Broderick Et Al Census of The Bacterial Community of The Gypsy Moth Larval Midgut by Using Culturing and Culture
Broderick Et Al Census of The Bacterial Community of The Gypsy Moth Larval Midgut by Using Culturing and Culture
1
0099-2240/04/$08.00⫹0 DOI: 10.1128/AEM.70.1.293–300.2004
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Little is known about bacteria associated with Lepidoptera, the large group of mostly phytophagous insects
comprising the moths and butterflies. We inventoried the larval midgut bacteria of a polyphagous foliivore, the
gypsy moth (Lymantria dispar L.), whose gut is highly alkaline, by using traditional culturing and culture-
independent methods. We also examined the effects of diet on microbial composition. Analysis of individual
third-instar larvae revealed a high degree of similarity of microbial composition among insects fed on the same
diet. DNA sequence analysis indicated that most of the PCR-amplified 16S rRNA genes belong to the ␥-Pro-
teobacteria and low GⴙC gram-positive divisions and that the cultured members represented more than half
of the phylotypes identified. Less frequently detected taxa included members of the ␣-Proteobacterium, Acti-
nobacterium, and Cytophaga/Flexibacter/Bacteroides divisions. The 16S rRNA gene sequences from 7 of the 15
cultured organisms and 8 of the 9 sequences identified by PCR amplification diverged from previously reported
bacterial sequences. The microbial composition of midguts differed substantially among larvae feeding on a
sterilized artificial diet, aspen, larch, white oak, or willow. 16S rRNA analysis of cultured isolates indicated that
an Enterococcus species and culture-independent analysis indicated that an Entbacter sp. were both present in
all larvae, regardless of the feeding substrate; the sequences of these two phylotypes varied less than 1% among
individual insects. These results provide the first comprehensive description of the microbial diversity of a
lepidopteran midgut and demonstrate that the plant species in the diet influences the composition of the gut
bacterial community.
293
294 BRODERICK ET AL. APPL. ENVIRON. MICROBIOL.
Beneficial Insects Introduction and Research Laboratory, U.S. Department of labeled with the dye 6-carboxyfluorescein (6-FAM) (16, 42). All oligonucle-
Agriculture-Agricultural Research Services, Newark, Del. (DE colony). In addi- otide primers were synthesized by the Biotechnology Center at the University
tion, egg masses were collected from field sites in Wisconsin (WI field) and of Wisconsin—Madison. PCR contents for a 50-l volume were 25 ng of
Michigan (MI field). Wisconsin egg masses were collected on 24 March 1999 template DNA, 0.5 l of 20 M forward (27F) and reverse (1492R) primers,
from five trees (four oak trees [Quercus sp. L.] and one maple tree [Acer sp. L.]) 0.8 l of 10 mM deoxynucleoside triphosphates (Gibco BRL, Grand Island,
on a rural property in York Township, Dane County (R11E, T9N). The Michigan N.Y.), 5 l of 10⫻ Taq polymerase buffer, and 0.5 l of Taq DNA polymerase
egg masses were collected 23 March 1999 from a newly established population in (2.5 U; Promega, Madison, Wis.). The thermal cycling conditions were an
a mixed oak and aspen (Quercus sp. and Populus sp.) stand in Lincoln Township, initial 3-min denaturation step at 94°C, 30 cycles at 94°C for 30 s, 55°C for
Clare County (R5W, T18N). Field-collected egg masses were kept in plastic bags 90 s, and 72°C for 2.5 min, with a final 5-min extension at 72°C. A hot-start
at 4°C from the time of collection until they were used in assays. Assays were protocol (34) was used with Taq polymerase added to each reaction after 1
timed to coincide with Wisconsin field larval emergence (around 5 May 1999). min of the 3-min initial 94°C denaturation step. All reactions were carried out
Gypsy moth larvae were reared as described in Broderick et al. (10). Briefly, in 0.2-ml reaction tubes in a Robocycler 96 (Stratagene, La Jolla, Calif.).
egg masses were surface sterilized with a solution of Tween 80 (polyoxyethylene Each PCR was examined by electrophoresis in a 0.8% agarose gel, and gels
sorbitan monooleate), bleach, and distilled water. Larvae were reared in 17-cm- were visualized by staining with ethidium bromide.
diameter petri dishes on a sterile artificial diet (USDA Hamden Formula) under (iii) T-RFLP analysis. Samples of PCR amplification products from 10 indi-
a 16 h:8 h (light:dark) photoperiod at 25°C. Colony (MA and DE) larvae were vidual larvae exposed to each diet type and from each population source were
reared in a quarantine facility at the University of Wisconsin—Madison Depart- digested (37°C for 3 h) with the restriction endonucleases AluI and HhaI (Pro-
ment of Entomology. To reduce the potential for introduction of pathogens into mega). Digestion reactions (10 l total volume) contained 5 l of PCR product,
the quarantine facility, field egg masses and larvae (WI and MI) were reared in 0.3 l of enzyme, and 0.3 l of the appropriate incubation buffer according to the
a separate campus quarantine facility at the University of Wisconsin—Madison synthesis protocol. Samples (5 l) of the digestion reactions were mixed with 19
Biotron under the same conditions as above. Larvae were provided with artificial l of deionized formamide and 1 l of an internal standard (CST ROX 200-2000;
diet after emergence and provided a new diet every 48 h. BioVentures, Inc., Murfreesboro, Tenn.), denatured for 5 min at 95°C, and kept
(ii) Larvae from a common source feeding on multiple tree species. Gypsy on ice until they were loaded into an autosampler. The samples were analyzed by
moth egg masses from culture NJSS at the USDA-APHIS laboratory (MA capillary electrophoresis in an ABI DNA sequencer (model 310; Perkin-Elmer,
colony) were reared according to methods described previously (10, 11, 18). Foster City, Calif.) (39). Data from individual samples were analyzed with Ge-
Two-year-old white oak (Q. alba L.), larch [Larix laricina (Du Roi) K. Koch], neScan 3.1 (Perkin-Elmer) and were compared to other samples by using the
and quaking aspen (P. tremuloides Michaux) trees were obtained from the Wis- Ribosomal Database Project II (RDP II) T-RFLP Online Analysis software (46).
consin Department of Natural Resources Nursery, Hayward. Two-year-old scrub To assess the similarity of microbial composition among midguts, T-RFLP pro-
willow (Salix fragilis L.) trees were obtained from the Iowa State Nursery, Ames. files from replicate samples were aligned and analyzed by pairwise comparison
The trees were chilled at 4°C for 20 days after receipt to ensure good bud (40). Similarity values, Sab, were determined by using the equation 2 Nab / (Na ⫹
development. Following the chilling period, the trees were planted in 12-liter Nb), where Nab is the number of peaks in common between samples and Na and
pots in Sunshine Mix LC1 (Sungro Horticulture, Bellevue, Wash.) and flood Nb are the number of total peaks in each sample.
irrigated. The trees were grown in a greenhouse at 25°C under a 16 h:8 h (iv) Cloning 16S rRNA genes. Total DNA from pools of 10 larvae from all
(light:dark) photoperiod. Trees were watered every 5 days until bud develop- population and diet treatment samples was PCR-amplified separately by using
ment; following bud development the trees were watered every 2 to 3 days. the bacterial primers 27F and 1492R. Clone libraries were constructed by ligating
TABLE 1. Bacterial phylotypes identified by culturing and culture-independent analysis of third-instar gypsy moth midguts based on 16S
rRNA gene sequence analysis
Identified by culturing
and culture-
independent
analysis
NAB1 ␥-Proteobacteria Pseudomonas P. putida 1.8 ⫻ 105 1.1 ⫻ 107 3.6 ⫻ 105 3.5 ⫻ 105
NAB2 ␥-Proteobacteria Pseudomonas 2.2 ⫻ 106
NAB3 ␥-Proteobacteria Enterobacter Uncultured soil 4.8 ⫻ 106 7.0 ⫻ 107 8.9 ⫻ 107
bacterium
F42326.1
NAB4 ␥-Proteobacteria Pantoea P. agglomerans 2.5 ⫻ 105 3.7 ⫻ 104 1.5 ⫻ 107
NAB5 ␥-Proteobacteria Serratia S. marcescens 4.6 ⫻ 104 7.5 ⫻ 108 4.0 ⫻ 104
NAB6 low G⫹C gram positive Bacillus 4.0 ⫻ 108
NAB7 low G⫹C gram positive Staphylococcus S. lentus 8.1 ⫻ 104 9.1 ⫻ 106 4.5 ⫻ 106
NAB8 low G⫹C gram positive Staphylococcus S. cohnii 2.9 ⫻ 106 4.7 ⫻ 106 1.3 ⫻ 107
NAB9 low G⫹C gram positive Staphylococcus S. xylosus 1.3 ⫻ 106 1.07 ⫻ 105
NAB10 low G⫹C gram positive Paenibacillus 2.6 ⫻ 106
NAB11 low G⫹C gram positive Enterococcus E. faecalis 1.5 ⫻ 108 1.9 ⫻ 106 3.6 ⫻ 108 1.4 ⫻ 104 2.1 ⫻ 107
NAB12 low G⫹C gram positive Enterococcus 4.8 ⫻ 107 4.1 ⫻ 106 2.4 ⫻ 105
NAB13 Actinobacterium group Rhodococcus 1.2 ⫻ 107
NAB14 Actinobacterium group Microbacterium 5.2 ⫻ 108 2.2 ⫻ 106
NAB15 CFBb group 7.4 ⫻ 104
Identified by culture-
independent
analysis only
NAB16 ␣-Proteobacteria Agrobacterium ⫹ ⫹ ⫹
NAB17 ␥-Proteobacteria Enterobacter ⫹ ⫹ ⫹ ⫹ ⫹
NAB3 ␥-Proteobacteria Enterobacter ⫹
dissected, sonicated, and stained with 4,6-diamino-2-phenylindole (DAPI) to Variation in bacterial composition among individual larvae.
determine the total number of bacterial cells per gut (72). For each individual
Comparisons of the T-RFLP profiles of the bacteria in repli-
midgut, twenty randomly selected fields were counted by epifluorescence micros-
copy (Olympus America Inc., Melville, N.Y.). cate larvae from either the same population source or the same
Nucleotide sequence accession numbers. The compiled 16S rRNA sequences diet treatment showed a high similarity index of between 0.96
have been deposited in the GenBank database under accession numbers and 1.00 (Tables 2 and 3). These kinds of similarities were also
AY39005 to AY39035.
reflected in the types of colony morphologies obtained in the
culture-dependent analyses. The majority of isolates examined
RESULTS were found in ⬎90% of the larvae examined and all were
isolated from ⬎50% of the larvae in a given treatment.
Bacterial diversity in third-instar gypsy moth midguts. Eval- To identify factors associated with variation in microbial
uation of the midgut bacteria of gypsy moth larvae using a
composition, we compared PCR-amplified 16S rRNA genes
combination of 16S rRNA analysis of the cultured bacteria and
isolated from the midguts of gypsy moth from lab and field
culture-independent PCR amplification of 16S rRNA se-
populations by using T-RFLP analysis. The T-RFLP profiles of
quences led to the identification of 23 phylotypes (Table 1).
Approximately 65% of these phylotypes are newly reported the MA colony and WI field samples and those of the DE
sequences (⬍98% identity to any of the bacterial 16S rRNA colony and MI field all fed artificial diet were very similar
sequences within GenBank). The majority (70%) of these bac- (Table 2). Moreover, these pairs differed only slightly (less
terial sequences fell within the low G⫹C gram-positive and than 6%) from each other (Table 2), indicating that egg source
␥-Proteobacteria divisions. Actinobacterium, Cytophaga/Flexi- did not have a significant effect on the bacteria of the gypsy
bacter/Bacteroides, and ␣-Proteobacteria accounted for 17, 9, moth midgut. Given these similarities, only the MA colony
and 4% of the sequences, respectively. population was used to examine the variation in bacterial di-
296 BRODERICK ET AL. APPL. ENVIRON. MICROBIOL.
TABLE 2. Pairwise comparisons for similarity of T-RFLPs from the terial composition of the midgut, 16S rRNA sequences derived
midgut of gypsy moth from lab and field populations feeding on an from midguts were analyzed in silico by using the RDP II
artificial diet
T-RFLP Analysis Program (43) and were compared to actual
Coefficient Coefficient between populations T-RFLPs from the same samples. In general, 16S rRNA se-
Population within MA DE quences showed the predicted peak pattern, and all sequences
population WI field
colony colony could be accounted for in the T-RFLP. However, this analysis
also demonstrated that multiple fragments were found at the
MA colony 0.996
DE colony 0.997 0.952 same peak position regardless of the restriction enzyme, espe-
WI field 0.996 0.994 0.958 cially among similar 16S sequences. These results are consis-
MI field 0.998 0.955 0.992 0.953 tent with previous indications of the resolution limits of T-
RFLP analysis in assessing the full extent of diversity (23).
However, these results also indicate that T-RFLP analysis is
useful as a first step to assess sample diversity and identify
treatments or conditions for further investigation.
versity due to diet. Diet greatly affected the T-RFLP profiles
(Fig. 1), as indicated by the lower similarity values of T-RFLP
profiles from different diets (Table 3). DISCUSSION
Comparison of bacterial diversity revealed by culturing and
These results demonstrate that the microbial diversity of
culture-independent analysis. Culturing yielded 15 distinguish-
the gypsy moth midgut is relatively simple, with 15 phylo-
able types of bacteria across all diet treatments from gypsy
types at its most complex and 7 phylotypes at its simplest.
moth midguts based on cellular and colony morphological
The relative simplicity of this community is especially ap-
traits; 93% of these isolates could be assigned to a genus, while
parent compared to other gut environments, such as the
only 47% could be assigned to a species by using 16S rRNA
human intestine and termite hindguts, which contain at least
analysis (Table 1). DAPI staining and microscopic enumera-
500 and 50 phylotypes, respectively (54, 76). We expect that
tion indicated that there were 4 ⫻ 108 viable bacterial cells/gut.
the census presented here is fairly complete given that we
The phylotypes indicated by culture-independent methods ex-
can account for more than 40% of the viable cells by cul-
hibited greater divergence and diversity than phylotypes recov-
turing techniques, and all of the peaks in the T-RFLP anal-
ered by culturing. In addition to the 15 phylotypes recovered by
ysis are accounted for in the PCR-generated 16S rRNA
culturing, 9 phylotypes were indicated based on 16S rRNA
sequences. However, there may well be minor species whose
analysis in gypsy moth midguts across all diet treatments; only
FIG. 1. T-RFLP profiles of third-instar midguts of gypsy moth feeding on diverse diets. Each profile is representative of 10 individual larvae. Downloaded from https://journals.asm.org/journal/aem on 13 July 2025 by 2603:7000:d1f0:b800:d5ec:fe3c:4146:e67d.
guts are generally neutral to acidic (pH 4 to 7), while lepidop- gut pH, detoxifying plant allelochemicals, and maintaining the
teran midguts are typically pH 8 to 10. However, values as high midgut microbial community structure. Midgut pH is impor-
as 12.4 have been reported for gypsy moth (5, 22, 29). In tant from the perspective of both the microbes and the insect.
addition, the diverse plants on which this insect feeds contain A predominant member of the midgut microbial community,
an array of allelochemicals, such as phenolics, tannins, and E. faecalis, is commonly found at higher pH (8 to 9) and
terpenoids, many of which are toxic to microorganisms (28). acidifies its environment through its metabolism (45). This
Therefore, this extreme environment may have selected for could confer some advantage to the insect host, as some mi-
unusual phenotypes, resulting in unusual phylotypes. crobial toxins of lepidoptera, such as Bacillus thuringiensis
The microbial midgut inhabitants seem likely to benefit the toxin, are activated by alkaline conditions (75). Thus, E. fae-
insect host, based on observations of other insect systems (7, 9, calis might help protect this insect from B. thuringiensis toxin by
14, 31). Examples of such benefits may include modifying mid- decreasing the midgut pH. Previous work has shown that lar-
298 BRODERICK ET AL. APPL. ENVIRON. MICROBIOL.
vae that are more susceptible to B. thuringiensis toxin have effects on the larvae (69, 70). However, host plant switching
smaller populations of E. faecalis in their midguts (11). Bacte- can alter the performance of gypsy moth parasitoids and could
ria may also contribute to their own survival by managing likewise affect the composition of the bacterial community
midgut pH to enhance their own growth or exclude competing (36). The relative stability of the gut bacterial community is
microorganisms. While numerous studies have investigated mi- also unknown. Further analysis of this system, including iden-
crobial diversity in neutral and acidic environments (6, 24, 27, tification of the source of microbial inoculum in insects fed on
32, 56, 66), few have examined bacteria in highly alkaline sterilized artificial diet, use of methods, such as metagenomics
environments, particularly in nonaquatic ecosystems (25, 30). (59), that link function to phylogeny, and improved culturing
Further analysis of these bacteria may identify adaptations that techniques will advance our understanding of the role of mi-
permit them to function in this extreme environment, and crobes in the gypsy moth midgut.
whether they have a role in maintaining it.
The broad range of phytochemicals consumed by this ACKNOWLEDGMENTS
polyphagous herbivore may present a challenge for both the We thank Frank Martin (USDA-APHIS), Roger Fuester (Beneficial
gypsy moth and its associated bacteria. Toxic compounds may Insects Introduction and Research Laboratory, USDA), Dave Schu-
select for bacteria that can metabolize them, and these bacteria macher (WI-DATCP), and Roger Mech (MI-DNR) for their assis-
tance in obtaining gypsy moth egg masses. We also thank Trenten
may degrade ingested compounds that are otherwise toxic to Marty (WI-DNR) for providing the trees. We are grateful to Madeline
the insect (41). For example, the 16S rRNA gene sequence of Fischer and Angela Kent (University of Wisconsin—Madison) for
one cultured isolate from the gypsy moth (NAB13) was most their assistance with T-RFLP analysis.
similar to a Rhodococcus species, and recent work identified an This work was funded by the Wisconsin Department of Natural
Resources, McIntire-Stennis Projects 4054 and 4529, the Howard
enzyme produced by R. erythropolis DCL14 (73) that degrades Hughes Medical Institute, and Hatch Projects 4038 and 5234 from the
monoterpenes, a widespread class of phytochemicals that can College of Agricultural and Life Sciences at the University of Wiscon-
be toxic to many insect larvae and adults (38). The gypsy moth sin—Madison.
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