Biotechnological Approaches To Enhance Plant Secondary Metabolites: Recent Trends and Future Prospects 1st Edition Mohd. Shahnawaz (Editor) Download
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Biotechnological Approaches
to Enhance Plant Secondary
Metabolites
Biotechnological Approaches
to Enhance Plant Secondary
Metabolites
Edited by
Mohd. Shahnawaz
First edition published 2022
by CRC Press
6000 Broken Sound Parkway NW, Suite 300, Boca Raton, FL 33487-2742
and by CRC Press
2 Park Square, Milton Park, Abingdon, Oxon, OX14 4RN
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DOI: 10.1201/9781003034957
Chapter 2 Generation of Plant Mutant Lines Using Gamma Radiation with Enhanced
Secondary Metabolite Contents��������������������������������������������������������������������������������� 27
Lata I. Shukla, P. Vivek Vardhan, T. K. Devika, Sayan Roy
and Sourav Bhatacharya
vii
viii Contents
Index���������������������������������������������������������������������������������������������������������������������������������������������� 165
Preface
We have been dependent on plants for food, furniture, construction, and fuel since prehistoric times.
Plants in all forms have tendered their services to mankind. We have a long history of plants cultiva-
tion and domestication to meet our basic needs. People living in different continents of the world
used plants to treat various diseases. Accordingly, various systems of medicines were established
viz. Ayurvedic, Unani, Siddha, Homeopathy, Tibetan, folklore and Chinese system of medicines,
etc. Due to the advancement of science and technologies, various other non-conventional methods
to treat the diseases were also identified. Each system of medicine is having advantages and dis-
advantages. The system which utilizes plant-based natural products for the discoveries of drugs
have attracted the attention globally, due to its least or no side effects. Plant synthesized various
secondary metabolites besides its primary metabolites to resist the changing environmental stress
and to cross-talk with other biological entities. These secondary metabolites have also been found to
have various activities against numerous human diseases. So, to harvest these medicinal principles
from the medicinal plants, people have exploited the plant germplasm from the natural habitat at
an alarming rate. Most of the medicinal plants are now considered endangered. As per the reports,
the contents of these naturally occurring medicinal components were found low in most of the
plants. So, it was needed to enhance the contents of such key principal components of the plants.
Various people around the globe tried to enhance the contents of the secondary metabolites in the
plants using various methods and were reported significant enhancement of the targeted second-
ary metabolites in the tested plants. The most common methods employed to enhance the contents
of the plant secondary metabolites, viz. abiotic and biotic elicitation at in vitro and in situ levels,
mutation breeding, plant tissue culture techniques, genetic engineering, RNAi, CRISPR-CAS9
technology etc.
Various literature on plant secondary metabolites is available; however, there is a lack of books
that provide an overview of all the methods involved in the enhancement of the plant secondary
metabolite.
This edited volume offers 10 excellent chapters, contributed by various experienced research-
ers, to fill the lacunae in the literature. Chapter 1 introduces plant secondary metabolites as the key
drivers of plant’s defence mechanisms. Chapter 2 describes the gamma radiations usage to enhance
the contents of plant secondary metabolites. Chapter 3 and 4 provides an overview of the impact of
salinity stress and the role of fungal endophytes to enhance secondary metabolite contents in plants.
Chapter 5 reports on the hydroponic cultivation approaches to enhance the contents of the second-
ary metabolites in plants. Chapters 6 and 7 highlight the tissue culture techniques and hairy root
cultures the enhancement of plant secondary metabolites in plants. Chapter 8 documents the impact
of brassinosteroids to enhance the secondary metabolite production in plants. Chapters 9 and 10
discuss the application of RNAi technology and CRISPR-CAS9 approaches to enhance contents of
plant secondary metabolites.
ix
Acknowledgements
I bow my head before Almighty Allah the most beneficent and most merciful for his endless bless-
ings on me to complete this book. The financial support provided by DST-SERB in the form of the
National Post-doctoral Fellowship (DST-SERB (PDF/2017/000178) award is dully acknowledged.
I am highly thankful to all the anonymous reviewers, who reviewed the chapters thoroughly and
allowed us to make wise decisions about the selection of the best chapters in this current volume.
It is of immense pleasure to acknowledge the help and support tendered by the editorial and
production team (especially Renu Upadhyay and Jyotsna Jangra) of CRC Press, Taylor & Francis
Group.
Last but not least, I am thankful to my parents (Mr. Shamas-ud-Din & Mrs. Muneera Begum)
and my better half (Mrs. Mubeena Kousar) for their kind love and support throughout this work.
xi
Editor
Dr. Mohd. Shahnawaz is currently working as a Lecturer at the Department of Botany, Govt.
Degree College Paloura, Mishriwala, Jammu and Kashmir, India, on an academic arrangement
basis (2020–2021). In 2020, he was selected as a post-doctoral fellow at Yeungnam University,
Gyeongsan, North Gyeongsang, South Korea; however, due to COVID-19 scenario, he was not
able to join. He has also completed post-doctoral research (funded by DST-SERB, Govt. of India)
from the Plant Biotechnology Division, CSIR-Indian Institute of Integrative Medicine, Jammu
& Kashmir, India. He worked to enhance the contents of secondary metabolites in Coleus for-
skohli using in vitro salinity stress. Previously, he has worked as a Lecturer in Botany at the
Department of Botany, Govt. Degree College Kishtwar, Jammu and Kashmir, India (2016–2017)
on an academic arrangement basis. He has earned his M. Phil. and Ph.D. in Botany from the
Department of Botany, Savitribai Phule Pune University, Maharashtra, India under the guid-
ance of Prof. A. B. Nadaf and Prof. A. B. Ade in 2010 and 2016. He is the recipient of various
fellowships awarded by the Savitribai Phule Pune University, University Grants Commission
(UGC), and Department of Science and Technology (DST)-Science Engineering and Research
Board (SERB), India. His research interests are focused on ecology, microbiology, bioremedia-
tion of plastic and plant biotechnology. He has served as a referee and editorial board member of
various journals of International repute. In 2019, he was awarded the Young Scientist Award by
VDGOOD Professional Associations, Vishakhapatnam, India. He has published more than 20
research articles in peer-reviewed international journals and authored 7 books. Previously, he had
served as an Academic Editor of the Asian Journal of Biology (Science Domain International).
xiii
Contributors
Amir Khan Sharada L. Deore
Department of Botany Department of Pharmacognosy and
Aligarh Muslim University Phytochemistry
Aligarh, India Government College of Pharmacy
Amravati, India
Barket Ali
Department of Botany T. K. Devika
Government Degree College Kilhotran Department of Biotechnology
Kishtwar, India Pondicherry University
Kalapet, Puducherry, India
Moh Sajid Ansari
Department of Botany Kashif Hussain
Aligarh Muslim University School of Pharmacy
Aligarh, India Glocal University
Saharanpur, India
Jay Prakash Awasthi
Department of Life Science and Bioinformatics Touseef Hussain
Assam University Department of Botany
Silchar, India Aligarh Muslim University
Aligarh, India
Bhushan A. Baviskar
Department of Pharmacognosy and Mulla Javed
Phytochemistry Institute of Bioinformatics and Biotechnology
Government College of Pharmacy Savitribai Phule Pune University
Amravati, India Pune, India
xv
xvi Contributors
Rukamsingh Tomar
Department of Biotechnology and
Biochemistry
Junagadh Agricultural University
Junagadh, India
1 Plant Secondary Metabolites—
The Key Drivers of Plant’s
Defence Mechanisms
A General Introduction
D. Sruthi and C. Jayabaskaran
CONTENTS
1.1 Introduction............................................................................................................................... 1
1.2 Classification of Secondary Metabolites...................................................................................2
1.2.1 Terpenes (Terpenoids).................................................................................................... 2
1.2.1.1 Synthesis of Terpenes..................................................................................... 3
1.2.1.2 Classification of Terpenes...............................................................................4
1.2.1.3 Extraction and Identification of Terpenes....................................................... 5
1.2.1.4 Role and Application of Terpenes................................................................... 5
1.2.1.5 Essential Oil.................................................................................................... 6
1.2.2 Alkaloids........................................................................................................................ 8
1.2.2.1 Synthesis of Alkaloids.................................................................................... 8
1.2.2.2 Classification of Alkaloids..............................................................................8
1.2.2.3 Extraction and Identification of Alkaloids......................................................9
1.2.2.4 Role and Application of Alkaloids ................................................................9
1.2.3 Phenolics...................................................................................................................... 10
1.2.3.1 Synthesis of Phenolics.................................................................................. 10
1.2.3.2 Classification of Phenolics............................................................................ 12
1.2.3.3 Extraction and Identification of Phenolics.................................................... 13
1.2.3.4 Role and Application of Phenolics................................................................ 13
1.3 Current Biotechnological Approaches for the Enhancement of Secondary Metabolite
Contents in Plants.................................................................................................................... 13
1.4 Conclusion............................................................................................................................... 16
Acknowledgements........................................................................................................................... 17
References......................................................................................................................................... 17
1.1 INTRODUCTION
Plants are rich in bioactive phytoconstituents with enormous ethnopharmacological potential and
these high-value phytochemicals are broadly categorized into two classes (primary and second-
ary metabolites) based on their function (Hussein and El-Anssary 2019). The primary metabolites
are distributed widely in all plants and carry out metabolic functions which are crucial for normal
physiological growth and energy requirements of the plants and are normally evident (Hussain
et al. 2012; Wink 2016). In contrast, plants synthesize myriads of organic compounds; most of them
do not involve directly in plant growth and development. These phytochemicals, normally known
as secondary metabolites, are distributed differentially in restricted taxonomic groups of the plant
DOI: 10.1201/9781003034957-1 1
2 Biotechnological Approaches to Enhance Plant Secondary Metabolites
kingdom (Tiwari and Rana 2015). Briefly, secondary metabolites are normally not essential for
plant growth and its development, but they are essential for surviving in the ecosystem through
chemical defence (Iriti and Faoro 2009). Plant secondary metabolites are the chemical constitutes
primarily responsible for the chemical defences to regulate the relationship between the plant and
their ecosystem and further take part in protecting plants from abiotic and biotic stress conditions
(Mazid et al. 2011). Secondary metabolites are not essentially synthesized under all circumstances
but produced undoubtedly for really appreciated reasons, few of such include, toxic materials to
protect the plant from predators, as volatile attractants or as an agent to impart colour and thereby
warn or attract other species and thus, it is evident that all of them play some crucial function for
the safety of their producer (Adeyemi and Mohammed 2014). Plant defence metabolites arise from
the isoprenoid, the alkaloid and the phenylpropanoid pathways which form three major second-
ary metabolite classes viz., terpenes, alkaloids and phenolics, respectively (Iriti and Faoro 2009).
Generally, precursors for secondary metabolite synthesis are products of the primary metabolism
(Iriti and Faoro 2004). Besides their role in plant protection, secondary metabolites are well studied
for various pharmacological and medicinal potentials and many drugs of natural origin against
human ailments have been discovered from different plants (Velu et al. 2018).
Secondary metabolites provide major pharmacologically active high-value natural products used
to treat various diseases since ancient times and it ranges from migraine up to cancer (Hussein and
El-Anssary 2019; Jain et al. 2019). Vinca alkaloids (vinblastine and vincristine), taxanes [e.g. pacli-
taxel (Taxol) and docetaxel (Taxotere)] and combretastatin are some of the secondary metabolites
used to treat cancer (Hartwell 1984; Kingston 2012; Pinney et al. 2012; Roussi et al. 2012). Further,
secondary metabolite drugs have been obtained from plants with anti-diabetic (e.g. galegine alka-
loid from Galega officinalis,), anti-inflammatory (e.g. curcumin and resveratrol) and anti-viral
(e.g. betulinic acid and calanolides) efficacies (Min et al. 1999; Dharmaratne et al. 2002; Furst and
Zudorf 2014; Rios et al. 2015). So there is a huge demand for medicinal plants to isolate pharma-
ceutically active molecules (Dar et al. 2017a). These secondary metabolites are produced in low
quantity in plants; hence, a large amount of plant material is used to extract the drug molecules
(Dar et al. 2017b). To meet the demand of pharmaceutical companies, huge medicinal plants are
being exploited at a mass level. This practice leads to threat the germplasm and various plants were
extinct from the natural environment (Maxted et al. 2020). Hence, it was needed to enhance the
contents of such pharmaceutically active plant secondary metabolites to reduce the exploitation of
the medicinal plants from the natural environment (Jimenez-Garcia et al. 2013). With this regard,
various biotechnological strategies were used by different workers across the globe (Guerriero et al.
2018). So, in this chapter, an effort was made to overview the plant secondary metabolites, to dis-
cuss different classes of plant secondary metabolites, to discuss the biosynthetic pathways that took
part in the production of plant secondary metabolites and to highlight various approaches adopted
to enhance the secondary metabolite contents in plants.
2008). Terpenes are the essential metabolite for photosynthesis and also for regulating the plant
metabolic processes (Bramley 1997; Goodwin and Mercer 2003). Even though most of the terpenes
are categorized as secondary metabolites, extremely few among them (e.g. steroids) are included in
the primary metabolite class (Bramley 1997; Goodwin and Mercer 2003).
FIGURE 1.1 Isoprenoid pathway from acetyl-CoA. (Adapted from Iriti and Faoro 2009.)
4 Biotechnological Approaches to Enhance Plant Secondary Metabolites
synthesized and is converted into all the different terpenoids found in nature (Bach 1987; Chappell
1995; Goodwin and Mercer 2003).
TABLE 1.1
Classification of Terpenoids
Name of Terpenes Molecular Formula
Hemiterpenes C5H8
Monoterpenes C10H16
Sesquiterpenes C15H24
Diterpenes C20H32
Sesterterpenes C25H40
Triterpenes C30H48
Tetraterpenes C40H64
Polyterpenes (C5H8)n
Plant Secondary Metabolites—The Key Drivers of Plant’s Defence Mechanisms 5
Diterpenes with C20 skeleton are derived from geranylgeranyl-PP and consist of acyclic,
monocyclic, bicyclic, tricyclic or tetracyclic diterpenes (Dogbo and Camara 1987; Goodwin and
Mercer 2003). More than 500 diterpenes are reported. Agathic acid, phytol, α-camphorene, cassaic
acid, steviol, etc. are some of the diterpenes (Goodwin and Mercer 2003). The sesterterpenes have
C25 skeleton and are found together with diterpenoids in lichens, seaweeds, fungi, marine organ-
isms and higher flowering plants and originate from geranylfarnesyl pyrophosphate (Bramley 1997;
Goodwin and Mercer 2003; Dewick 2009; Osbourn and Lanzotti 2009; Gonzalez 2010; Cimmino
et al. 2014). Ophiobolin A and bilosespene A are the examples for sesterterpenes from fungal and
marine metabolites, respectively (Rudi et al. 1999; Au et al. 2000). Leucosesterterpenone and leu-
costerlactone are the tetracyclic sesterterpenes isolated and identified from plant Leucosceptrum
canum (Hussain et al. 2008). Sesterterpenoids have been investigated recently for their chemical,
structural and biological characterizations and possess a wide spectrum of biological properties
against microorganisms and many of them exhibit strong anticancer efficacy (Gonzalez 2010; Wang
et al. 2013; Cimmino et al. 2014; Evidente et al. 2015).
Triterpenes (C30 skeleton) represent another large set of isoprenoid constituents (Goodwin and
Mercer 2003) and are formed from farnesyl-PP (two molecules) through a reductive head-to-head
condensation (Iriti and Faoro 2009). It consists of tetracyclic derivatives and pentacyclic compounds
(Goodwin and Mercer 2003). Lanosterol, euphol, lupeol, cycloartenol, etc. are some of the cyclic
triterpenoids (Goodwin and Mercer 2003). Phytosterols with a cyclopentanoperhydrophenanthrene
ring system are the derivatives of tetracyclic triterpenes, whereas saponins are the water-soluble
glycosidic triterpenes (Goodwin and Mercer 2003). The tetraterpenes (C40) are synthesized from
two geranylgeranyl-PP molecules through head-to-head condensation (Wendt and Schulz 1998) and
contain only one group—the carotenoid pigments (α-and β-carotene, xanthophylls, etc.) (Goodwin
and Mercer 2003). They are mainly seen in chloroplasts and guard it against photodynamic sen-
sitization and further contribute to the light-harvesting process of photosynthesis (Bramley 1997;
Goodwin and Mercer 2003). Polyterpenes (e.g. natural rubber), on the other hand, are the terpenoids
widely seen in plants with higher molecular weight (Bramley 1997; Goodwin and Mercer 2003) and
composed of more than a thousand isoprene units formed through the polymerization of geranyl-
geranyl-PP molecules (Wendt and Schulz 1998). The examples for different terpenoid classes are
shown in Figure 1.2.
which are useful as indicators of oil quality (Waterman 1993). The volatile oils are colourless
or may have a wide range of pale colours. The odour, another important physical parameter of
essential oil, can be classified into six major types viz., woody (odour of wood like sandal wood),
herbaceous (smell of green herbs like dill), fruity (odour of fruits), spicy (smell of spices), green
(smell of cut grass, leaves, etc.) and flowery (odour of flowers) (Janardhanan and Thoppil 2004).
Hydrodistillation is the traditional and most preferable method for essential oil extraction and
can be performed using the Clevenger trap apparatus (AOAC 1975; Rassem et al. 2016; Irshad
et al. 2019). Upon boiling, essential oil escapes along with steam and forms a separate layer in the
Clevenger trap, which can be collected (AOAC 1975). This method is cheap, easy to conduct, suit-
able for field operation and the extracted oil will be free from oil glands/ducts/cells in the plant
tissues (Janardhanan and Thoppil 2004; Irshad et al. 2019). Steam distillation, solvent extrac-
tion, hydrosteam distillation, maceration, enfleurage, expression, microwave-assisted distillation,
microwave hydro diffusion and gravity, high-pressure solvent extraction, solvent-free microwave
extraction, supercritical carbon dioxide extraction, ultrasonic extraction and the phytonic process
are the other essential oil extraction methods (Ranjitha and Vijiyalakshmi 2014; Moghaddam and
Mehdizadeh 2017; Mohammed et al. 2019). Supercritical fluid extraction with supercritical CO2 is
an advanced technique that is a simple, fast, inexpensive, effective and virtually solvent-free sample
pre-treatment method for volatile oil extraction (Pourmortazavi and Hajimirsadeghi 2007). The
selection of extraction method is based on the plant material type and the desired end products
(Janardhanan and Thoppil 2004).
The essential oils are analyzed by various chromatographic techniques like thin-layer chroma-
tography (TLC), high-pressure liquid chromatography (HPLC), column chromatography and gas
chromatography (GC) (Janardhanan and Thoppil 2004). Nuclear magnetic resonance (NMR) spec-
troscopy can elucidate the structure of essential oil constituents, and mass spectroscopy (MS) is
used for direct analysis of mixtures (Janardhanan and Thoppil 2004). Recently, GC coupled with
MS (GC-MS) is extensively used for the separation, identification and quantification of essential oil
constituents (Janardhanan and Thoppil 2004).
Apart from its role as aroma contributors, the essential oil has many other functions in plants.
Essential oils lead to attracting certain insects and are reported to help in pollination (Pichersky and
Gershenzon 2002). Certain volatile oils can protect plants from the attack of animals, microbes and
plant parasites and are also involved in other non-defensive functions like temperature regulation,
decreased water loss and reduced mechanical abrasion (Janardhanan and Thoppil 2004; Sharifi-Rad
et al. 2017). Essential oil and its constituents are also reported for allelopathic potential (EI-Sawi
et al. 2019). Thus, they are involved in the ecology and physiology of plants (Janardhanan and
Thoppil 2004; Sharifi-Rad et al. 2017).
Essential oils are well recognized for their application as perfumery contributors, medicaments
and flavouring agents and hence, they have immense significance in various industries including
perfumery, pharmaceutical and food (Hamid et al. 2011; Chavez-Gonzalez et al. 2016; Sarkic and
Stappen 2018). They are used for perfuming soaps, deodorants, cosmetics, oral care products, for
flavouring food, beverage products, etc. (Sarkic and Stappen 2018). They are also used as labora-
tory reagents, as a solvent in the paint industry, as insecticides, as a component of polishes, pastes,
ink, etc. (Janardhanan and Thoppil 2004; Sarkic and Stappen 2018; Irshad et al. 2019; Kouznetsov
2019). They have also been reported to be used in pharmaceutical industries due to their antiseptic,
stimulative, carminative, expectorant, rubefacient, diuretic, counter-irritant and flavouring prop-
erties (Janardhanan and Thoppil 2004). Essential oils are familiar for their anti-spasmodic, anti-
bacterial, anthelmintic, anti-oxidant, disinfectant, anti-cancer, anti-fungal and anti-inflammatory
activities and also for irritable bowel syndrome treatment (Perez et al. 2011; Valeriano et al. 2012;
Khanna et al. 2013; Cash et al. 2016; Nazzaro et al. 2017; Torres-Martinez et al. 2017; Blowman
et al. 2018; Ferreira et al. 2018; Heghes et al. 2019; Man et al. 2019). They are used for the manufac-
ture of ointments, lotions, creams and various syrups (Dosoky and Setzer 2018; Sarkic and Stappen
2018). Essential oil is also used widely in aromatherapy (Ali et al. 2015).
8 Biotechnological Approaches to Enhance Plant Secondary Metabolites
1.2.2 Alkaloids
Alkaloids represent another vast group of heterogeneous, physiologically active and heterocyclic
secondary metabolites (Goodwin and Mercer 2003). More than 2000 alkaloids are reported from
plants and they are distributed in all plant parts. Alkaloids are majorly basic in nature (Goodwin and
Mercer 2003) and accumulate chiefly in four types of tissues viz., vascular sheaths, actively growing
tissue, epidermal and hypodermal cells, and latex vessels (Goodwin and Mercer 2003). They are
present in vacuoles and thus do not appear in young cells until vacuolation happens (Goodwin and
Mercer 2003). Alkaloids are frequently stored in tissues other than their site of synthesis. Likewise,
secondary structural modifications of alkaloids often occur at sites other than where primary
synthesis took place (Goodwin and Mercer 2003). Dicots are richer in alkaloids than monocots
whereas they have limited distributions in lower plants (Goodwin and Mercer 2003). Apocynaceae,
Rubiaceae, Solanaceae, Papaveraceae, Leguminosae and Fumariaceae are the families rich in
alkaloids, whereas those like Rosaceae and Labiatae contain alkaloids to a lesser extent (Goodwin
and Mercer 2003).
TABLE 1.2
Precursors and Different Classes of Alkaloids
Precursors Classes of Alkaloid Examples
Ornithine Pyrrolidine1, Tropane, 1. Cocaine, Atropine
Pyrrozidine, Polyamines2 2. Putrescine, Spermine, Spermidine
Leucine Pyrrole -
Lysine Piperidine, Indolizidine, -
Quinolizidine
Tyrosine Isoquinoline, Tetrahydroisoquinoline, 1. Morphine, Curarines, Papaverine
Benzyltetrahydroisoquinoline1, 2. Adrenaline, Noradrenaline
Catecholamines2
Tryptophan Indole1, Carbolines, Quinoline2, 1. Vindoline, Catharantine
Pyrrolindole, Indolamines3 2. Quinine, Capthotecin
3. Melatonin, Serotonin
Histidine Imidazole -
Phenylalanine Capsaicin, Ephedrine
Anthranilic acid Quinazoline, Quinoline, Acridine -
Purine Theobromine, Caffeine, Theophylline
Geranylgeranyl-diphosphate Terpenoidic -
Cholesterol Steroidal Solanin
Acetate Piperidine -
Nicotinic acid Pyridine Nicotine
(indolamines, carboline, indole, quinoline, pyrrolindole and ergot alkaloids), histidine (imidazole
alkaloids) and phenylalanine (Cordell et al. 2001; Facchini 2001; Hughes and Shanks 2002).
nutritional, pharmacological, toxicological and cosmetic potential (Iriti and Faoro 2009). They
have great importance in pharmaceutical industries because of their vast pharmacological activities
like anti-amoebic, anti-plasmodial, anti-oxidant, anti-cholinergic, anti-malarial, anti-hypertensive,
anxiolytic, anti-microbial, anti-inflammatory, anti-depressant, anti-HIV and anti-tumour properties
(Wright et al. 1991; Cowan 1999; Kupeli et al. 2002; Hesse 2003; Cos et al. 2008; Kulkarni and Dhir
2009; Liu et al. 2013; Yuan et al. 2019).
1.2.3 Phenolics
Phenolics are ubiquitous plant secondary metabolites and these phytoconstituents occur as free
phenols or their glycosides (Marinova et al. 2005; Hussein and El-Anssary 2019). This class of
compounds consists of more than 8000 biologically active constituents which range from simple
phenolic compounds to polymeric structures with a molecular weight of above 30000 Da (Marinova
et al. 2005).
FIGURE 1.3 Aromatic amino acids biosynthesis from shikimic acid and phenyl alanine derivatives of phen-
ylpropanoid pathway. (Adapted from Iriti and Faoro 2009.)
Plant Secondary Metabolites—The Key Drivers of Plant’s Defence Mechanisms 11
and are also called phenylpropanoids (Iriti and Faoro 2009; Hyskova and Ryslava 2019).
‘Phosphoenolpyruvate and erythrose 4-phosphate from the glycolysis and pentose phosphate path-
way are the precursors of phenylpropanoid pathway and which leads to the synthesis of two main
intermediates, shikimic and chorismic acid’ (Weaver and Hermann 1997). ‘In the succeeding steps,
after a branch point, phenylalanine and tyrosine are formed from prephenic and arogenic acid,
whereas tryptophan from anthranilic acid’ (Weaver and Hermann 1997). The phenylalanine further
subjected to deamination reaction catalyzed by PAL (phenylalanine ammonia-lyase), which leads to
the synthesis of cinnamic acid and this forms the key step for the synthesis of phenolic constituents
(Iriti and Faoro 2009).
After a series of hydroxylation reactions of the benzene ring, hydroxycinnamates (e.g. coumaric,
sinapic and ferulic acids) are formed from the cinnamic acid precursor (Iriti and Faoro 2009).
Hydroxycinnamates are reduced to their respective alcohols through aldehyde intermediates and
collectively termed monolignols which are further subjected to dimerization or polymerization to
form lignans and lignin, respectively (Iriti and Faoro 2009). Lignification is a complex reaction in
which the polymerization of lignin units is catalyzed by peroxidases, consuming H2O2 (Hahlbrock
and Scheel 1989; Iriti and Faoro 2004). Benzoic and hydroxybenzoic acids (C6 ─C1) like salicylic
acid are another cinnamic acid derivative group, synthesized by the cleavage of C2 fragment from
the phenylpropane structure (Hahlbrock and Scheel 1989; Iriti and Faoro 2004). However, based on
the species and the conditions (e.g. pathogen attack), salicylic acid can also synthesize directly from
chorismate-isochorismate by isochorismate synthase (Wildermuth et al. 2001). Figure 1.4 explains
FIGURE 1.4 Main steps of the phenylpropanoid pathway leading to benzoic acids, hydroxycinnamates,
monolignols and lignin. (Adapted from Iriti and Faoro 2009.)
12 Biotechnological Approaches to Enhance Plant Secondary Metabolites
the phenylpropanoid pathway’s major steps which lead to the synthesis of benzoic acids, hydroxy-
cinnamates, monolignols and lignin.
secondary metabolites besides its primary metabolites to resist in the changing environment and to
cross-talk between signalling pathways within the plant and with other biological entities (Jacobo-
Velazques et al. 2015; Martin 2017; Rai et al. 2017). These secondary metabolites are reported to
serve humans across various domains from food to pharmaceutical industries around the globe (Dar
et al. 2017a). To harvest these medicinal principles from the medicinal plants, people have exploited
the plant germplasm from the natural habitat at an alarming rate (Maxted et al. 2020). Many of the
medicinal plants are now considered endangered (Sharma and Thokchom 2014). As per the reports,
the contents of these naturally occurring medicinal components were found low in most of the
plants (Verma and Shukla 2015). So, it was needed to enhance the contents of such key principal
components of the plants. Various people around the globe tried to enhance the contents of the sec-
ondary metabolites in the plants using various methods and were reported significant enhancement
of the targeted secondary metabolites in the tested plants (Hussain et al. 2012). The most common
methods employed to augment the contents of the plant secondary metabolites are as follows:
1. Tissue culture approaches: Plant cell and tissue culture technologies using explants like
leaves, roots, stems and meristems are established for the enhanced in vitro production
of secondary plant metabolites as it offers controlled supply of biochemicals independent
of plant availability and bioreactors are the key process for their commercial production
(Sajc et al. 2000; Hussain et al. 2012). Other advantages of this technique over conven-
tional plant cultivation include the production of a metabolite of interest under controlled
environmental conditions, cultured cells could be devoid of contaminations with micro-
organisms and insects, a cell could be easily multiplied to get their specific metabolite,
automated cell growth control and metabolite process regulation can reduce the labour cost
and further, the productivity could be improved and the metabolite of interest is extract-
able from the cultures (Hussain et al. 2012). Taxol, morphine, codeine, L-Dopa, capsaicin
and berberine are some of the potentially active natural metabolites produced in large
quantities using plant cell and tissue culture techniques (Tam et al. 1980; Yoshikawa et al.
1985; Holden et al. 1988; Morimoto et al. 1988; Wichers et al. 1993; Fett-Neto et al. 1994;
Thengane et al. 2003).
2. Abiotic elicitation: The treatment of plant cells with abiotic elicitors is a useful approach
to increase the secondary metabolite production in cell cultures (Karuppusamy 2009).
Abiotic elicitors represent non-biological origin substances and are grouped into physical,
chemical and hormonal factors (Naik and Al-Khayri 2016). Light, osmotic stress, salin-
ity, drought and thermal stress are the physical elicitors (Naik and Al-Khayri 2016). The
metabolite production can be affected by light and the effect of light on the enhanced pro-
duction of two important secondary metabolites—gingerol and zingiberene—in Zingiber
officinale callus culture is reported (Anasori and Asghari 2008). Osmotic stress, an impor-
tant environmental stress, is proven to alter the physiological and biochemical properties
of plants and increase the secondary metabolite concentrations in plants (Zobayed et al.
2007). Polyethylene glycol is an osmotic agent which can induce water stress in many
plants (Van den Berg and Zeng 2006). Exposure to salinity is also known to stimulate
or induce the production of secondary metabolite (Haghighi et al. 2012). Catharanthus
roseus grown under salt stress showed increased levels of vincristine—an important alka-
loid (Misra and Gupta 2006). Drought stress, which can also greatly reduce plant growth,
can increase secondary metabolite content (Naik and Al-Khayri 2016). Heavy metals rep-
resent chemical elicitors and agents for abiotic stress in living organisms (Cai et al. 2013).
Heavy metal-induced changes in the metabolic activity of plants can alter the production
of photosynthetic pigments, nonprotein thiols, proteins and sugars (Naik and Al-Khayri
2016). Plant hormones are also widely used as elicitors and jasmonic acid, salicylic acid
and gibberellins are the most studied hormones in this category (Naik and Al-Khayri
2016). Jasmonic acid induces the production of different plant secondary metabolites,
Plant Secondary Metabolites—The Key Drivers of Plant’s Defence Mechanisms 15
including rosmarinic acid, terpenoids indoles alkaloids and plumbagin in different cell
cultures (Krzyzanowska et al. 2012; Almagro et al. 2014; Silja et al. 2014). Salicylic acid is
another hormonal elicitor that is reported to enhance the production of various secondary
metabolites like tanshinones (Xiaolong et al. 2015), withanolide A, withanone and witha-
ferin A (Sivanandhan et al. 2013), stilbene (Xu et al. 2015), vincristine and vinblastine
(Idrees et al. 2010). Another phytohormone gibberellin is also known as an elicitor for
secondary metabolite production (Liang et al. 2013).
3. Biotic elicitation: Biotic elicitors represent the substances of biological origin and they
contain polysaccharides of plant cell walls (e.g. pectin, chitin, cellulose and chitosan) and
microorganisms (Naik and Al-Khayri 2016). The treatment of chitosan in Plumbago rosea
cultures enhanced plumbagin content (Komaraiah et al. 2003) whereas chitosan or chitin
application induced the synthesis of fluoroquinolone and coumarins in shoot cultures of
Ruta graveolens (Orlita et al. 2008). Microorganisms also play a role as biotic elicitors
by inducing plant defence response and by triggering the pathways to alter the secondary
metabolite production (Naik and Al-Khayri 2016). Researchers use yeast extract for years
as one of the important biotic elicitors to stimulate the production of various metabo-
lites like ethylene in tomato and tanshinone in Perovskia abrotanoides root culture (Felix
et al. 1991; Arehzoo et al. 2015; Naik and Al-Khayri 2016). The effectiveness of fungal
preparations (pathogenic and nonpathogenic) as elicitors is one of the most effective biotic
strategies to stimulate a plant’s phenylpropanoid and flavonoid biosynthetic pathways
(Dixon et al. 2002; Lattanzio et al. 2006; Naik and Al-Khayri 2016). The production of
indole alkaloids serpentine, ajmalicine and catharanthine has increased up to five times in
C. roseus cell suspensions and raucaffrincine in Rauwolfia canescens using fungal cell
wall fragments (Parchmann et al. 1997; Zhao et al. 2001; Namdeo et al. 2002). Likewise,
fungal mycelia increased the diosgenin content in Dioscorea deltoidea by 72% (Rokem
et al. 1984). Furthermore, bacterial elicitors induce scopolamine biosynthesis in Scopolia
parviflora adventitious hairy root cultures (Jung et al. 2003). Likewise, a significant
increase in the glycyrrhizic acid content was observed in Agrobacterium rhizogenes,
Bacillus aminovorans and Bacillus cereus challenged cultures (Awad et al. 2014). The
secondary metabolite production enhancement in hydroponic cultures using biotic elicitors
was also reported (Vu et al. 2006). Datura innoxia Mill., were cultivated in hydroponic
conditions in which nutrient solution was inoculated with Agrobacterium rhizogenes and
found that there is an increased production of alkaloid content in the plant roots growing
in hydroponic culture (Vu et al. 2006).
4. Hairy root culture: The hairy root system based on inoculation with Agrobacterium rhizo-
genes is another method for the production of secondary metabolites synthesized in plant
roots (Palazon et al. 1997; Karuppusamy 2009).
5. Production of transgenic lines: Genetic manipulation became a promising alternative
for biotechnological exploitation of plant cells and hence the engineered plants will give
an increased enzyme activity and enhanced production of the respective metabolite
(Karuppusamy 2009; Hussain et al. 2012).
6. Biosynthetic metabolic pathway engineering: Metabolic pathway engineering is another
approach for increased secondary metabolite production through the targeted and pur-
poseful alteration of metabolic pathways (Lessard 1996). Metabolic engineering can offer
different strategies to enhance the productivity of the desired metabolite by increasing
the number of producing cells, through over expression of genes, by enhancing the rate-
limiting enzymes or blocking the feedback inhibition mechanism and competitive path-
ways (Hussain et al. 2012).
7. Targeted gene editing using CRISPR CAS9: CRISPR-Cas9-based genome editing sys-
tems are now flashed to the future efforts in the elucidation and engineering of biosyn-
thetic pathways of novel natural products (Nielsen et al. 2017). The CRISPR/Cas9 system
16 Biotechnological Approaches to Enhance Plant Secondary Metabolites
exhibits vast applications with high precision and accuracy compared to other genome
editing tools. Hence, it can probably be used as a common technique for plant metabolic
engineering in the future (Alagoz et al. 2016). The effectiveness of CRISPR-Cas9 genome
editing technology in the manipulation of bioactive alkaloid biosynthetic pathways in
Papaver somniferum L. has been successfully demonstrated (Alagoz et al. 2016).
8. RNAi technology: RNA interference technology (RNAi) possesses the main impact on the
manipulation of secondary metabolites which represents three major groups viz. terpe-
noids, alkaloids and phenylpropanoids (Wagner and Kroumova 2008). RNAi might prove
to be effective for the production of novel natural products from plants, which in turn
can give novel and rapid applications (Borgio 2009). Researchers used RNAi technology
to yield unnatural plant natural products from lengthy and complex metabolic pathways
(Borgio 2009). Runguphan et al. (2009) explained the elimination of monoterpene indole
alkaloids (derived from two starting compounds, tryptamine and secologanin) produc-
tion in C. roseus hairy root culture through RNA mediated suppression of tryptamine
biosynthesis. In this study, they have introduced an unnatural tryptamine analogue to the
production media and established that the silenced C. roseus culture could produce novel
alkaloids derived from this unnatural starting substrate. This provided an advantage that
the novel natural product synthesized this way is not contaminated due to the presence of
normal natural alkaloids present in C. roseus.
9. Induced mutation (gamma radiation), nuclear radiations and mutation breeding are the
other method of enhancement of secondary metabolite production. The effect of gamma
radiation on the formation of biomass and the yield of pharmacologically important second-
ary metabolites in Hypericum triquetrifolium Turra callus cultures induced from different
seedling parts has been demonstrated (Azeeza et al. 2017). Photo-elicitation of bioactive
secondary metabolites using ultraviolet radiation has also been studied (Matsuura et al.
2013). The role of mutation breeding in the alteration of secondary metabolite production
has also been investigated (Kolakar et al. 2018). In periwinkle ‘Dhawal’, a high alkaloid
producing variety has been developed by chemical mutagen treatment of seeds followed by
rigorous selection in widely cultivated variety ‘Nirmal’ (Kulkarni and Baskaran 2003). An
increase in sapogenin (diosgenin) level in Trigonella corniculata following chemical muta-
genesis using dimethyl and diethyl sulphate has also been reported (Kolakar et al. 2018).
These new approaches will help to explore the plants as a potential source of many more phytochem-
icals. Continuation and much deeper efforts in this area will hopefully direct to the improved bio-
technological production of specific, high-value and yet underexplored plant metabolites (Hussain
et al. 2012).
1.4 CONCLUSION
This chapter has dealt with plant secondary metabolites, their synthesis, classification, biological
function, medicinal applications and an overview of the recent advancements for the enhanced
production of novel secondary metabolites in plants. There is a huge range of secondary metabo-
lites present in the plant kingdom, with a very varied distribution. Secondary metabolites are not
required directly for the growth and development of plants but they are necessary for the survival
of plants in adverse conditions. They protect plants from biotic and abiotic stress conditions through
the chemical defence mechanisms. The capability of plants to defend and survive is thus ultimately
because of the ecological functions of their secondary metabolites. Such metabolites are studied
and clinically proven for their ethnopharmacological potential also and which will aid to human
health. However, many of such secondary metabolites are still under-explored and unidentified for
their potential and thus the research area of natural products still requires much more attention and
thorough study. Further, because of the increased commercial significance of high-value secondary
Plant Secondary Metabolites—The Key Drivers of Plant’s Defence Mechanisms 17
metabolites in recent years, there is a great inducement for researchers to focus much on secondary
metabolism, especially in the option of their enhanced production by means of different approaches.
The common approaches mainly include tissue culture approaches, biotic and abiotic elicitation, meta-
bolic engineering, targeted gene editing, RNAi technology, production of transgenic lines, induced
mutation, nuclear radiations and mutation breeding. In future, the aforementioned biotechnological
approaches might be approached as an alternative production method to overcome the less acces-
sibility of biologically potential, commercially important and medicinally valuable plant secondary
metabolites. Advances in bio techniques, especially methods for culturing plant cell cultures, might
give new angles for the commercial processing of even rare medicinal plants and their novel chemicals.
ACKNOWLEDGEMENTS
Dr. D. Sruthi acknowledges the Department of Health Research (DHR), Government of India, New
Delhi, for her award of Young Scientist-HRD scheme (YSS/2019/000035/PRCYSS). Dr. D. Sruthi
is also grateful to Science and Engineering Research Board (SERB), Department of Science and
Technology, Government of India, New Delhi, for her award of National post-doctoral Fellowship
(PDF/2017/000339). Acknowledgement is further extended to Dr. T. John Zachariah, Former Principal
Scientist, and Acting Director, ICAR-Indian Institute of Spices Research, Kozhikode, Kerala, for his
valuable guidance on plant secondary metabolites during the doctoral period of Dr. D. Sruthi.
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Now let us
resume our walk.
The Strand is very
little altered, you
think. Already Exeter
Change is gone;
Exeter Hall is already
built; the shops are
less splendid, and
plate glass is as yet
unknown; in Holywell
Street I can show
you one or two of
the old signs still on
the house walls;
EXETER CHANGE Butcher Row, behind
St. Clement Danes, is
pulled down and the street widened; on the north side there is
standing a nest of rookeries and mean streets, where you will have
your Law Courts; here is Temple Bar, which you will miss; close to
Temple Bar is the little fish shop which once belonged to Mr.
Crockford, the proprietor of the famous club; the street messengers
standing about in their white aprons will be gone in your time; for
that matter, so will the aprons; at present every other man in the
street wears an apron. It is a badge of his rank and station; the
apron marks the mechanic or the serving-man; some wear white
aprons and some wear leather aprons; I am afraid you will miss the
apron.
Fleet Street is much more picturesque than the Strand, is it not?
Even in your day, Eighty-seven, when so many old houses will have
perished, Fleet Street will still be the most picturesque street in all
London. The true time to visit it is at four o’clock on a summer
morning, when the sun has just risen on the sleeping city. Look at
the gables of it, the projecting stories of it, the old timber work of it,
the glory and the beauty
of it. As you see Fleet
Street, so Dr. Johnson
saw it.
There is a good deal
more crowd and
animation in Fleet Street
than in the Strand. That
is because we are nearer
the City, of course; the
traffic is greater; the
noise is much greater. As
for this ring before us, let
us avoid it. A coachman
fighting a ticket-porter is
a daily spectacle in this
thoroughfare; those who
crowd round often get
bloody noses for their
pains, and still more
THE PARISH ENGINE
often come away without
(From a Drawing by George Cruikshank in ‘Sketches by Boz’)
their purses. Look! The
pickpockets are at their
work almost openly. They have caught one. Well, my friend, our long
silk purses—yours will be square leather things—are very easily
stolen. I do not think it will repay you for the loss of yours to see a
poor devil of a pickpocket pumped upon.
You are looking again at the plain windows with the small square
panes. The shops make no display as yet, you see. First, it would not
be safe to put valuable articles in windows protected by nothing but
a little thin pane of glass—which reminds me that in the matter of
street safety you will be a good deal ahead of us; next, an honest
English tradesman loves to keep his best out of sight. The streets
are horribly noisy. That is quite true. You have heard of the roar of
the mighty city. Your London, Eighty-seven, will not know how to
IN FLEET STREET—PROCLAIMING THE QUEEN.
roar. But you can now understand what its roaring used to be. An
intolerable stir and uproar, is it not? But then your ears are not, like
ours, used to it. First, the road is not macadamised, or asphalted, or
paved with wood. Next, the traffic of wagons, carts, and
wheelbarrows, and hand-carts, is vastly greater than you had ever
previously imagined; then there is a great deal more of porter work
done in the street, and the men are perpetually jostling, quarrelling,
and fighting; the coaches, those of the short stages with two horses,
and the long stages with four, are always blowing their horns and
cracking their whips. Look at yonder great wagon. It has come all
the way from Scotland. It is piled thirty feet high with packages of all
kinds: baskets hang behind, filled with all kinds of things. In front
there sit a couple of Scotch lasses who have braved a three weeks’
journey from Edinburgh in order to save the expense of the coach.
Brave girls! But such a wagon with such a load does not go along
the street in silence. It is not in silence either that the women who
carry baskets full of fish on their
heads go along the street, nor is
the man silent who goes with a
pack-donkey loaded on either
side with small coal; and the
wooden sledge on which is the
cask of beer, dragged along by a
single horse, makes by itself as
much noise as all your carriages
together, Eighty-seven.
And there is nothing, you
observe, for the protection and
convenience of passengers who
wish to cross the road. Nothing
at all. No policeman stands in
the middle of the road to
regulate the traffic; the drivers
pay no heed to the foot CROCKFORD’S FISH SHOP
passengers; at the corner of (From a Drawing by F. W. Fairholt)
it.
No
t
tak
ea
pin
t
of
po
rt?
Ma
n CHARLES DICKENS
ali
ve! we can take two
Leigh Hunt. bottles, and never turn a
-LEIGH HUNT-
hair.
CHAPTER V.