Chapter 2: Getting to Know Your

Data

 Data Objects and Attribute Types

 Basic Statistical Descriptions of Data

 Measuring Data Similarity and Dissimilarity

 Summary

1
 Types of Data Sets
 Record

Relational records

Data matrix, e.g., numerical matrix,

timeout

season
coach

game
score
team

ball

lost
pla

wi
crosstabs

n
y

Document data: text documents: term-
frequency vector
Document 1 3 0 5 0 2 6 0 2 0 2

Transaction data
 Graph and network Document 2 0 7 0 2 1 0 0 3 0 0

World Wide Web
Document 3 0 1 0 0 1 2 2 0 3 0

Social or information networks

Molecular Structures
 Ordered TID Items

Video data: sequence of images
1 Bread, Coke, Milk

Temporal data: time-series

Sequential Data: transaction 2 Beer, Bread
sequences 3 Beer, Coke, Diaper, Milk

Genetic sequence data 4 Beer, Bread, Diaper, Milk
 Spatial, image and multimedia:
5 Coke, Diaper, Milk

Spatial data: maps

Image data:

Video data:
2
 Important Characteristics of
Structured Data

 Dimensionality
 Curse of dimensionality
 Sparsity
 Only presence counts
 Resolution

Patterns depend on the scale
 Distribution
 Centrality and dispersion

3
 Data Objects

 Data sets are made up of data objects.

 A data object represents an entity.
 Examples:
 sales database: customers, store items, sales

medical database: patients, treatments

university database: students, professors, courses
 Also called samples , examples, instances, data
points, objects, tuples.
 Data objects are described by attributes.
 Database rows -> data objects; columns -
>attributes.
4
 Attributes
 Attribute (or dimensions, features,
variables): a data field, representing a
characteristic or feature of a data object.
 E.g., customer _ID, name, address

 Types:
 Nominal

 Binary

 Numeric: quantitative


Interval-scaled

Ratio-scaled
5
 Attribute Types
 Nominal: categories, states, or “names of things”
 Hair_color = {auburn, black, blond, brown, grey, red,
white}
 marital status, occupation, ID numbers, zip codes
 Binary
 Nominal attribute with only 2 states (0 and 1)
 Symmetric binary: both outcomes equally important

e.g., gender
 Asymmetric binary: outcomes not equally important.

e.g., medical test (positive vs. negative)

Convention: assign 1 to most important outcome
(e.g., HIV positive)
 Ordinal
 Values have a meaningful order (ranking) but magnitude
between successive values is not known.
 Size = {small, medium, large}, grades, army rankings
6
 Numeric Attribute Types
 Quantity (integer or real-valued)
 Interval

Measured on a scale of equal-sized units

Values have order
 E.g., temperature in C˚or F˚, calendar dates

No true zero-point
 Ratio

Inherent zero-point

We can speak of values as being an order of
magnitude larger than the unit of
measurement (10 K˚ is twice as high as 5 K˚).
 e.g., temperature in Kelvin, length, counts,
monetary quantities

7
 Discrete vs. Continuous
Attributes
 Discrete Attribute
 Has only a finite or countably infinite set of values


E.g., zip codes, profession, or the set of words in
a collection of documents
 Sometimes, represented as integer variables

 Note: Binary attributes are a special case of

discrete attributes
 Continuous Attribute
 Has real numbers as attribute values


E.g., temperature, height, or weight
 Practically, real values can only be measured and

represented using a finite number of digits

 Continuous attributes are typically represented as

floating-point variables
8
Chapter 2: Getting to Know Your
Data

 Data Objects and Attribute Types

 Basic Statistical Descriptions of Data

 Measuring Data Similarity and Dissimilarity

 Summary

9
Basic Statistical Descriptions of
Data
 Motivation
 To better understand the data: central tendency,
variation and spread
 Data dispersion characteristics
 median, max, min, quantiles, outliers, variance, etc.
 Numerical dimensions correspond to sorted intervals
 Data dispersion: analyzed with multiple granularities
of precision
 Boxplot or quantile analysis on sorted intervals
 Dispersion analysis on computed measures
 Folding measures into numerical dimensions
 Boxplot or quantile analysis on the transformed
cube
10
Measuring the Central Tendency
 Mean (algebraic measure) (sample vs. population): 1 n
x   xi   x
Note: n is sample size and N is population size. n i 1 N
n
 Weighted arithmetic mean:

w x i i
Trimmed mean: chopping extreme values x  i 1
n
 Median: w
i 1
i
 Middle value if odd number of values, or average
of the middle two values otherwise
 Estimated by interpolation (for grouped data):
n / 2  ( freq )l

median L1  ( ) width
Mode freq median
 Value that occurs most frequently in the data
 Unimodal, bimodal, trimodal
 Empirical formula:
mean  mode 3 (mean  median)
11
 Symmetric vs.
Skewed Data
 Median, mean and mode of symmetric
symmetric, positively and
negatively skewed data

positively skewed negatively skewed

November 17, 2024 Data Mining: Concepts and Techniques 12

 Measuring the Dispersion of
Data
 Quartiles, outliers and boxplots
 Quartiles: Q1 (25th percentile), Q3 (75th percentile)
 Inter-quartile range: IQR = Q3 – Q1
 Five number summary: min, Q1, median, Q3, max
 Boxplot: ends of the box are the quartiles; median is marked; add
whiskers, and plot outliers individually
 Outlier: usually, a value higher/lower than 1.5 x IQR
 Variance and standard deviation (sample: s, population: σ)
 Variance: (algebraic, scalable computation)
1 n 1 n 2 1 n 1 n 1 n
2
s  
n  1 i 1
2

( xi  x )   2
[ xi  ( xi ) ]
n  1 i 1 n i 1
   ( xi   ) 2 
2

N i 1 N
 xi   2
i 1
2

 Standard deviation s (or σ) is the square root of variance s2 (or σ2)

13
 Boxplot Analysis
 Five-number summary of a distribution
 Minimum, Q1, Median, Q3, Maximum
 Boxplot
 Data is represented with a box
 The ends of the box are at the first and
third quartiles, i.e., the height of the
box is IQR
 The median is marked by a line within
the box
 Whiskers: two lines outside the box
extended to Minimum and Maximum
 Outliers: points beyond a specified
outlier threshold, plotted individually
14
 Visualization of Data Dispersion: 3-D
Boxplots

November 17, 2024 Data Mining: Concepts and Techniques 15

 Properties of Normal Distribution
Curve

 The normal (distribution) curve

 From μ–σ to μ+σ: contains about 68% of the

measurements (μ: mean, σ: standard deviation)

 From μ–2σ to μ+2σ: contains about 95% of it
 From μ–3σ to μ+3σ: contains about 99.7% of it

16
Graphic Displays of Basic Statistical
Descriptions

 Boxplot: graphic display of five-number summary

 Histogram: x-axis are values, y-axis repres.
frequencies
 Quantile plot: each value xi is paired with fi indicating
that approximately 100 fi % of data are  xi
 Quantile-quantile (q-q) plot: graphs the quantiles of
one univariant distribution against the corresponding
quantiles of another
 Scatter plot: each pair of values is a pair of
coordinates and plotted as points in the plane
17
Chapter 2: Getting to Know Your
Data

 Data Objects and Attribute Types

 Basic Statistical Descriptions of Data

 Measuring Data Similarity and Dissimilarity

 Summary

18
 Similarity and Dissimilarity
 Similarity
 Numerical measure of how alike two data objects

are
 Value is higher when objects are more alike

 Often falls in the range [0,1]

 Dissimilarity (e.g., distance)

 Numerical measure of how different two data

objects are
 Lower when objects are more alike

 Minimum dissimilarity is often 0

 Upper limit varies

 Proximity refers to a similarity or dissimilarity

19
 Data Matrix and Dissimilarity
Matrix
 Data matrix
 n data points with  x11 ... x1f ... x1p 
 
p dimensions  ... ... ... ... ... 
 Two modes x ... xif ... xip 
 i1 
 ... ... ... ... ... 
x ... xnf ... xnp 
 n1 
 Dissimilarity matrix
 n data points, but
 0 
 d(2,1) 0 
registers only the  
 d(3,1) d ( 3,2) 0 
distance  
 A triangular matrix  : : : 
 d ( n,1) d ( n,2) ... ... 0
 Single mode

20
 Proximity Measure for Nominal
Attributes
 Can take 2 or more states, e.g., red, yellow,
blue, green (generalization of a binary attribute)
 Method 1: Simple matching

m: # of matches, p: total # of variables

d (i, j)  p p m
 Method 2: Use a large number of binary
attributes

creating a new binary attribute for each of the
M nominal states

21
 Proximity Measure for Binary
Attributes
Object j
 A contingency table for binary data
Object i

 Distance measure for symmetric

binary variables:
 Distance measure for asymmetric
binary variables:
 Jaccard coefficient (similarity
measure for asymmetric binary
variables):

 Note: Jaccard coefficient is the same as “coherence”:

22
 Dissimilarity between Binary
Variables
 Example
Name Gender Fever Cough Test-1 Test-2 Test-3 Test-4
Jack M Y N P N N N
Mary F Y N P N P N
Jim M Y P N N N N
 Gender is a symmetric attribute
 The remaining attributes are asymmetric binary
 Let the values Y and P be 1, and the value N 0
0 1
d ( jack , mary )  0.33
2  0 1
11
d ( jack , jim )  0.67
111
1 2
d ( jim , mary )  0.75
11 2
23
 Standardizing Numeric Data
x  
 Z-score: z  
 X: raw score to be standardized, μ: mean of the
population, σ: standard deviation
 the distance between the raw score and the population
mean in units of the standard deviation
 negative when the raw score is below the mean, “+”
when above

s 1Calculate
An alternative way: (| x  m the
f n 1f |  | xmean
 mabsolute
f
| ... | x deviation
2f f
 m |) nf f
m f  1n (x1 f  x2 f  ...  xnf )
xif  m f
.

where
zif  s
f
 standardized measure (z-score):
 Using mean absolute deviation is more robust than using
standard deviation
24
 Example:
Data Matrix and Dissimilarity Matrix
Data Matrix
x2 x4
point attribute1 attribute2
4 x1 1 2
x2 3 5
x3 2 0
x4 4 5
2 x1
Dissimilarity Matrix
(with Euclidean Distance)
x3
0 4 x1 x2 x3 x4
2
x1 0
x2 3.61 0
x3 5.1 5.1 0
x4 4.24 1 5.39 0

25
Distance on Numeric Data: Minkowski
Distance
 Minkowski distance: A popular distance measure

where i = (xi1, xi2, …, xip) and j = (xj1, xj2, …, xjp) are two
p-dimensional data objects, and h is the order (the
distance so defined is also called L-h norm)
 Properties
 d(i, j) > 0 if i ≠ j, and d(i, i) = 0 (Positive definiteness)
 d(i, j) = d(j, i) (Symmetry)
 d(i, j)  d(i, k) + d(k, j) (Triangle Inequality)
 A distance that satisfies these properties is a metric

26
Special Cases of Minkowski Distance
 h = 1: Manhattan (city block, L1 norm) distance
 E.g., the Hamming distance: the number of bits that are
different between two binary vectors
d (i, j) | x  x |  | x  x | ... | x  x |
i1 j1 i2 j 2 ip jp

 h = 2: (L2 norm) Euclidean distance

d (i, j)  (| x  x |2  | x  x |2 ... | x  x |2 )
i1 j1 i2 j 2 ip jp

 h  . “supremum” (Lmax norm, L norm) distance.

 This is the maximum difference between any component
(attribute) of the vectors

27
 Example: Minkowski Distance
Dissimilarity Matrices
point attribute 1 attribute 2 Manhattan
x1 1 2 (L1)L x1 x2 x3 x4
x2 3 5 x1 0
x3 2 0 x2 5 0
x4 4 5 x3 3 6 0
x4 6 1 7 0
Euclidean (L2)
x2 x4
L2 x1 x2 x3 x4
4 x1 0
x2 3.61 0
x3 2.24 5.1 0
x4 4.24 1 5.39 0

2 x1
Supremum
L x1 x2 x3 x4
x1 0
x2 3 0
x3 x3 2 5 0
0 2 4 x4 3 1 5 0
28
 Ordinal Variables

 An ordinal variable can be discrete or continuous

 Order is important, e.g., rank
 Can be treated like interval-scaled
 replace x by their rank rif {1,..., M f }
if

 map the range of each variable onto [0, 1] by

replacing i-th object in the f-th variable by
rif  1
zif 
Mf 1

 compute the dissimilarity using methods for

interval-scaled variables

29
 Attributes of Mixed Type
 A database may contain all attribute types
 Nominal, symmetric binary, asymmetric binary,

numeric, ordinal
 One may use a weighted formula to combine their
effects
 pf 1 ij( f ) dij( f )
d (i, j)  p
 f 1 ij( f )
 f is binary or nominal:
dij(f) = 0 if xif = xjf , or dij(f) = 1 otherwise
 f is numeric: use the normalized distance
 f is ordinal

Compute ranks rif and zif  rif  1


Treat zif as interval-scaled Mf 1
30
 Cosine Similarity
 A document can be represented by thousands of attributes, each
recording the frequency of a particular word (such as keywords)
or phrase in the document.

 Other vector objects: gene features in micro-arrays, …

 Applications: information retrieval, biologic taxonomy, gene
feature mapping, ...
 Cosine measure: If d1 and d2 are two vectors (e.g., term-frequency
vectors), then
cos(d1, d2) = (d1  d2) /||d1|| ||d2|| ,
where  indicates vector dot product, ||d||: the length of vector
d
31
 Example: Cosine Similarity
 cos(d1, d2) = (d1  d2) /||d1|| ||d2|| ,
where  indicates vector dot product, ||d|: the length of vector d

 Ex: Find the similarity between documents 1 and 2.

d1 = (5, 0, 3, 0, 2, 0, 0, 2, 0, 0)
d2 = (3, 0, 2, 0, 1, 1, 0, 1, 0, 1)

d1d2 = 5*3+0*0+3*2+0*0+2*1+0*1+0*1+2*1+0*0+0*1 = 25
||d1||= (5*5+0*0+3*3+0*0+2*2+0*0+0*0+2*2+0*0+0*0)0.5=(42)0.5
= 6.481
||d2||= (3*3+0*0+2*2+0*0+1*1+1*1+0*0+1*1+0*0+1*1)0.5=(17)0.5
= 4.12
cos(d1, d2 ) = 0.94

32
Chapter 2: Getting to Know Your
Data

 Data Objects and Attribute Types

 Basic Statistical Descriptions of Data

 Measuring Data Similarity and Dissimilarity

 Summary

33
 Summary
 Data attribute types: nominal, binary, ordinal, interval-scaled,
ratio-scaled
 Many types of data sets, e.g., numerical, text, graph, Web,
image.
 Gain insight into the data by:
 Basic statistical data description: central tendency,
dispersion, graphical displays
 Data visualization: map data onto graphical primitives
 Measure data similarity
 Above steps are the beginning of data preprocessing.
 Many methods have been developed but still an active area of
research.

34
 References
 W. Cleveland, Visualizing Data, Hobart Press, 1993
 T. Dasu and T. Johnson. Exploratory Data Mining and Data Cleaning. John Wiley, 2003
 U. Fayyad, G. Grinstein, and A. Wierse. Information Visualization in Data Mining and
Knowledge Discovery, Morgan Kaufmann, 2001
 L. Kaufman and P. J. Rousseeuw. Finding Groups in Data: an Introduction to Cluster
Analysis. John Wiley & Sons, 1990.
 H. V. Jagadish, et al., Special Issue on Data Reduction Techniques. Bulletin of the Tech.
Committee on Data Eng., 20(4), Dec. 1997
 D. A. Keim. Information visualization and visual data mining, IEEE trans. on Visualization
and Computer Graphics, 8(1), 2002
 D. Pyle. Data Preparation for Data Mining. Morgan Kaufmann, 1999
 S. Santini and R. Jain,” Similarity measures”, IEEE Trans. on Pattern Analysis and
Machine Intelligence, 21(9), 1999
 E. R. Tufte. The Visual Display of Quantitative Information, 2nd ed., Graphics Press,
2001
 C. Yu , et al., Visual data mining of multimedia data for social and behavioral studies,
Information Visualization, 8(1), 2009
35