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Mirjana Pavlovic
Bioengineering
A Conceptual Approach
Bioengineering
Mirjana Pavlovic
Bioengineering
A Conceptual Approach
Mirjana Pavlovic
Department of Computer and Electrical Engineering
Florida Atlantic University
Boca Raton, FL, USA
This book is product of love and enthusiasm for the rapidly growing field of science
which involves integration of different disciplines, something that I have sensed as
a need at a very early stage of my road less travelled. In trying to develop the par-
ticular subjects/topics/courses at Florida Atlantic University (FAU) within a bioen-
gineering group I have established significant and friendly relationships with a lot
of people which I owe gratitude for this book design, and publication, and hope-
fully, its life in the future. Those are Dr. Zvi Roth, who has initiated the program and
stood by me when it was the most difficult, Drs. Nurgun Erdol and Borko Furht,
Chairmen and big fans of modernization and development of integrated programs,
Dr. Maria Larrondo Petrie, with her encouraging, supportive, and warm friendship,
Dr. Hanqi Zhuang who always believed in me, and most of my colleagues from
Department of Computer Science and Electrical Engineering, at FAU. My graduate
and DIS students and their passion for bioengineering, their work and research that
they have done with me or other mentors, were also strong, supportive, inspiring,
and driving forces during this long journey toward the light. Quite unexpectedly, a
young man with infinite patience and talents, undergraduate DIS/research student,
John Mayfield, was capable of following my thoughts and ideas giving his tremen-
dous input in illustrating this fascinating field: a combination of nature and human
work. He used some existing visualizations as models and guides for each of his
visual elaborations. And finally, all of my friends and family members, especially
my extremely constructively helpful brother, deserve to be mentioned within this
list for encouraging me to get into this adventure. I do hope it will show up useful
to those who the book is purposely written for.
John Mayfield
ix
Abstract
The book reflects the critical principles and basic concepts in bioengineering. It
integrates the biological, physical, and chemical laws and principles enlightening
bioengineering as emerging, novel, complex approach with deep roots in the funda-
mental science. It is a concise review on the critical topics in this field including
both: biological/medical and engineering aspects to it. It should be kept in mind yet,
that the book is not bioengineering itself, but rather the introduction to this subject,
with essential purpose to introduce those who do not have necessary background, to
fundamental biological and physiological principles, that are significantly impli-
cated in bioengineering. Therefore, the physical/chemical properties of cells, the
natural design and function of tissues and organs, along with the main principles of
molecules of life existence, composition, conformation, and interplay within differ-
ent physiological scenarios are described and explained. They are used as the funda-
ment for complex cellular and tissues/organs physiological functions such as
function of heart, neuronal, skeletal muscle, and other cells and tissues: lungs, over-
all circulation, liver, gastrointestinal tract, and kidneys. The emerging concepts of
nanotechnology, drug delivery, biomaterials, scaffolds, biomagnetism, and regen-
erative/cellular therapy are outlined, emphasized, and their status of development
and progress is evaluated. Molecular aspects of life communication and molecular
aspects of bioengineering as a fundamental approach in this field are interrelated
and therefore compared in order to give an insight into fundamental, structural
dimension of this approach and its brilliant natural or scientific solutions. The lead-
ing breakthrough personalities and events are mentioned where appropriate, and
their impact on scientific development of this field, emphasized. The author has
combined her own laboratory experience and data with those of others in order to
give the book, both: monograph and scientific-book character. The book is written
by Dr. Mirjana Pavlovic, M.D., Ph.D., who is teaching these subjects/courses for
engineers and science students, and is highly recommended as a helpful tool along
with any textbook.
xi
Preface
xiii
xiv Preface
approach in viewing a system on its smallest possible scale which naturally leads
toward tools such as functional genomics. Engineering approaches, using classical
design perspectives, are constructionist, building new devices, approaches, and
technologies from component concepts. Biological engineering utilizes both kinds
of methods in concert, relying on reductionist approaches to identify, understand,
and organize the fundamental units which are then integrated to generate something
new. In addition, because it is an engineering discipline, biological engineering is
fundamentally concerned with not just the basic science, but the practical applica-
tion of the scientific knowledge to solve real-world problems in a cost-effective way.
Although engineered biological systems have been used to manipulate informa-
tion, construct materials, process chemicals, produce energy, provide food, and help
maintain or enhance human health and our environment, our ability to quickly and
reliably engineer biological systems that behave as expected is at present less well
developed than our mastery over mechanical and electrical systems [1].
The differentiation between biological engineering and overlap with biomedical
engineering can be unclear, as many universities now use the terms “bioengineer-
ing” and “biomedical engineering” interchangeably. However, according to Prof.
Doug Laufenberg of MIT, biological engineering (like biotechnology) has a broader
base which applies engineering principles to an enormous range of size and com-
plexities of systems ranging from the molecular level—molecular biology, bio-
chemistry, microbiology, pharmacology, protein chemistry, cytology, immunology,
neurobiology, and neuroscience (often but not always using biological substances)—
to cellular and tissue-based methods (including devices and sensors), whole macro-
scopic organisms (plants, animals), and up increasing length scales to whole
ecosystems. Neither biological engineering nor biomedical engineering is wholly
contained within the other, as there are non-biological products for medical needs
and biological products for nonmedical needs [2].
ABET, the US-based accreditation board for engineering B.S. programs, makes
a distinction between biomedical engineering and biological engineering; however,
the differences are quite small. Biomedical engineers must have life science courses
that include human physiology and have experience in performing measurements on
living systems while biological engineers must have life science courses (which
may or may not include physiology) and experience in making measurements not
specifically on living systems. Foundational engineering courses are often the same,
and include thermodynamics, fluid and mechanical dynamics, kinetics, electronics,
and materials properties.
They are fundamentally interrelated, since stem cells are known to be the building
blocks of entire organism, the “blank chips” with great potential to Trans-
differentiate into different tissues, and so regenerate, repopulate, and recruit new
cells in order to heal the process caused by the initial tissue damage [3]. Here we are
Preface xv
in the tissue engineering area, the subarea of biomedical engineering, where stem
cell application is still debatable in some respect, but the results of which are also
encouraging. The great breakthrough is the discovery and use of adult stem cells,
which can be found and taken out of the human body and used either for classical
transplantation or tissue reparation when necessary. There is a considerable advance
in Computer Aided Tissue Engineering (CATE), where the dimensions of tissue
damage can be determined, and tissue samples designed by the use of stem cells and
scaffolds (the supportive structures made from biocompatible biomaterial), which
are enabling stem cells to differentiate and grow in accordance with original tissue
architecture, leading toward complete and perfect reparation. It is also strengthen by
ink-jet printing system, where the stem cell patterns are layered by dispensing them
through notorious ink-jet cartridge [3]. Stem cells have the capability of self-
renewal, expansion under hypoxic conditions, and multipotency-capacity to differ-
entiate into many directions dependent on the conditions. There are even trials with
cells of an old organ which behave like stem cells when introduced into damaged
one. Stem cell researchers explain that those cells already know their environment
and are well instructed; in fact they memorize how to arrange and to what extent to
grow. This approach is developed by Dr. Anthony Atala and known as “transplanta-
tion without a donor.” A great success of stem cell application is especially noticed
in the disease known as osteogenesis imperfecta, where the bones in children are
extremely fragile, and when applied in early stage of child development they can
dramatically improve their future life. I am personally collaborating with two groups
from Europe, and they have very good results with application of autologous adult
stem cells in acute myocardial infarction and other ischemic diseases.
They are really numerous, and I think that each is equally important since either
bioengineering or biomedical engineering has so many subdisciplines which are
interrelated and it is difficult to make strict distinctions. In fact, the heart of these
two disciplines is integrative thinking and as such, involves the ideas for the solu-
tions that are coming from life scientists and engineers at the same time. The first
such “crossing over” happened between Alexander Fleming, who has discovered
Penicillin but did not have the possibility to expand its production, and Howard
Florey, who was a pharmacologist (chemical engineer) and who invented technol-
ogy for Penicillin production using Fleming’s frozen samples [2]. Today, for exam-
ple, for a good Rational Vaccine Design (RVD) you need the interaction of
bioinformatician and immunologist in order to do it well. The first one will do the
data mining and necessary mathematical transformations in order to find the best
possible candidate for the vaccine, while another will lead the bioinformatician
through the field of immunology known as vaccination and finally check it experi-
mentally in the wet-lab. So, the hypothesis is tested and either confirmed or rejected.
Yes, it is OK to specialize in only one of these areas if you understand that the
teamwork is the essential request for successful bioengineering solution.
xvi Preface
Biological engineers or bioengineers are engineers who use the principles of biol-
ogy and the tools of engineering to create usable, tangible, economically viable
products. Biological engineering employs knowledge and expertise from a number
of pure and applied sciences, such as mass and heat transfer, kinetics, biocatalysts,
biomechanics, bioinformatics, separation and purification processes, bioreactor
design, surface science, fluid mechanics, thermodynamics, and polymer science. It
is used in the design of medical devices, diagnostic equipment, biocompatible mate-
rials, renewable bioenergy, ecological engineering, and other areas that improve the
living standards of societies. In general, biological engineers attempt to either
mimic biological systems to create products or modify and control biological sys-
tems so that they can replace, augment, or sustain chemical and mechanical pro-
cesses. Bioengineers can apply their expertise to other applications of engineering
and biotechnology, including genetic modification of plants and microorganisms,
bioprocess engineering, and biocatalysis.
Because other engineering disciplines also address living organisms (e.g., pros-
thetics in mechanical engineering), the term biological engineering can be applied
more broadly to include agricultural engineering and biotechnology. In fact, many
old agricultural engineering departments in universities over the world have
rebranded themselves as agricultural and biological engineering or agricultural
and biosystems engineering. Biological engineering is also called bioengineering
by some colleges and biomedical engineering is called bioengineering by others,
and is a rapidly developing field with fluid categorization. The main fields of bioen-
gineering, and therefore, the typical jobs that they can find may be categorized as:
• Bioprocess Engineering: Bioprocess Design, Biocatalysis, Bioseparation,
Bioinformatics, Bioenergy.
• Genetic Engineering: Synthetic Biology, Horizontal Gene Transfer.
• Cellular Engineering: Cell Engineering, Tissue Culture Engineering, Metabolic
Engineering.
• Biomedical Engineering: Biomedical Technology, Biomedical Diagnostics,
Biomedical Therapy, Biomechanics, Biomaterials.
• Biomimetics: The use of knowledge gained from evolved living systems to solve
difficult design problems in artificial systems.
This is developing field in a rapid expansion, so the market is open to fresh gradu-
ates, either at universities, hospitals, or industries. The typical salaries are: $45,000–
$55,000 and within a year can reach even $60,000.
Preface xvii
One of the greatest is growing organs from patient’s own tissue. A very good exam-
ple of that is the bladder. Clinical trial is going on to collect the data. Great “hit” is
drug delivery through particular vectors, the surface of which has the molecules that
bind to specific receptors on damaged tissues. In that way, drug delivery is targeted
toward only damaged tissue (cancer, inflammation, etc.) and the medication affects
only sick cells without touching normal ones. This enables precise dosage and indi-
vidual targeted therapy. The bioinstrumentation has brought up also incredible solu-
tions such as eradication of cancer cells by using golden nanoparticles in combination
with laser technique. Gene therapy has raised the hope in treatment of hemophilia.
Almost unbelievable, but true, the mouse eye is developed to the certain point in one
experimental trial. The development of mouse micro-brain is one of the greatest
challenges in the development of this field.
Since the very first use of stem cells in bioengineering, they have been used with
hope that they can have anti-ageing and life-improvement effect. Is the longevity the
ultimate goal? For those who really live in that hope I think that, as a human race
with defined life we cannot live much longer than we do. But as long as we leave,
we should have a good quality of life. And that for sure, will be better, and therefore
also, somewhat longer. So, let us say that it is the ultimate goal and in my vision that
is on its way to be achieved. It does not mean, of course, that stem cells are the
answer to every question. Their use has also its disadvantages and limitations
dependent on the scenario in question.
In my experience, at least here, at FAU I have found that students with good under-
standing of basic sciences (math, chemistry, and physics) even without any biologi-
cal experience can “conquer” biological knowledge to that extent that they feel very
comfortable in becoming independent in their work. Especially if they are scientifi-
cally oriented and therefore, very resourceful, they can surprise you pleasantly with
problem solving and creativity skills. Both are important for bioengineering and
their own growth. My students were amazingly interested in what they were doing
and therefore their knowledge was/is exceptionally solid.
xviii Preface
I would say: nanotechnology, rational vaccine design, gene therapy, stem cell appli-
cation, bioinstrumentation, etc.
It is really hard to say. I do believe that it goes in parallel, since both directions are
challenging and necessary to be developed, and as long as we as humans are differ-
ent, so there will be those who are interested in one and those who have an interest in
another direction. In that sense, both directions will be and I think they are, devel-
oped with great enthusiasm and intellectual investment. An especially important
application is the analysis and cost-effective solution of problems related to human
health, but the field is much more general than that. For example, biomimetics is a
branch of biological engineering which strives to understand how living organisms,
as a result of the prolonged trial-and-error processes known as evolution, have solved
difficult problems in the past, and to find ways to use this knowledge to solve similar
problems in artificial systems [4]. On the other hand, systems biology seeks to utilize
the engineer’s familiarity with complex artificial systems, and perhaps the concepts
used in “reverse engineering,” to facilitate the difficult process of recognition of the
structure, function, and precise method of operation of complex biological systems
[1, 4, 5, and 6].
References
1. Saltzman MW: Biomedical Engineering. (2009), Cambridge University Press, New York. 2009.
ISBN: 978-0-521-840099-6 (hardback)
2. Pavlovic M (Ed), Balint B: Stem cells and Tissue engineering, Springer New York (2013).
ISBN:978-1-4614-5505-9 (eBook)
3. Berger SA, Goldsmith W, Lewis ER. (Eds): Introduction to Bioengineering (1996), Oxford
University Press, Oxford New York. ISBN:0-19-856516 (Hbk)
4. Vunjak-Novakovic G, Scadden DT: Biomimetic platforms for human stem cell research. (2011)
Cell Stem Cell, 8:252–261.
5. Hall GE, Guyton AC, Textbook of Medical Physiology. (2011) Philadelphia, PA, Sounders
Elesevier, ISBN:978-1-4160-4574-8
6. Pavlovic M, Balint B: Stem Cells and Tissue Engineering. (2013) Springer Briefs in Electrical
and Computer Engineering, Springer NY, ISBN 978-1-4614-5504-2, pp. i–xii, 1–153
Contents
xix
xx Contents
4 Genomics.................................................................................................. 37
Genomics: What Was Behind Human Genome Project? .......................... 37
Emphasizing Bioengineering Aspects to Genomics ................................. 40
Molecular Cloning (DNA) ........................................................................ 42
PCR: Sequence of Events ......................................................................... 44
The Cycling Reactions .......................................................................... 44
References ................................................................................................. 47
5 Proteomics: Enzyme: Structure, Function, Kinetics,
and Engineering Aspects ........................................................................ 49
Proteins: Synthesis, Structure and Function ............................................. 49
How Are the Proteins Made in the Cell? .............................................. 50
Enzymes: Structure, Function and Kinetics of the Reactions ............... 50
Emphasizing Bioengineering Aspects to Proteins and Enzymes .............. 53
References ................................................................................................. 54
6 Communication I: Neural System and Regulation
of Communication................................................................................... 57
The Nernst Potential ................................................................................. 61
Neurotransmitter Signaling ....................................................................... 63
Emphasizing Bioengineering Aspects to Nervous System ....................... 63
References ................................................................................................. 66
7 Communication II (Endocrine Control) ............................................... 67
Communication II: Signal Transduction Pathways
and Endocrine Regulation of Communication .......................................... 67
Chemical Structures of the Three Major Classes
of Human Hormones ................................................................................. 71
Feedback Mechanism for Regulation of Hormone Secretions ............. 76
Emphasizing Bioengineering Aspects to Endocrine Control.................... 76
Some of Bioengineering Solutions Applied
in Hormonal Regulation ........................................................................ 77
References ................................................................................................. 78
8 Communication III (Immunological Control)...................................... 81
Communication III: Immune System and Regulation
of Communication .................................................................................... 82
The Adaptive Immune System: Signaling Mechanism......................... 82
T-Cell Receptor Signaling ..................................................................... 82
Cytokine Signaling................................................................................ 84
Emphasizing Bioengineering Aspect to Immunological
Control and Communication: Engineering Vaccines
and Rational Vaccine Design (RVD) ........................................................ 84
Rational Vaccine Design ........................................................................... 86
Roadblocks Toward RVD...................................................................... 86
The Adaptive Immune System .............................................................. 87
The Humoral Arm of Immunity............................................................ 87
Antibodies ............................................................................................. 88
Contents xxi
B Lymphocytes ..................................................................................... 88
The Cell Mediated Arm of Immunity ................................................... 89
Antigen Presenting Cells....................................................................... 89
The Major Histocompatibility Complex ............................................... 90
Cytotoxic T Cells .................................................................................. 90
Helper T Cells ....................................................................................... 91
Example from Author’s Collaborative Work: RVD for Ebola Virus ........ 91
References ................................................................................................. 93
9 Stem Cells in Regenerative Therapy ..................................................... 95
Organogenesis from Adult Stem Cells and Problems
with Different Tissues ............................................................................... 101
Therapeutic Implications for TCSCs as a New Concept .......................... 102
The Concept of VSEL............................................................................... 103
The Concept of Mesenchymal Stem-Cell
(with Dental Pulp Cells as an Example) ................................................... 106
Mobilization as a New Non-invasive Therapeutic Concept ...................... 109
Emphasizing Bioengineering Aspects to Stem Cell Engineering ............. 110
New Concepts in Adult Stem Cell Research with Development
of New Strategies: Personal Experience in the Light
of Significance of Growing Information ............................................... 110
Directions and Relevant Studies: We and Others...................................... 111
Reprogramming as a Therapeutic Event ............................................... 113
References ................................................................................................. 116
10 Concept of Drug Delivery ....................................................................... 121
Introduction ............................................................................................... 121
Development of Nano-Biotechnologies .................................................... 122
Challenges ................................................................................................. 124
Technologies ............................................................................................. 125
Genetically Engineered Cells for Controlled Drug Delivery .................... 128
Sustained Release Technology .................................................................. 128
Emphasizing Bioengineering Aspects to Drug Delivery:
Achieving Precision .................................................................................. 129
References ................................................................................................. 131
11 Engineering Balances.............................................................................. 133
Engineering Systems................................................................................. 134
Open Systems............................................................................................ 136
Closed Systems ......................................................................................... 138
Closed Systems and Organizational Theories........................................... 138
Closed Systems and Change ..................................................................... 139
Homeostasis .............................................................................................. 139
Mass Balances........................................................................................... 141
Steady State............................................................................................... 141
Equilibrium and Dynamic Equilibrium .................................................... 141
References ................................................................................................. 142
xxii Contents
This book will help you with terminology and meaning of the terms, since it will
facilitate development of a vocabulary after every chapter that you can very effi-
ciently use to either fortify your knowledge or confirm and memorize it. But, do not
only memorize. Always think about the questions beyond the scope and try to find
solutions or look for them. Nobody knows answers to all questions—neither me. It
is in human nature—to be limited and reach the individual plateau in final personal
evolution. We are all different and our plateau levels are different. However, fear
not, thrust yourself and go on! Go on with the questions. You will make a great
move if you ask an intriguing question; you have a chance to change the world with
answer. Fundamentally, maybe. And maybe that will be the question that you will
want to answer within your research work. Don’t be shy to ask for that possibility,
since you might lose it if you don’t. Do always what you really wish and like, since
otherwise you will end up doing what somebody else want and you might not nei-
ther want nor like it. Try to avoid that personal catastrophe, since you live in the
country of great opportunities.
We know that understanding of the life is tightly linked to the understanding of
its cellular and molecular structures and their function, as well as genetic code in
each species. The essential breakthroughs in development of biology are done by
Charles Darwin and Gregor Mendel in nineteenth century. Darwin has proposed his
theory of evolution through natural selection and species adaptation as an
underlying mechanism for survival, while Mendel proposed the concept of
inheritance based on chromosomal interplay during cell division with
mathematical precision. Both have open the door for further consideration of
chromosomal structure which with time escalated into DNA discovery and
confirmation of its structure and determining its function in inheritance.
Introduction: Cell Compartmentalization 3
Today, we know that people live longer than they did in the past. Overall life
expectancy has increased from 50 to almost 80 (1900–2000).
1). The growth and expansion of biomedical engineering is a critical factor in this
extension of life and improvement of health. So, what is the essence of terrestrial
life? If you look into the most active organelle in living cells (animal and plant):
mitochondria and chloroplast you will conclude that it is exchange of the matter
(CO2 produced by animal cells and O2 produced by plant cells) and energy-light or
ATP molecule (cell energy currency) synthesized in the cell.
In order to reach efficient solutions to the problems linked to life, biologist and
bioengineer must work together. They do that through many projects in which biol-
ogy, medical, physics; chemistry and mathematical knowledge are integrated.
Although still difficult to define, bioengineering is revolutionary touching biological
sciences in terms of focusing research toward very specific and precise outcomes
[1–3]. Bioengineering captures a spectrum of different disciplines which all together
function harmonically when needed to comfort the requirements (Biomolecular
engineering, Biochemical engineering, Biotechnology, Nanotechnology,
Biomaterials, Biomechanics, Bioinstrumentation, etc.). By definition, bioengineer-
ing is engineering that is applied to Life science, while biomedical engineering is
focused specifically to human health [1]. Yet, the borderlines are not so strict due to
one important thing: they are mostly based on cell structure and function, or physi-
ology. Therefore, the basic knowledge of the cell is necessary whether you want to
study one or another (Fig. 1.1).
The life starts with the cell. It is either unicellular organism per se, or the physi-
ological unit of multicellular organism [3–10]. It is an open system, border-lined
with membrane [5]. The exchange of matter and energy is taking place through. Cell
function is based upon existence of cellular organelles (compartmentalized part of
the cell). It starts with nucleus as the biggest and significant from reproductive (life
maintaining) point of view, and after that many others including: cilia, flagella and
microfilaments as the smallest ones. Cell membrane is the semipermeable mem-
brane with proteins immersed into phospholipid’s bilayer. It communicates through
pores (mechanical, passive transport) and/or ion channels and different carriers, and
receptors integral proteins (active transport). Non-compartmentalized part of the
cell, in which the organelle are immersed, is called cytosol or cytoplasm.
4 1 Cell Content and Basic Construction
Fig. 1.1 The principle of the balance of the life: communication between plants and animals
• The skills of engineer and life scientist are complementary. To convert the prem-
ises of molecular biology into new processes to make new products requires the
INTEGRATION of these skills.
• And this INTEGRATION is the ultimate goal of bioengineering, by which the
gap between two fields will be bridged.
References
1. Saltzman, M.W.: Biomedical Engineering. Cambridge University Press, New York (2009).
ISBN 978-0-521-840099-6
2. Pavlovic, M., Balint, B.: Stem Cells and Tissue Engineering. Springer Briefs in Electrical and
Computer Engineering. Springer, New York (2013), pp. i–xii, 1–153. ISBN 978-1-4614-5504-2
3. Berger, S.A., Goldsmith, W., Lewis, E.R. (eds.): Introduction to Bioengineering. Oxford
University Press, Oxford (1996). ISBN 0-19-856516
4. Johnson, A.T.: Biology for Engineers, 1st edn. Taylor & Francis, London (2011). ISBN
0-19-856516
5. Andjus, R.K.: General physiology and biophysics. Modules 1–7. Center for Multidisciplinary
Studies. University of Belgrade, Belgrade, Serbia (2002)
6. Domach, M.M.: Introduction to Biomedical Engineering. Prentice Hall, Upper Saddle River
(2009). ISBN 10: 0-13-602003-8
7. Palsson, B.P., Bhatia, S.N.: Tissue Engineering. Prentice Hall, Englewood Cliffs (2003). ISBN
0130416967
8. Bronzino, J.D. (ed.): The Biomedical Engineering Handbook, vol. 1 & II, 2nd edn. CRC, Boca
Raton (2000). ISBN 0-8493-0461-X
9. Rashidi, H.H., Buehler, L.: Bioinformatics Basics. Applications in Biological Science and
Medicine. CRC, Boca Raton (2000). ISBN 0-8493-2375-4
10. Jones, N.C., Pevzner, P.A.: An Introduction to Bioinformatics Algorithms. Massachusetts
Institute of Technology, Cambridge (2004). ISBN 0-262-10106-8
Chapter 2
The Advanced Architecture of the Cell
Learn from yesterday, live for today, hope for tomorrow. The
important thing is to not stop questioning.
Albert Einstein (1879–1955)
This chapter will introduce you with the detailed cell construction: elements,
molecules, forces and bonds between them, macromolecules and their functions in
the cells as well as movable, working molecules that are maintaining cell ener-
getic level, being capable of performing specific functions. This entire book is
giving you the overall picture of organ-tissue functions starting from the skin
(integumentary system) that wraps the body as the organ which is separating the
body toward external environment as well as the internal organs the functions of
which are interrelated. In order to understand it, it is necessary to understand
how the nature has designed the construction of the cell, or what does cellular
architecture look like?
The structure of the cell gives definitely the chemical context to life, since cell is
water–based solution with elements, molecules, and macromolecules dissolved
within it. This immediately answers the question why bioengineer should have to
understand chemistry, since if he wants to solve the problem by improving some
function in the living system; he has to understand chemical laws and processes.
This aspect of integral thinking is involved in designing new molecules for treating
diseases, such as:
• Liposomes/Doxorubicin and other drug delivery systems
• Non-viral gene therapy
• Plaques removal from Alzheimer’s disease (AD)
• Creating artificial devices
• Nuclear Magnetic Resonance (NMR) spectra, of important biomolecules, etc.
Examples of applied chemistry in bioengineering are numerous, and they are
growing in number every day, especially polymers, for drug delivery systems as we
shall see later on.
A matter consists of chemical elements either in pure form or in combination
called compounds [1]. Compound is bigger and heavier than element. Therefore,
chemistry is fundamental to understanding the life, since life is built up of the mat-
ter. What is the matter that makes life so specific? There are about 25 chemical ele-
ments essential to life among 92 known as naturally occurring [1]. They are
organized in Periodic Chart of elements and designated by symbols or letters.
Biologically, the most important are carbon, oxygen, hydrogen, and nitrogen from
which about 96 % of living matter is built up. There are other biologically impor-
tant elements such as (Ca, P, K, S, Na, Cl, and Mg) that make up remaining 4 % of
an organism’s weight. So called trace elements also need to be present in very low
The Advanced Architecture of the Cell 9
concentrations but are of vital importance (Br, Cr, Co, Cu, F, I, Fe, Mn, Mo, Se, Si,
Sn, V, and Zn). Elements can compose the compounds in a fixed ratio, and with dif-
ferent properties than the elements alone have (Nalco is different than either Na or
Cal). Dependent on the types of bonds and the size of molecules, the compounds
can be micro (water and salt bonds-inorganic matter) and/or macromolecules (C–C
or CONH bonds-organic matter) [2].
The behavior of the element is determined by the structure of the atoms that are
building the element. The atom is the smallest possible unit of matter that retains the
physical and chemical properties of its element. Atoms are tiny particles, not visible
by naked eyes. Atoms of the same element share similar chemical properties. Atoms
are made up of subatomic particles, the three of which—the most stable are: neu-
trons (no charge, neutral), protons (positive charge), and electrons (negative charge).
If an atom is electrically neutral, the number of protons equals the number of elec-
trons, which yields an electrostatically balanced charge. They are further divided in
smaller particles known as subatomic, or elementary particles. Today we know that
hundreds of elementary particles have been discovered (neutrino, mesons, moons,
positrons).
These elementary particles are made up of extremely small particles called
quarks. But the quarks, even so small, have their own organization. According to
Gel Man’s system of symmetry, there are quarks and antiquarks, matter and anti-
matter (of the opposite charge). There are 4 different kinds of quarks which
are = 2/3,–1/3,–1/3, = 2/3 that of the electron charge. The quarks combine to make
different elementary particles. Each meson, for example, can be conceived as the
union of quark and antiquark. Knowing these entities is necessary for example for
development of nanotechnology-nanoparticles that can improve some function in
the body or be of diagnostic or curative importance.
In atom, e.g. element, number of protons is constant while the number of neu-
trons can vary. All atoms of an element have the same atomic number (number of
protons in an atom of particular element). In a neutral atom the number of protons
is equal to number of electrons. The number of protons and neutrons in an atom is
known as mass number. The mass of proton and the mass of neutron are both about
1. The atom of an element which has the same atomic number but different mass
number is called isotope (same number of protons but different of neutrons). Some
isotopes are radioactive. These are instable, with the spontaneously decaying
nucleus, emitting subatomic particles and/or energy as radioactivity. The use of
isotopes in biomedical sciences is of great importance for radioactive labeling of
substances in many assay designs, determination of the age of fossils, etc. [1].
Electrons are also important from many aspects, especially valence electrons
(electrons in the outermost energy shell-valence shell since they tend to fill incom-
plete valence shells by interacting with other atoms. This is the reason for creating
chemical bonds—attractions that hold atoms together. Examples of bonds are: cova-
lent, ionic, metallic, hydrogen, and van der Waals.
10 2 The Advanced Architecture of the Cell
The bonds between atoms hold a molecule together. But what causes bonding? Two
atoms form a bond only if their interaction is energetically favorable, that is, if
energy—heat, for example—is released when the bond is formed. Conversely,
breaking that bond requires the input of the same amount of energy.
The two main causes of the energy release associated with bonding are based on
Coulomb’s law of electric charge:
1. Opposite charges attract each other (electrons are attracted to protons).
2. Like charges repel each other (electrons spread out in space).
Each atom consists of a nucleus, containing electrically neutral particles, or neu-
trons, and positively charged protons (Fig. 2.1). Surrounding the nucleus are nega-
tively charged electrons, equal in number to the protons so that the net charge is
zero. As two atoms approach each other, the positively charged nucleus of the first
atom attracts the electrons of the second atom; similarly, the nucleus of the second
atom attracts the electrons of the first atom. As a result, the nuclei are held together
by the electrons located between them.
This sort of bonding is described by Coulomb’s law: Opposite charges attract
each other with a force inversely proportional to the square of the distance between
the centers of the charges.
( + ) charge · ( - ) charge
Attracting force = constant ·
distance 2
This attractive force causes energy to be released as the neutral atoms are brought
together. This energy is called the bond strength.
When the atoms reach a certain closeness, no more energy is released. The dis-
tance between the two nuclei at this point is called the bond length (Fig. 2.1).
Bringing the atoms closer together than this distance results in a sharp increase in
energy. Why? As stated above, just as opposite charges attract, like charges repel.
The Atom
_
_ Neutron
Proton _
_
+
++ + + + _
+ +
_
+ +
_
_
If the atoms are too close, the electron–electron and nuclear–nuclear repulsions
become stronger than the attractive forces. When the nuclei are the appropriate bond
length apart, the electrons are spread out around both nuclei, and attractive and
repulsive forces balance for maximum bonding. The energy content of the two-atom
system is then at a minimum, the most stable situation (Fig. 2.2).
Covalent bonds are chemical bonds between the atoms formed by sharing a pair
of valence electrons (Fig. 2.3). They are strong and good example is H2. In the mol-
ecule, the nuclei are shielded from each other by the two electrons. In the molecule
there is an electrostatically stable configuration for the 2 negatively and 2 posi-
tively charged particles (the electrons and the protons).
An alternative to this type of bonding results from the complete transfer of an
electron from one atom to the other. The result is 2 charged ions: 1 positively
charged, a cation, and 1 negatively charged an anion (Fig. 2.4). Again, the bonding
is based on coulombic attraction, this time between two ions (Fig. 2.4).
The coulombic bonding models of attracting and repelling charges shown in
Figs. 2.4 and 2.5 are highly simplified views of the interactions that take place in the
bonding of atoms. Nevertheless, even these simple models explain many of the
properties of organic molecules.
Ionic bond formed between ions (positive-cations and negative anions) by the
electrostatic attraction after a complete transfer of an electron from the donor atom
to an acceptor (change of transfer). These bonds are strong in crystals but fragile in
the water. Ionic compounds are called SALTS (Fig. 2.5).
The molecular polarity is determined by the position of polar and non-polar
covalent bonds. Strength of these bonds is given in the table (expressed as energy
(GA). The strongest is covalent and the weakest van der Waals forces.
Bonding of the atoms within a molecule (H–H) where the line represents a pair
of shared electrons is known as structural formula. Formula which indicates the
number and type of atoms, but does not reveals the structure is known as molecular
formula. Molecules are building up of two or more atoms held together by covalent
bonds. Compounds are the substances composed of two or more elements com-
bined in a fixed ratio and can have covalent or ionic bonds.
12 2 The Advanced Architecture of the Cell
H H + H H H H H
H atom
H2 molecule, covalent bond
electron stablized
by one nucleus
1s atomic orbital each electron
stabilized by two nuclei
+ + + + +
Repulsion
Fig. 2.3 Covalent bonding. Attractive (solid-line) and repulsive (dashed-line) forces in the bond-
ing between two atoms. The large spheres represent areas in space in which the electrons are found
around the nucleus. The small circled plus sign denotes the nucleus
e transfer
e− e− e−
+ + + + +
e−
Fig. 2.4 Ionic bonding. An alternative mode of bonding results from the complete transfer of
an electron from atom 1 to atom 2, thereby generating two ions whose opposite charges attract
each other
+ 2D Crystalline
Na Cl Na Cl−
Orientation
Cl−
Cl−
Na+
3D Crystalline 3D Crystalline
Cl− Latice
Latice
Na+
−
Cl
5 kcal/mol−1
R δ− −
δ+ δ R
O H O
δ+
H
alcohol
two oxygen atoms bonded
over hydrogen atom
Water
hexamer
Methanol
tetramer
ACID ANION
BASE CATION
Fig. 2.7 Solutions: protic and aprotic. For the protic ionic liquids, a dynamic equilibrium exists
between the ionic and dissociated forms: [BH] + X-(l) B (l) + HX (l) B (g) + HX (g)
Metallic bond: Metallic bonding is the type of bonding found in metallic elements.
This is the electrostatic force of attraction between positively charged ions and delo-
calized outer electrons.
Hydrogen bond: formed by the charge attraction when a hydrogen atom covalently
bonded to one electronegative atom is attracted to another electronegative atom.
There is no orbital overlap as it is in covalent bond, so its strength is about ten time
weaker than that of covalent or ionic bonds (Figs. 2.6 and 2.7).
However, they are very important in fixing properties such as:
• Solubility,
• Melting points
• Boiling points
in determining the form and stability of crystal structures. Therefore, they play a
crucial role in biological systems.
14 2 The Advanced Architecture of the Cell
These are weak interactions that occur between atoms and molecules that are very
close together and result from charge asymmetry in electron clouds [3]. These
forces are responsible for the condensation of the gases into liquids, and the freez-
ing of liquids into solid. Functional groups determine the type and strength of these
interactions. There are several types of intermolecular interactions. Thus, ionic
compounds contain oppositely charged particles held together by extremely strong
electrostatic interactions. These ionic interactions are much stronger than the inter-
molecular forces present between covalent molecules (Fig. 2.8).
But, even though CH4 has no net dipole, at any one instant its electron density
may not be completely symmetrical, resulting in a temporary dipole. This can
induce a temporary dipole in another molecule. The weak interaction of these tem-
porary dipoles constitutes van der Waals forces (Fig. 2.9).
All compounds exhibit van der Waals forces. The surface area of a molecule
determines the strength of the van der Waals interactions between molecules. The
larger the surface area, the larger the attractive force between two molecules, and
the stronger the intermolecular forces (Fig. 2.10).
Fig. 2.11 Weaker and stronger forces of attraction affected by polarizability between smaller
(fluorine) and larger atoms (iodine)
Fig. 2.12 The different stabilizing interactions in secondary and tertiary protein structure
Cell activities as well as body activities require expenditure of energy. Human gains
energy trough the food that they eat. This energy is stored or expended to sustain
life. All of the chemical reactions in our body result in utilization or accumulation
of the energy [4]. It is important to separate the possibility of reaction occurring
from the rate at which the reaction will proceed. These concepts are related, but
distinct. The role of enzymes (proteins which are specialized to serve as biocatal-
izators, to speed up the chemical reactions in the cells), is essential.
The energy currency of the cells is ATP, organic compound which occurs as an
intermedier in metabolism and thanks to three phosphorus groups the last of which
has the weakest covalent bond, can be hydrolyzed to ADP and Pi releasing energy
needed for cellular processes. Energy is always released from chemical bonds and
required for their formation. From thermodynamic point of view, the overall heat of
formation (enthalpy) is a measure of the order, the amount of energy that is either
consumed or released when for example the water is formed, and is called ΔHf
(25 °C and 1 atm) = ΔH of formation. Heats of formation can be used to calculate
the enthalpy changes of other reactions. Negative indicates exothermic (released E)
and positive-(consumed E) endothermic reaction. The entropy of the system is the
measure of disorder in the system or the amount of energy in the system that cannot
Coulomb Forces: A Simplified View of Bonding 17
be used to work. For any change in the state of the system, a change in entropy or
ΔH can be calculated.
Gibbs free energy (G) is related to both entropy (S) and enthalpy (H). It is actu-
ally a measure of the potential energy of the system, which is a function of enthalpy
and entropy.
DG = DH - TDS
Fig. 2.13 (a, b) Proton-motive force of the respiratory chain and essential events on the inner
mitochondrial membrane during its formation
18 2 The Advanced Architecture of the Cell
éA- ù
pH = pK a + log ë û
[ HA ]
• Lawrence Joseph Henderson (1878–1942) was a talented biochemist, among
many other titles, who spent most of his career at Harvard. He was responsible
for developing the components of the equation after studying equilibrium reac-
tions that took place within blood as a result of respiration (specializing in
“fatigue”). His equation was incomplete without a solid calculations going into it.
• Karl Albert Hasselbalch (1874–1962) was a chemist who studied pH closely. He
also studied blood and reactions that took place with oxygen, to put in the sim-
plest of terms. He eventually modified Henderson’s equation by putting mathe-
matical logs into it creating a solid relationship. The Henderson-Hasselbalch
equation can be used to prepare buffer solutions and to estimate charges on ioniz-
able species in solution, such as amino acid side chains in proteins. Caution must
be exercised in using this equation because pH is sensitive to changes in tem-
perature and salt concentration in the solution being prepared.
Dissociation constant: the equilibrium constant for the decomposition of a com-
plex ion into its components in solution. The smaller the value of K, the lesser the
dissociation of the species in solution. This value varies with temperature, ionic
strength, and the nature of the solvent.
Buffers
1. Buffer solutions consist of either: a weak acid and salt of its conjugate base (e.g.
HF and NaF) or: a weak base and the salt of its conjugate acid (e.g. NH3 and
NH4Cl). Buffer solutions are resistant to pH change despite small additions of
acid or base. Buffer systems are very important in living systems (e.g. constant
blood pH is vital).
2. When H+ is added to a buffered solution, it reacts completely with the weak base
present:
H+ + A− HA or H+ + B HB+
H+ + F− HF or H+ + NH3 NH4+
3. When OH– is added to a buffered solution, it reacts completely with the weak
acid present:
HO + H A H2O + A or HO + H B H2O + B
4. Steps (2) and (3) are stoichiometry problems: In step (2), H+ is completely
consumed, leaving excess A– (or B). In step (3), OH– is completely consumed,
leaving excess HA (or BH+). You must determine which species remain and how
much of each remains in solution. Once [A–] and [HA] are calculated, the pH of
solution can be calculated from the Henderson-Hasselbalch equation:
éA- ù
pH = pK a + log ë û
[ HA ]
5. The pH of a buffered solution will be determined by the ratio [A–]/ [HA], (or [B]/
[BH+]). As long as this ratio remains constant, the pH remains constant. This will
be case if [HA] and [A–], (or [B] and [BH+]) are large relative to [H+] and
[OH–]. Optimum buffering occurs when [A–] = [HA]. In this case, the ratio [A–]/
[HA] is most resistant to pH change when H+ or OH– is added.
éA- ù éA- ù
pH = pK a + log ë û If éë A - ùû = [ HA ] then ë û = 1 and pH = pK a
[ HA ] [ HA ]
The pKa of the weak acid selected for the buffer should be as close as possible to
the desired pH.
Macromolecules of Life
Those are the key classes of molecules that are constructed to LINKING small mol-
ecules. These are mostly members of a more general class of chemicals called poly-
mers which are large molecules formed by bonding of many smaller chemicals,
called monomers, into one long molecule. Because of their large size they are called
macromolecules [5].
1. Nucleotides
The monomer of nucleic acid polymers is called a nucleotide. They are com-
posed of pentose, inorganic phosphate and organic base. Dependent on pentose
(ribose or deoxyribose) and composition of the bases, they will make DNA
(deoxyribose) or RNA (ribose and Uracil instead of Tymine).
2. Nucleotide basis (Cytosine, Guanine, Thymine, and Uracil)
3. Nucleic acids (DNA and RNA)
DNA is double-stranded in a form of double-helix; the process of two single
strands of DNA assembling into double-stranded DNA is called hybridization.
Not every pair of DNA strands can form a double helix. Hybridization can only
occur if the two strands have complementary sequence. Complementary strands
are “mirror images”: each strand contains the same information (although the
strands are not identical) but they are mirror images prepared in special way.
20 2 The Advanced Architecture of the Cell
First, the complementarity strand is pointed into different direction: if one strand
is arranged phosphate to pentose, phosphate to pentose facing upward, then the
complementary strand is perfectly predictable. The basis on the complementary
strand match a particular pattern: A goes with T, C goes with G, G does with C,
and T goes with A. These matches—often called base pairings—are determined
by hydrogen bonding interactions between the nucleotides. It is the hydrogen
bonding of complementary base-pair matching that holds the two DNA strands
together in a stable double helix.
4. Proteins and how they are made?
Proteins are produced by chemical reactions that are directed by DNA. One of
the main functions of DNA in our cells is to provide the information blueprint
for synthesis of the proteins that our cell will need. They are synthesized accord-
ing to central dogma of molecular biology defined by Watson and Crick:
replication, translation, transcription: the language of the bases sequence in DNA
during replication is transcribed by mRNA and translated into the amino-acid
sequence of the protein synthesized on ribosomes in the cytosol. During transla-
tion, the information on mRNA is translated, through series of reactions, into a
linear sequence of amino acids that will become a protein. They can be constitu-
tive proteins of the cell, carriers, messengers, enzymes, antibodies, enzymes.
5. Carbohydrates:
Major source in human diet. According to size: monosaccharides (ribose and
deoxyribose) disaccharides (sucrose) and polysaccharides (starch and cellulose).
(CH2O)n, where n is the number of carbon atoms in the molecule, although there
are the exceptions to this rule.
6. Lipids are not polymers, but fairly large molecules built from a combination of
other simple units.
Triglycerides, phospholipids, and steroids: hydrophobic, hydrophilic, and
amphyphillic.
7. Natural and Synthetic Polymers
Large molecules composed of multiple identical or similar units (monomers)
linked by covalent bonds. DNA and RNA are natural polymers of nucleotides.
Polypeptide is natural linear organic polymer consisted of a large number of
amino acid residues bonded together through peptide (CONH) bond into a chain.
Polysaccharide is a biological macromolecule composed of monosaccharide
subunits. Polymerization is the chemical process of making of a polymer from
a collection of monomers. Polyvinylchloride is synthetic organic polymer used
in biomedical purposes.
The German scientists used an X-ray beam to scan the internal nanostructure of the
cells, but only blasted them for 0.05 s at a time to avoid damaging the living cells
too quickly [6]. Their method produced images so clear that nanometer-scale
Emphasizing Bioengineering Aspects to Advanced Architecture of the Cell 21
a b
(6R)DDATHF Aminopterin Tetrahydrofolate
Cell Line
(pmol/h/mg prot.)
CCRF-
750 1280 595
CEM
CCRF-
352 447 276
CEM R16
Fig. 2.14 (a) Fluorescent labeling of COX enzyme activity (green) during macrophage phagocy-
tosis of Bacillus Chalmette Gerene (author’s unpublished data). (b) Activity of enzyme FPGS for
different folate and antifolate substrates expressed as pmol/h/mg of protein-published [7]
structures are visible. The researchers studied living and chemically fixed cells
using the ‘nan diffraction technique’ and when they compared the images of the
cells, the new X-rays prove that the chemical fixing process makes big changes to
tiny 30–50 nm structures in the cell [6]. While the scientists have not speculated on
what the new technique could mean for medical and scientific research, it will make
it possible for experts to study living cells at high resolution and understand a living
cell’ inner mechanics better.
A very new bioengineering aspect emerges from that quite new level, which can
detect living molecules in their natural location and movement.
The author’s work on detection of enzyme activity at fluorescence level and bio-
chemical level are presented in Figs. 2.14a, b [7]. On the other hand, the author’s
experience in “wondering throughout the cell” and looking for pH changes in trans-
planted neural tumor (glioma) under the skin of rat in trying to reach pH changes that
will increase tumor’s radiosensitivity, measured, monitored and detected using NMR,
are presented with result published in British Journal of Cancer in 1996 [8] (Fig. 2.15).
22 2 The Advanced Architecture of the Cell
References
1. Brown, L., Holme, T.: Chemistry for Engineering Students. Mary Finch, Books/Cole, Cengage
Learning, Belmont (2011). ISBN 13:078-1-4390-4791-0
2. Johnson, A.T.: Biology for Engineers, 1st edn. Taylor & Francis, London (2011). ISBN 13:
978-1420077636
3. Andjus, R.K.: General Physiology and Biophysics. Modules 1–7. Center for Multidisciplinary
Studies, University of Belgrade, Belgrade (2002). ISBN 86-80109-11-8
4. Hall, G.E., Guyton, A.C.: Textbook of Medical Physiology. Sounders Elesevier, Philadelphia
(2011). ISBN 978-1-4160-4574-8
5. Shuler, M.L., Karg, F.: Bioprocess Engineering Basic Concepts, 2nd edn. Prentice Hall, PTR,
Upper Saddle River (2002). ISBN 0-13-081908-5
6. http://www.dailymail.co.uk/sciencetech/article-2570300/The-X-ray-living-cell-Breakthrough-
lets-scientists-study-cancer-minute-detail. html#ixzz2upd14slJ
7. Pavlovic, M., Leffer, J., Russello, O., Bunni, M.A., Beardsley, G.P., Priest, D.G., Pizzorno, G.:
Altered transport of folic acid and antifolates through the carrier mediated reduced folate trans-
port system in a human leukemia cell line resistant to (6R) 5,10-Dideazatetrahydrofolic acid
(DDATHF). In: Chemistry and Biology of Pteridines and Folates. Advances in experimental
medicine and biology, vol. 338, pp. 775–778. Springer, New York (1993)
8. Pavlovic, M., Wroblewski, K., Manevich, Y., Kim, S., Biaglow, J.E.: The importance of choice
of anaesthetics in studying radiation effects in the 9L rat glioma. Br J Cancer 74(Suppl. XXVII),
S222–S225 (1996)
Chapter 3
Cell Physiology: Liaison Between Structure
and Function
Cell is the basic functional unit in the body. There are about 200 different (specialized)
types of cells in human body, although each is genetically the same. Yet, they are
different in size, shape and function due to the fact that not all the genes and not the
same set of genes are functional or being used in each particular cell type (gene
selectivity). Despite this diversity of cell composition and function, most cells in the
body have the same structural organization. There are between 50 and 200 trillion
of cells in the body of an average person (estimated) and they are constantly being
dividing, metabolizing, working, dying and being replaced by integrated mecha-
nisms. Therefore, structure, morphology, and function are tightly coupled in the cell
giving to each specific cellular entity unique and distinguishable features.
Physiology is defined as the science that treats of the functions of the living organism
and its parts, and of the physical and chemical factors and processes involved [1–5].
With respect to that. There are two essential, distinguishable groups of cells that
appear either as unicellular or multicellular organisms.
In prokaryotic cells (typically small, about 1 μ or more), which lack the mem-
brane separated nucleus (but not DNA content needed for replication), cytoskeleton
and cytoplasmic organelles, there is a rigid cell wall, maintaining their shape [3, 4].
In bacteria, peptidoglycan, a polysaccharide that cross links and add to cell stability
is present in the wall. Gram-positive bacteria have predominantly a peptidoglycan
wall, while Gram-negative bacteria have two walls: a thinner, inner wall, containing
peptidoglycan and an outer lipopolysaccharide layer. Despite small size these
organisms are biochemically diverse, with a rapid doubling time. Biomedical engi-
neers often use them for production of recombinant proteins.
Eukaryotic cells (fungi, algae, protozoa, plants and animals) are typically larger,
about 10 μ and more; have a more complex structure with the plasma membrane
consisting of lipid bilayer, separating the intracellular from extracellular space.
Although with a membrane boundary, this is still an open system since it communi-
cates with external world either through pores or different forms of active and pas-
sive transport of molecules and ions [4–7] (Fig. 3.1).
Plant cells have walls to give them structure. Animal cell membrane has elastic
and fluid properties. Around the cell is extracellular matrix (ECM), produced by
cells, which holds them together and allows them to form tissues [3, 7, 8]. Specialized
structural molecules are secreted locally by cells and assembled to form a scaffold
that supports cell attachment, spreading, proliferation, migration, and differentia-
tion. Cells influence the chemistry of their surrounding ECM by direct secretion of
molecules, but they also modify the physical characteristics of the matrix locally by
releasing of the enzymes, which can digest or stabilize the gel matrix, or by applica-
tion of physical forces, can physically rearrange the gel components [6–12]. The
composition and organization of macromolecules of the ECM helps determine the
tissue structure and physical properties (examples: the soft cartilage in nose and ear,
the basal lamina sheet underlying epithelial cells (and secreted by epithelial cells)
in the intestine, and tendons, which attach muscles to the bone. Bone contains a
mineral-rich ECM. Proteoglycan, collagen and elastin are the special structural
molecules of ECM, while special adhesives are: fibronectin and laminin [3, 11].
Collagen provides strength, while elastin provides elasticity. Fibronectin serves as a
cross-linker between collagen and GAGs, while laminin also contains binding sites
for cell attachment and promotion of neurite growth [11, 12].
Cell membrane and basic functions: Cell membrane is a semipermeable, lipid
bilayer with proteins immersed into it having very different functions [3, 4]. This
plasma membrane restricts the movement of the water into and out of the cell. The
plasma membrane is described as a fluid mosaic (“model of fluid mosaic”) com-
posed of lipids, carbohydrates, and proteins. In lipid bilayer, amphyphylic phospho-
lipids are arranged with their hydrophobic tails pointing toward the interior of the
membrane and their hydrophilic heads exposed to adjacent water phases, serve as
the main elements of the membrane.
Biomedical engineers have also used lipids to construct devices (for instance:
lyposomes—as drug carriers).
Transport across the cell membrane might capture quite a few mechanisms [3, 5]:
• Diffusion is the spontaneous movement of particles from an area of high concen-
tration to the area of low concentration.
• Passive transport (diffusion): is the process by which water and small uncharged
molecules, such as oxygen (O2) and carbon dioxide (CO2) pass through the
plasma membrane.
• Active transport (facilitated diffusion): process of moving a molecule from an
area of low concentration on one side of the membrane to the area of high con-
centration on the other (against the concentration gradient).
• Osmosis: The diffusion of water through semi-permeable membrane. It is a
physical process in which a solvent moves, without input of energy, across a
semi-permeable membrane (permeable to the solvent).
• Solvent: A solvent is a liquid, solid, or gas that dissolves another solid, liquid, or
gaseous solute, resulting in a more complex solution [2]. The most common
solvent in everyday life is water. Most other commonly-used solvents are organic
chemicals. These are called organic solvents, but not the solute, separating two
solutions of different concentrations.
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Intrinsic Value of a Horse.
Although it is a common axiom that "the value of a thing is exactly
what it will fetch," yet in the hunting field the price at which a horse
has been sold is very rarely a criterion of his real worth, the reason
being that his performances are made up of three items, of which he
himself forms only one, the other two being stable management and
good riding, for neither of which is the quadruped entitled to claim
the smallest amount of credit; and yet, on the principle that
"handsome is that handsome does," it is a usual error, especially
among young sportsmen, to estimate that a horse which goes
brilliantly must be a good one, and vice versâ; whereas an ordinary
description of animal, in splendid condition, and judiciously ridden,
cannot fail to leave far behind him a superior one injudiciously
ridden, made up of flesh instead of muscle, of impure instead of
pure blood, and of bloated, unpractised, instead of healthy, well-
exercised lungs. For these reasons it continually happens that a
horse that has been observed to go what is called "brilliantly"
throughout a run, is, at its conclusion, sold for a considerable sum,
in addition to another horse, on which the purchaser, in a few
weeks, leaves behind him the animal he had sold, whose owner now
to his cost discovers that
"The lovely toy so keenly sought
Has lost its charms by being caught"
by him.
But the price of a hunter is materially affected by the quality as well
as the qualifications of his rider, whose position in the world often
confers upon his horses a fictitious value; and accordingly the
hunting stud of the late Sir Richard Sutton—sold by public auction
shortly after his death—realised sums exceeding by at least 40 per
cent. what subsequently proved to be their current value when
transferred to the stables of people of less renown.
Again, a respectable, first-rate horse dealer succeeds in his
profession, not so much by his superior knowledge of the animals he
buys, but by the quantity and quality of the eloquence he exerts in
selling them. Every hunter, therefore, that is purchased from a great
man of this description is necessarily composed of, 1st, his intrinsic
value; and 2nd, of the anecdotes, smiles, compliments, and praises,
which, although when duly mixed up with an evident carelessness
about selling him, captivated the listener to purchase him, like a
bottle of uncorked ardent spirits evaporate, or, like a swarm of bees,
fly away, almost as soon as the transaction is concluded, leaving
behind them nothing but the animal's intrinsic value.
On Shying.
It often happens that a horse brimfull of qualifications of the very
best description is most reluctantly sold by his master "because he
shies so dreadfully," a frolic which, to a good rider, is perfectly
harmless, and which, if he deems it worth the trouble, he is almost
certain to cure.
A timid horseman, however, not only believes that his horse is
frightened at the little heap of stones at which he shies, but for this
very reason he becomes frightened at it himself; whereas the truth
is that the animal's sensations in passing it are usually compounded
as follows:—
Of fear of {the little heap 1/10.
{whip and spur 9/10.
Now, if this be the case, which no one of experience will deny, it is
evident that the simple remedy to be adopted is, first, at once to
remove the great cause of the evil complained of, by ceasing to
apply either whip or spur; and, secondly, gradually to remove the
lesser cause by a little patient management which shall briefly be
explained.
When a horse has been overloaded with a heavy charge of oats and
beans, which may be termed jumping powder, and primed by a very
short allowance of work, his spirits, like the hair trigger of a rifle, are
prepared on the smallest touch to cause a very violent explosion. In
fact, without metaphor, on the slightest occurrence he is not only
ready, but exceedingly desirous, to jump for joy.
The casus belli which the animal would perhaps most enjoy would
be to meet a temperance run-away awning-covered waggon full of
stout, healthy young women in hysterics, all screaming; or to have a
house fall down just as he was passing it. However, as a great
conqueror, if he cannot discover a large excuse for invading the
territory of his neighbour, is sure to pick out a very little one, so does
the high mettled horse who has nothing to start at, proceed under
his rider with his eyes searching in all directions for something which
he may pretend to be afraid of. Influenced by these explosive
propensities he cocks his ears at a large leaf which the air had gently
roused from its sleep, as if it were a crouching tiger; and shortly
afterwards a fore leg drops under him as suddenly as if it had been
carried away by a cannon shot, because in the hedge beside him a
wren has just hopped from one twig to another nearly an inch.
Now, of course, the effective cure for all these symptoms of
exuberant, pent up spirits is a long, steady hand-gallop up and down
hill across rather deep ground. Before, however, this opportunity
offers, man can offer to the brute beneath him a more reasonable
remedy.
The instant that a horse at a walk sees at a short distance before
him, say a heap of stones, at which he pretends to be or really is
afraid, instead of forcing him on, he should be allowed or, if it be
necessary, forced to stop, not only till he has ceased to fear it, but
until, dead tired of looking at it, he averts his eyes elsewhere.
While advancing towards it, so often as his fear, or pretended fear,
breaks out, by instantly bringing him to a stand-still it should in like
manner be over-appeased.
In slowly passing any object which a horse appears to be afraid of,
the error which is almost invariably committed is to turn his head
towards it, in which case, revolving upon his bit as on a pivot, the
animal turns his hind-quarters from it, and in that position with great
ease shies more or less away from it; whereas, if the rein opposite
to it be pulled firmly, he not only instantly ascertains that his rider's
desire is in opposition to, instead of in favour of forcing him towards
the object of his fear, but when his head is drawn away from it,
although he is able to rush forwards, it is out of his power to shy
laterally.
Now, instead of endeavouring thus to triumph over instinct by
reason, instead of allowing a horse more time even than he requires
to appease his own apprehensions, be they real or pretended, the
course which a gentleman's groom usually adopts is, like giving fuel
to fire, to add to the animal's fear of the object he is unwilling to
approach, his infinitely greater fear of a pair of plated spurs.
The oftener and the stronger this ignorant prescription is applied,
the more violent becomes the disease it undertakes to alleviate,
until, on its being declared to be incurable, the poor frightened
animal is sold for a fault almost entirely created by human hands
and inhuman heels.
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