Documentation

Fields

• raNames :: [String]

  A list of branch names

• raNVec :: [Int]

  A list of haploid sample sizes.

• raMinAf :: Int

  The minimum allele count

• raMaxAf :: Int

  The maximum allele count

• raConditionOn :: [Int]

  A list of branch indices that were used to condition the allele sharing pattern

• raExcludePatterns :: [SitePattern]

  A list of patterns that are excluded.

• raTotalNrSites :: Int64

  The total number of non-missing sites in the genome.

• raCounts :: Map SitePattern Int64

  The actual data, a dictionary from allele sharing patterns to observed numbers.

• raJackknifeEstimates :: Maybe (Map SitePattern (Double, Double))

  An optional dictionary that contains Jackknife estimates and standard deviations for each pattern frequency.