-16) (PMID:28100611) (PMCID:PMC5355616)

Rodriguez, L., Nogales, A., Murcia, P. R. , Parrish, C. and Martínez-Sobrido, L. (2017) A bivalent live-attenuated influenza vaccine for the control and prevention of H3N8 and H3N2 canine influenza viruses. Vaccine, 35(34), pp. 4374-4381. (doi: 10.1016/j.vaccine.2017.06.060) (PMID:28709557)

Rodriguez, L., Nogales, A., Reilly, E. C., Topham, D. J., Murcia, P. R. , Parrish, C. R. and Martinez Sobrido, L. (2017) A live-attenuated influenza vaccine for H3N2 canine influenza virus. Virology, 504, pp. 96-106. (doi: 10.1016/j.virol.2017.01.020) (PMID:28167384)

Rogell, B., Fischer, B., Rettel, M., Krijgsveld, J., Castello, A. and Hentze, M. W. (2017) Specific RNP capture with antisense LNA/DNA mixmers. RNA, 23(8), pp. 1290-1302. (doi: 10.1261/rna.060798.117) (PMID:28476952) (PMCID:PMC5513073)

Royle, J., Donald, C. L. , Merits, A., Kohl, A. and Varjak, M. (2017) Differential effects of lipid biosynthesis inhibitors on Zika and Semliki Forest viruses. Veterinary Journal, 230, pp. 62-64. (doi: 10.1016/j.tvjl.2017.10.009) (PMID:29102599) (PMCID:PMC5726355)

S

Saucedo, B., Hughes, J. , van Beurden, S. J., Suárez, N. M., Haenen, O. L.M., Voorbergen-Laarman, M., Gröne, A. and Kik, M. J.L. (2017) Complete genome sequence of Frog virus 3, isolated from a strawberry poison frog (Oophaga pumilio) imported from Nicaragua into the Netherlands. Genome Announcements, 5(35), e00863-17. (doi: 10.1128/genomeA.00863-17) (PMID:28860243) (PMCID:PMC5578841)

Schorb, M., Gaechter, L., Avinoam, O., Sieckmann, F., Clarke, M. , Bebeacua, C., Bykov, Y. S., Sonnen, A. F.-P., Lihl, R. and Briggs, J. A.G. (2017) New hardware and workflows for semi-automated correlative cryo-fluorescence and cryo-electron microscopy/tomography. Journal of Structural Biology, 197(2), pp. 83-93. (doi: 10.1016/j.jsb.2016.06.020) (PMID:27368127) (PMCID:PMC5287355)

Schultz, V. , van der Meer, F., Wrzos, C., Scheidt, U., Bahn, E., Stadelmann, C., Brück, W. and Junker, A. (2017) Acutely damaged axons are remyelinated in multiple sclerosis and experimental models of demyelination. Glia, 65(8), pp. 1350-1360. (doi: 10.1002/glia.23167) (PMID:28560740)

Scott, J. T. and Semple, M. G. (2017) Ebola virus disease sequelae: a challenge that is not going away. Lancet Infectious Diseases, 17(5), pp. 470-471. (doi: 10.1016/S1473-3099(17)30027-0) (PMID:28094207) (PMCID:PMC5818139)

Selinger, M., Wilkie, G. S., Tong, L., Gu, Q. , Schnettler, E., Grubhoffer, L. and Kohl, A. (2017) Analysis of tick-borne encephalitis virus-induced host responses in human cells of neuronal origin and interferon-mediated protection. Journal of General Virology, 98(8), pp. 2043-2060. (doi: 10.1099/jgv.0.000853) (PMID:28786780)

Shaw, A. E. et al. (2017) Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses. PLoS Biology, 15(12), e2004086. (doi: 10.1371/journal.pbio.2004086) (PMID:29253856) (PMCID:PMC574750)

Shepherd, S. J., Black, H., Thomson, E. C. and Gunson, R. N. (2017) HIV positive patient with GBS-like syndrome. JMM Case Reports, 4(8), e005107. (doi: 10.1099/jmmcr.0.005107) (PMID:29026634) (PMCID:PMC5610709)

Simmonds, P. et al. (2017) Consensus statement: virus taxonomy in the age of metagenomics. Nature Reviews Microbiology, (doi: 10.1038/nrmicro.2016.177) (PMID:28134265)

Smith, R. W.P., Anderson, R. C., Larralde, O., Smith, J. W.S., Gorgoni, B., Richardson, W. A., Malik, P., Graham, S. V. and Gray, N. K. (2017) Viral and cellular mRNA-specific activators harness PABP and eIF4G to promote translation initiation downstream of cap binding. Proceedings of the National Academy of Sciences of the United States of America, 114(24), pp. 6310-6315. (doi: 10.1073/pnas.1610417114) (PMID:28559344) (PMCID:PMC5474791)

Smollett, K. , Blombach, F., Fouqueau, T. and Werner, F. (2017) A global characterisation of the archaeal transcription machinery. In: Clouet-d'Orval, B. (ed.) RNA Metabolism and Gene Expression in Archaea. Series: Nucleic acids and molecular biology, 32 (32). Springer International Publishing, pp. 1-26. ISBN 9783319657943 (doi: 10.1007/978-3-319-65795-0_1)

Smollett, K. , Blombach, F., Reichelt, R., Thomm, M. and Werner, F. (2017) A global analysis of transcription reveals two modes of Spt4/5 recruitment to archaeal RNA polymerase. Nature Microbiology, 2, p. 17021. (doi: 10.1038/nmicrobiol.2017.21) (PMID:28248297)

Sobel Leonard, A. et al. (2017) The effective rate of influenza reassortment is limited during human infection. PLoS Pathogens, 13(2), e1006203. (doi: 10.1371/journal.ppat.1006203) (PMID:28170438) (PMCID:PMC5315410)

Spitzbarth, I., Heinrich, F., Herder, V. , Recker, T., Wohlsein, P. and Baumgärtner, W. (2017) Canine central nervous system neoplasm phenotyping using tissue microarray technique. Veterinary Pathology, 54(3), pp. 369-379. (doi: 10.1177/0300985816688745) (PMID:28060678)

Steptoe, P. J. et al. (2017) Novel retinal lesion in Ebola survivors, Sierra Leone, 2016. Emerging Infectious Diseases, 23(7), pp. 1102-1109. (doi: 10.3201/eid2307.161608) (PMID:28628441) (PMCID:PMC5512503)

Steptoe, P. J., Scott, J. T. , Harding, S. P., Beare, N. A. V., Semple, M. G., Vandy, M. J. and Sahr, F. (2017) Ocular complications in survivors of the Ebola outbreak in Guinea. American Journal of Ophthalmology, 181, p. 180. (doi: 10.1016/j.ajo.2017.05.029) (PMID:28760310) (PMCID:PMC5833943)

Steptoe, P. J., Scott, J. T. and Semple, M. G. (2017) Reply to Lee and colleagues—Viral posterior uveitis. Survey of Ophthalmology, 62(4), pp. 404-445. (doi: 10.1016/j.survophthal.2016.12.008) (PMID:28624250)

Suárez, N. M., Lau, B. , Kemble, G. M., Lee, R., Mocarski, E. S., Wilkinson, G. W.G., Adler, S. P., McVoy, M. A. and Davison, A. J. (2017) Genomic analysis of chimeric human cytomegalovirus vaccine candidates derived from strains Towne and Toledo. Virus Genes, 53(4), pp. 650-655. (doi: 10.1007/s11262-017-1452-0) (PMID:28391502) (PMCID:PMC5527331)

Sud, A. et al. (2017) Genome-wide association study of classical Hodgkin lymphoma identifies key regulators of disease susceptibility. Nature Communications, 8, 1892. (doi: 10.1038/s41467-017-00320-1) (PMID:29196614) (PMCID:PMC5711884)

Sugrue, E. , Scott, C. and Jackson, C.J. (2017) Constrained evolution of a bispecific enzyme: lessons for biocatalyst design. Organic and Biomolecular Chemistry, 15(4), pp. 937-946. (doi: 10.1039/C6OB02355J) (PMID:28054091)

Sumner, T., Orton, R. J. , Green, D. M., Kao, R. R. and Gubbins, S. (2017) Quantifying the roles of host movement and vector dispersal in the transmission of vector-borne diseases of livestock. PLoS Computational Biology, 13(4), e1005470. (doi: 10.1371/journal.pcbi.1005470) (PMID:28369082) (PMCID:PMC5393902)

T

Tapinos, A. and Robertson, D. L. (2017) De Novo Assembly of Nucleotide Sequences in a Compressed Feature Space. In: 2017 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), Manchester, UK, 23-25 Aug 2017, ISBN 9781467389884 (doi: 10.1109/CIBCB.2017.8058556)

Terry, A., Kilbey, A., Naseer, A., Levy, L. S., Ahmad, S., Watts, C., Mackay, N., Cameron, E. , Wilson, S. and Neil, J. C. (2017) Barriers to infection of human cells by feline leukemia virus: insights into resistance to zoonosis. Journal of Virology, 91(5), e02119-16. (doi: 10.1128/JVI.02119-16) (PMID:28031367) (PMCID:PMC5309941)

Tsimpidis, M., Bachoumis, G., Mimouli, K., Kyriakopoulou, Z., Robertson, D. L. , Markoulatos, P. and Amoutzias, G. D. (2017) T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes. BMC Bioinformatics, 18, 13. (doi: 10.1186/s12859-016-1420-z) (PMID:28056784) (PMCID:PMC5216575)

V

Vancsok, C. et al. (2017) Proteomic and functional analyses of the virion transmembrane proteome of cyprinid herpesvirus 3. Journal of General Virology, 91(21), e01209-17. (doi: 10.1128/JVI.01209-17) (PMID:28794046) (PMCID:PMC5640863)

Varela, M. et al. (2017) Sensitivity to BST-2 restriction correlates with orthobunyavirus host range. Virology, 509, pp. 121-130. (doi: 10.1016/j.virol.2017.06.017) (PMID:28628828) (PMCID:PMC5526858)

Varjak, M. , Donald, C. L. , Mottram, T. J., Sreenu, V. B. , Merits, A., Maringer, K., Schnettler, E. and Kohl, A. (2017) Characterization of the Zika virus induced small RNA response in Aedes aegypti cells. PLoS Neglected Tropical Diseases, 11(10), e0006010. (doi: 10.1371/journal.pntd.0006010) (PMID:29040304) (PMCID:PMC5667879)

Varjak, M. et al. (2017) Aedes aegypti Piwi4 is a noncanonical PIWI protein involved in antiviral responses. mSphere, 2(3), 00144-17. (doi: 10.1128/mSphere.00144-17) (PMID:28497119) (PMCID:PMC5415634)

Vasiliauskaite, I. et al. (2017) Conformational flexibility in the immunoglobulin-like domain of the Hepatitis C Virus Glycoprotein E2. mBio, 8(3), e00382-17. (doi: 10.1128/mBio.00382-17) (PMID:28512091) (PMCID:PMC5433095)

Volokhov, D.V., Becker, D.J., Bergner, L.M. , Camus, M.S., Orton, R.J. , Chizhikov, V.E., Altizer, S.M. and Streicker, D.G. (2017) Novel hemotropic mycoplasmas are widespread and genetically diverse in vampire bats. Epidemiology and Infection, 145(15), pp. 3154-3167. (doi: 10.1017/S095026881700231X) (PMID:29061202)

W

Wakeham, K., Kavanagh, K., Cuschieri, K., Millan, D., Pollock, K. G., Bell, S., Burton, K., Reed, N. S. and Graham, S. V. (2017) HPV status and favorable outcome in vulvar squamous cancer. International Journal of Cancer, 140(5), pp. 1134-1146. (doi: 10.1002/ijc.30523) (PMID:27864932)

Wan, W., Kolesnikova, L., Clarke, M. , Koehler, A., Noda, T., Becker, S. and Briggs, J. A.G. (2017) Structure and assembly of the Ebola virus nucleocapsid. Nature, 551(7680), pp. 394-397. (doi: 10.1038/nature24490) (PMID:29144446) (PMCID:PMC5714281)

Westman, M. E., Malik, R., Hall, E., Harris, M., Hosie, M. J. and Norris, J. M. (2017) Duration of antibody response following vaccination against feline immunodeficiency virus. Journal of Feline Medicine and Surgery, 19(10), pp. 1055-1064. (doi: 10.1177/1098612X16673292) (PMID:27770018)

Wojtus, J. K., Fitch, J. L., Christian, E., Dalefield, T., Lawes, J. K., Kumar, K., Peebles, C. L., Altermann, E. and Hendrickson, H. L. (2017) Complete genome sequences of three novel Pseudomonas fluorescens SBW25 bacteriophages, Noxifer, Phabio, and Skulduggery. Genome Announcements, 5(31), e00725-17. (doi: 10.1128/genomeA.00725-17) (PMID:28774980) (PMCID:PMC5543642)

Z

Zakaria, M. K. , Sarkar, D. P. and Chattopadhyay, P. (2017) Induction of transcriptional gene silencing by expression of shRNA directed to c-Myc P2 promoter in hepatocellular carcinoma by tissue-specific virosomal delivery. In: Napoli, S. (ed.) Promoter Associated RNA: Methods and Protocols. Series: Methods in molecular biology (1543). Humana Press: New York, NY, pp. 245-257. ISBN 9781493967148 (doi: 10.1007/978-1-4939-6716-2_14)

Zhang, E. et al. (2017) Inherited chromosomally integrated human herpesvirus 6 genomes are ancient, intact, and potentially able to reactivate from telomeres. Journal of Virology, 91(22), e01137-17. (doi: 10.1128/JVI.01137-17) (PMID:28835501) (PMCID:PMC5660504)

Ç

Çevik, R. E., Cesarec, M., Da Silva Filipe, A. , Licastro, D., McLauchlan, J. and Marcello, A. (2017) Hepatitis C virus NS5A targets the nucleosome assembly protein NAP1L1 to control the innate cellular response. Journal of Virology, 91(18), e00880-17. (doi: 10.1128/JVI.00880-17) (PMID:28659470)