CHAPTER 10 PHOTOSYNTHESIS

Section A: Photosynthesis in Nature

1. Plants and other autotrophs are the producers of the biosphere
2. Chloroplasts are the site of photosynthesis in plants

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Introduction
• Life on Earth is solar powered.
• The chloroplasts of plants use a process called
photosynthesis to capture light energy from the sun
and convert it to chemical energy stored in sugars
and other organic molecules.

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1. Plants and other autotrophs are the
producers of the biosphere
• Photosynthesis nourishes almost all of the living
world directly or indirectly.
• All organisms require organic compounds for energy and
for carbon skeletons.
• Autotrophs produce their organic molecules from
CO2 and other inorganic raw materials obtained from
the environment.
• Autotrophs are the ultimate sources of organic compounds
for all nonautotrophic organisms.
• Autotrophs are the producers of the biosphere.
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• Autotrophs can be separated by the source of
energy that drives their metabolism.
• Photoautotrophs use light as the energy source.
• Photosynthesis occurs in plants, algae, some other
protists, and some prokaryotes.
• Chemoautotrophs harvest energy from oxidizing
inorganic substances,
including sulfur and
ammonia.
• Chemoautotrophy is
unique to bacteria.

Fig. 9.1
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• Heterotrophs live on organic compounds
produced by other organisms.
• These organisms are the consumers of the biosphere.
• The most obvious type of heterotrophs feed on plants
and other animals.
• Other heterotrophs decompose and feed on dead
organisms and on organic litter, like feces and fallen
leaves.
• Almost all heterotrophs are completely dependent on
photoautotrophs for food and for oxygen, a byproduct
of photosynthesis.

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2. Chloroplasts are the sites of
photosynthesis in plants
• Any green part of a plant has chloroplasts.
• However, the leaves are the major site of
photosynthesis for most plants.
• There are about half a million chloroplasts per square
millimeter of leaf surface.
• The color of a leaf comes from chlorophyll, the
green pigment in the chloroplasts.
• Chlorophyll plays an important role in the absorption of
light energy during photosynthesis.

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• Chloroplasts are found mainly in mesophyll cells
forming the tissues in the interior of the leaf.
• O2 exits and CO2 enters the leaf through
microscopic pores, stomata, in the leaf.
• Veins deliver water
from the roots and
carry off sugar from
mesophyll cells to
other plant areas.

Fig. 10.2

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• A typical mesophyll cell has 30-40 chloroplasts, each
about 2-4 microns by 4-7 microns long.
• Each chloroplast has two membranes around a
central aqueous space, the stroma.
• In the stroma are
membranous sacs,
the thylakoids.
• These have an internal
aqueous space, the
thylakoid lumen or
thylakoid space.
• Thylakoids may be stacked
into columns called grana. Fig. 10.2
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 CHAPTER 10 PHOTOSYNTHESIS

Section A1: The Pathways of Photosynthesis

1. Evidence that chloroplasts split water molecules enabled researchers to
track atoms through photosynthesis
2. The light reaction and the Calvin cycle cooperate in converting light energy
to the chemical energy of food: an overview
3. The light reactions convert solar energy to the chemical energy of ATP and
NADPH: a closer look

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1. Evidence that chloroplasts split water
molecules enabled researchers to track
atoms through photosynthesis
• Powered by light, the green parts of plants produce
organic compounds and O2 from CO2 and H2O.
• Using glucose as our target product, the equation
describing the net process of photosynthesis is:
• 6CO2 + 6H2O + light energy -> C6H12O6 + 6O2
• In reality, photosynthesis adds one CO2 at a time:
• CO2 + H2O + light energy -> CH2O + O2
• CH2O represents the general formula for a sugar.
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• One of the first clues to the mechanism of
photosynthesis came from the discovery that the
O2 given off by plants comes from H2O, not CO2.
• Before the 1930s, the prevailing hypothesis was that
photosynthesis occurred in two steps:
• Step 1: CO2 -> C + O2 and Step 2: C + H2O -> CH2O
• C.B. van Niel challenged this hypothesis.
• In the bacteria that he was studying, hydrogen sulfide
(H2S), not water, is used in photosynthesis.
• They produce yellow globules of sulfur as a waste.
• Van Niel proposed this reaction:
• CO2 + 2H2S -> CH2O + H2O + 2S
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• He generalized this idea and applied it to plants,
proposing this reaction for their photosynthesis.
• CO2 + 2H2O -> CH2O + H2O + O2
• Other scientists confirmed van Niel’s hypothesis.
• They used 18O, a heavy isotope, as a tracer.
• They could label either CO2 or H2O.
• They found that the 18O label only appeared if water
was the source of the tracer.
• Essentially, hydrogen extracted from water is
incorporated into sugar and the oxygen released to
the atmosphere (where it will be used in
respiration).
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• Photosynthesis is a redox reaction.
• It reverses the direction of electron flow in respiration.
• Water is split and electrons transferred with H+
from water to CO2, reducing it to sugar.
• Polar covalent bonds (unequal sharing) are converted to
nonpolar covalent bonds (equal sharing).
• Light boosts the potential energy of electrons as they
move from water to sugar.

Fig. 10.3
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2. The light reactions and the Calvin cycle
cooperate in converting light energy to
chemical energy of food: an overview
• Photosynthesis is two processes, each with multiple
stages.
• The light reactions convert solar energy to chemical
energy.
• The Calvin cycle incorporates CO2 from the
atmosphere into an organic molecule and uses energy
from the light reaction to reduce the new carbon
piece to sugar.
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• In the light reaction light energy absorbed by
chlorophyll in the thylakoids drives the transfer of
electrons and hydrogen from water to NADP+
(nicotinamide adenine dinucleotide phosphate),
forming NADPH.
• NADPH, an electron acceptor, provides energized
electrons, reducing power, to the Calvin cycle.
• The light reaction also generates ATP by
photophosphorylation for the Calvin cycle.

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 Fig. 10.4

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• The Calvin cycle is named for Melvin Calvin who,
with his colleagues, worked out many of its steps
in the 1940s.
• It begins with the incorporation of CO2 into an
organic molecule via carbon fixation.
• This new piece of carbon backbone is reduced with
electrons provided by NADPH.
• ATP from the light reaction also powers parts of
the Calvin cycle.
• While the light reactions occur at the thylakoids,
the Calvin cycle occurs in the stroma.
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3. The light reactions convert solar energy
to the chemical energy of ATP and NADPH:
a closer look
• The thylakoids convert light energy into the
chemical energy of ATP and NADPH.
• Light, like other form of electromagnetic energy,
travels in rhythmic waves.
• The distance between crests of electromagnetic
waves is called the wavelength.
• Wavelengths of electromagnetic radiation range from less
than a nanometer (gamma rays) to over a kilometer (radio
waves).

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• The entire range of electromagnetic radiation is the
electromagnetic spectrum.
• The most important segment for life is a narrow
band between 380 to 750 nm, visible light.

Fig. 10.5
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• While light travels as a wave, many of its
properties are those of a discrete particle, the
photon.
• Photons are not tangible objects, but they do have fixed
quantities of energy.
• The amount of energy packaged in a photon is
inversely related to its wavelength.
• Photons with shorter wavelengths pack more energy.
• While the sun radiates a full electromagnetic
spectrum, the atmosphere selectively screens out
most wavelengths, permitting only visible light to
pass in significant quantities.
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• When light meets matter, it may be reflected,
transmitted, or absorbed.
• Different pigments absorb photons of different
wavelengths.
• A leaf looks green
because chlorophyll,
the dominant pigment,
absorbs red and blue
light, while transmitting
and reflecting green light.

Fig. 10.6

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• A spectrophotometer measures the ability of a
pigment to absorb various wavelengths of light.
• It beams narrow wavelengths of light through a solution
containing a pigment and measures the fraction of light
transmitted at
each wavelength.
• An absorption
spectrum plots a
pigment’s light
absorption versus
wavelength.

Fig. 10.7
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• The light reaction can perform work with those
wavelengths of light that are absorbed.
• In the thylakoid are several pigments that differ in
their absorption spectrum.
• Chlorophyll a, the dominant pigment, absorbs best in
the red and blue wavelengths, and least in the green.
• Other pigments
with different
structures have
different
absorption
spectra.

Fig. 10.8a
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• Collectively, these photosynthetic pigments
determine an overall action spectrum for
photosynthesis.
• An action spectrum measures changes in some measure
of photosynthetic activity (for example, O2 release) as
the wavelength is varied.

Fig. 10.8b

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• The action spectrum of photosynthesis was first
demonstrated in 1883 by an elegant experiment by
Thomas Engelmann.
• In this experiment, different segments of a filamentous
alga were exposed to different wavelengths of light.
• Areas receiving wavelengths favorable to
photosynthesis should produce excess O2.
• Engelmann used the
abundance of aerobic
bacteria clustered
along the alga as a
measure of O2
production.
Fig. 10.8c
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• The action spectrum of photosynthesis does not
match exactly the absorption spectrum of any one
photosynthetic pigment, including chlorophyll a.
• Only chlorophyll a participates directly in the light
reactions but accessory photosynthetic pigments
absorb light and transfer energy to chlorophyll a.
• Chlorophyll b, with a slightly different structure than
chlorophyll a, has a slightly different absorption spectrum
and funnels the energy from these wavelengths to
chlorophyll a.
• Carotenoids can funnel the energy from other
wavelengths to chlorophyll a and also participate in
photoprotection against excessive light.
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• When a molecule absorbs a photon, one of that
molecule’s electrons is elevated to an orbital with
more potential energy.
• The electron moves from its ground state to an excited
state.
• The only photons that a molecule can absorb are those
whose energy matches exactly the energy difference
between the ground state and excited state of this
electron.
• Because this energy difference varies among atoms and
molecules, a particular compound absorbs only photons
corresponding to specific wavelengths.
• Thus, each pigment has a unique absorption spectrum.
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• Photons are absorbed by clusters of pigment
molecules in the thylakoid membranes.
• The energy of the photon is converted to the
potential energy of an electron raised from its
ground state to an excited state.
• In chlorophyll a and b, it is an electron from magnesium
in the porphyrin ring that is excited.

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Fig. 10.9

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• Excited electrons are unstable.
• Generally, they drop to their ground state in a
billionth of a second, releasing heat energy.
• Some pigments, including chlorophyll, release a
photon of light, in a process called fluorescence, as
well as heat.

Fig. 10.10
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• In the thylakoid membrane, chlorophyll is organized
along with proteins and smaller organic molecules
into photosystems.
• A photosystem acts like a light-gathering “antenna
complex” consisting of a few hundred chlorophyll a,
chlorophyll b,
and carotenoid
molecules.

Fig. 10.11
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• When any antenna molecule absorbs a photon, it is
transmitted from molecule to molecule until it
reaches a particular chlorophyll a molecule, the
reaction center.
• At the reaction center is a primary electron
acceptor which removes an excited electron from
the reaction center chlorophyll a.
• This starts the light reactions.
• Each photosystem - reaction-center chlorophyll
and primary electron acceptor surrounded by an
antenna complex - functions in the chloroplast as a
light-harvesting unit.
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• There are two types of photosystems.
• Photosystem I has a reaction center chlorophyll,
the P700 center, that has an absorption peak at
700nm.
• Photosystem II has a reaction center with a peak
at 680nm.
• The differences between these reaction centers (and
their absorption spectra) lie not in the chlorophyll
molecules, but in the proteins associated with each
reaction center.
• These two photosystems work together to use light
energy to generate ATP and NADPH.
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• During the light reactions, there are two possible
routes for electron flow: cyclic and noncyclic.
• Noncyclic electron flow, the predominant route,
produces both ATP and NADPH.

1. When photosystem II absorbs light, an excited

electron is captured by the primary electron
acceptor, leaving the reaction center oxidized.

2. An enzyme extracts electrons from water and

supplies them to the oxidized reaction center.
• This reaction splits water into two hydrogen ions and an
oxygen atom which combines with another to form O 2.
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 3. Photoexcited electrons pass along an electron
transport chain before ending up at an oxidized
photosystem I reaction center.

4. As these electrons pass along the transport

chain, their energy is harnessed to produce ATP.
• The mechanism of noncyclic photophosphorylation is
similar to the process on oxidative phosphorylation.

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 Fig. 10.12

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 5. At the bottom of this electron transport chain,
the electrons fill an electron “hole” in an oxidized
P700 center.

6. This hole is created when photons excite

electrons on the photosystem I complex.
• The excited electrons are captured by a second primary
electron acceptor which transmits them to a second
electron transport chain.
• Ultimately, these electrons are passed from the transport
chain to NADP+, creating NADPH.
• NADPH will carry the reducing power of these high-
energy electrons to the Calvin cycle.
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• The light reactions use the solar power of photons
absorbed by both photosystem I and photosystem
II to provide chemical
energy in the form of
ATP and reducing
power in the form
of the electrons
carried by NADPH.

Fig. 10.13

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• Under certain conditions, photoexcited electrons
from photosystem I, but not photosystem II, can
take an alternative pathway, cyclic electron flow.
• Excited electrons cycle from their reaction center to a
primary acceptor, along an electron transport chain, and
returns to the oxidized P700 chlorophyll.
• As electrons flow along the electron transport chain,
they generate ATP by cyclic photophosphorylation.

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• Noncyclic electron flow produces ATP and
NADPH in roughly equal quantities.
• However, the Calvin cycle consumes more ATP
than NADPH.
• Cyclic electron flow allows the chloroplast to
generate enough surplus ATP to satisfy the higher
demand for ATP in the Calvin cycle.

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• Chloroplasts and mitochondria generate ATP by
the same mechanism: chemiosmosis.
• An electron transport chain pumps protons across a
membrane as electrons are passed along a series of
more electronegative carriers.
• This builds the proton-motive force in the form of an H+
gradient across the membrane.
• ATP synthase molecules harness the proton-motive
force to generate ATP as H+ diffuses back across the
membrane.
• Mitochondria transfer chemical energy from food
molecules to ATP and chloroplasts transform light
energy into the chemical energy of ATP.
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 Fig. 10.14

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• The proton gradient, or pH gradient, across the
thylakoid membrane is substantial.
• When illuminated, the pH in the thylakoid space drops
to about 5 and the pH in the stroma increases to about 8,
a thousandfold different in H+ concentration.
• The light-reaction “machinery” produces ATP and
NADPH on the stroma side of the thylakoid.

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Fig. 10.16
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• Noncyclic electron flow pushes electrons from
water, where they are at low potential energy, to
NADPH, where they have high potential energy.
• This process also produces ATP.
• Oxygen is a byproduct.
• Cyclic electron flow converts light energy to
chemical energy in the form of ATP.

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 CHAPTER 10 PHOTOSYNTHESIS

Section A2: The Pathways of Photosynthesis

4. The Calvin cycle uses ATP and NADPH to convert CO2 to sugar: a closer
look
5. Alternative mechanisms of carbon fixation have evolved in hot, arid
climates
6. Photosynthesis is the biosphere’s metabolic foundation: a review

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4. The Calvin cycle uses ATP and NADPH
to convert CO2 to sugar: a closer look
• The Calvin cycle regenerates its starting material
after molecules enter and leave the cycle.
• CO2 enters the cycle and leaves as sugar.
• The cycle spends the energy of ATP and the reducing
power of electrons carried by NADPH to make the
sugar.
• The actual sugar product of the Calvin cycle is not
glucose, but a three-carbon sugar, glyceraldehyde-3-
phosphate (G3P).
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• Each turn of the Calvin cycle fixes one carbon.
• For the net synthesis of one G3P molecule, the
cycle must take place three times, fixing three
molecules of CO2.
• To make one glucose molecule would require six
cycles and the fixation of six CO2 molecules.

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• The Calvin cycle has three phases.
• In the carbon fixation phase, each CO2 molecule is
attached to a five-carbon sugar, ribulose
bisphosphate (RuBP).
• This is catalyzed by RuBP carboxylase or rubisco.
• The six-carbon intermediate splits in half to form two
molecules of 3-phosphoglycerate per CO2.

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Fig. 10.17.1
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• During reduction, each 3-phosphoglycerate
receives another phosphate group from ATP to
form 1,3-bisphosphoglycerate.
• A pair of electrons from NADPH reduces each 1,3-
bisphosphoglycerate to G3P.
• The electrons reduce a carboxyl group to a carbonyl
group.

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Fig. 10.17.2

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• If our goal was to produce one G3P net, we would
start with 3 CO2 (3C) and three RuBP (15C).
• After fixation and reduction we would have six
molecules of G3P (18C).
• One of these six G3P (3C) is a net gain of carbohydrate.
• This molecule can exit the cycle to be used by the
plant cell.
• The other five (15C) must remain in the cycle to
regenerate three RuBP.

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• In the last phase, regeneration of the CO2 acceptor
(RuBP), these five G3P molecules are rearranged
to form 3 RuBP molecules.
• To do this, the cycle must spend three more
molecules of ATP (one per RuBP) to complete the
cycle and prepare for the next.

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Fig. 10.17.3
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• For the net synthesis of one G3P molecule, the
Calvin recycle consumes nine ATP and six
NAPDH.
• It “costs” three ATP and two NADPH per CO2.
• The G3P from the Calvin cycle is the starting
material for metabolic pathways that synthesize
other organic compounds, including glucose and
other carbohydrates.

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5. Alternative mechanisms of carbon
fixation have evolved in hot, arid climates
• One of the major problems facing terrestrial plants is
dehydration.
• At times, solutions to this problem conflict with other
metabolic processes, especially photosynthesis.
• The stomata are not only the major route for gas
exchange (CO2 in and O2 out), but also for the
evaporative loss of water.
• On hot, dry days plants close the stomata to conserve
water, but this causes problems for photosynthesis.
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• In most plants (C3 plants) initial fixation of CO2
occurs via rubisco and results in a three-carbon
compound, 3-phosphoglycerate.
• These plants include rice, wheat, and soybeans.
• When their stomata are closed on a hot, dry day,
CO2 levels drop as CO2 is consumed in the Calvin
cycle.
• At the same time, O2 levels rise as the light
reaction converts light to chemical energy.
• While rubisco normally accepts CO2, when the
O2/CO2 ratio increases (on a hot, dry day with
closed stomata), rubisco can add O2 to RuBP.
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• When rubisco adds O2 to RuBP, RuBP splits into a
three-carbon piece and a two-carbon piece in a
process called photorespiration.
• The two-carbon fragment is exported from the
chloroplast and degraded to CO2 by mitochondria and
peroxisomes.
• Unlike normal respiration, this process produces no
ATP, nor additional organic molecules.
• Photorespiration decreases photosynthetic output
by siphoning organic material from the Calvin
cycle.

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• A hypothesis for the existence of photorespiraton (a
inexact requirement for CO2 versus O2 by rubisco) is
that it is evolutionary baggage.
• When rubisco first evolved, the atmosphere had far
less O2 and more CO2 than it does today.
• The inability of the active site of rubisco to exclude O2
would have made little difference.
• Today it does make a difference.
• Photorespiration can drain away as much as 50% of the
carbon fixed by the Calvin cycle on a hot, dry day.
• Certain plant species have evolved alternate modes
of carbon fixation to minimize photorespiration.
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• The C4 plants fix CO2 first in a four-carbon
compound.
• Several thousand plants, including sugercane and corn,
use this pathway.
• In C4 plants, mesophyll cells incorporate CO2 into
organic molecules.
• The key enzyme, phosphoenolpyruvate carboxylase,
adds CO2 to phosphoenolpyruvate (PEP) to form
oxaloacetetate.
• PEP carboxylase has a very high affinity for CO2 and
can fix CO2 efficiently when rubisco cannot, i.e. on hot,
dry days when the stomata are closed.

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• The mesophyll cells pump these four-carbon
compounds into bundle-sheath cells.
• The bundle-sheath cells strip a carbon, as CO2, from the
four-carbon compound and return the three-carbon
remainder to the mesophyll cells.
• The bundle-sheath cells then use rubisco to start the
Calvin cycle with an abundant supply of CO2.

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Fig. 10.18

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• In effect, the mesophyll cells pump CO2 into the
bundle sheath cells, keeping CO2 levels high
enough for rubisco to accept CO2 and not O2.
• C4 photosynthesis minimizes photorespiration and
enhances sugar production.
• C4 plants thrive in hot regions with intense
sunlight.

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• A second strategy to minimize photorespiration is
found in succulent plants, cacti, pineapples, and
several other plant families.
• These plants, known as CAM plants for crassulacean
acid metabolism (CAM), open stomata during the
night and close them during the day.
• Temperatures are typically lower at night and
humidity is higher.
• During the night, these plants fix CO2 into a variety of
organic acids in mesophyll cells.
• During the day, the light reactions supply ATP and
NADPH to the Calvin cycle and CO2 is released from
the organic acids.
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• Both C4 and CAM plants add CO2 into organic
intermediates before it enters the Calvin cycle.
• In C4 plants, carbon fixation and the Calvin cycle are
spatially separated.
• In CAM plants, carbon fixation and the Calvin cycle are
temporally separated.
• Both eventually use the Calvin cycle to incorporate
light energy into the production of sugar.

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Fig. 10.19

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6. Photosynthesis is the biosphere’s
metabolic foundation: a review
• In photosynthesis, the energy that enters the
chloroplasts as sunlight becomes stored as chemical
energy in
organic
compounds.

Fig. 10.20
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• Sugar made in the chloroplasts supplies the entire
plant with chemical energy and carbon skeletons to
synthesize all the major organic molecules of cells.
• About 50% of the organic material is consumed as fuel
for cellular respiration in plant mitochondria.
• Carbohydrate in the form of the disaccharide sucrose
travels via the veins to nonphotosynthetic cells.
• There, it provides fuel for respiration and the raw
materials for anabolic pathways including synthesis of
proteins and lipids and building the extracellular
polysaccharide cellulose.

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• Plants also store excess sugar by synthesizing starch.
• Some is stored as starch in chloroplasts or in storage cells in roots,
tubers, seeds, and fruits.
• Heterotrophs, including humans, may completely or
partially consume plants for fuel and raw materials.
• On a global scale, photosynthesis is the most important
process to the welfare of life on Earth.
• Each year, photosynthesis synthesizes 160 billion metric tons of
carbohydrate per year.

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