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Lecture Notes UNIT 1 Introduction and UV-VIS

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Lecture Notes UNIT 1 Introduction and UV-VIS

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CHE 351

Organic Spectroscopy and Aromatic Chemistry


UNIT 1
Introduction to spectroscopy and UV/VIS

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wave properties

• EM radiation is conveniently modeled as waves consisting of


perpendicularly oscillating electric and magnetic fields, as
shown below.
y

x
z Electric Field

Magnetic Field

Direction of
propagation
6

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wave parameters
+ Wavelength ()

Electric Field
Amplitude (A)

- Time or Distance

We Use Symbols to Designate the Various Properties of


Waves
  is the wavelength of the waves
 is the frequency of the waves
 c is the speed of light 8

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Definitions:

 Period (p) – the time required for one cycle to pass a fixed point in
space.

 Frequency() – the number of cycles which pass a fixed point in


space per second.

 Amplitude (A) – The maximum length of the electric vector in the


wave (Maximum height of a wave).

 Wavelength () – The distance between two identical adjacent points


in a wave (usually maxima or minima).

 Wavenumber () - The number of waves per cm in units of cm-1.


9

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV-VIS Spectroscopy
• Ultravialet and visible spectroscopy deals with the recording of the absorption of
radiations in the ultraviolet and visible regions of the electromagnetic spectrum.
• The ultaviolet region extends from 10 to 400 nm. It is subdivided into the near
ultraviolet (quartz) region (200-400 nm) and the far or vacuum ultraviolet region
(10-200 nm).
• The visible region extends from 400 to 800 nm.
• Organic chemists use ultraviolet and visible spectroscopy mainly for detecting the
presence and elucidating the nature of the conjugated multiple bonds or aromatic
rings.

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Purpose of each Electromagnetic Radiation

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


What we measure
• The desired parameter in spectroscopy is absorbance, but it cannot be directly
measured. Thus, a UV-visible spectrophotometer compares the intensity of the
transmitted radiation with that of the incident UV-visible radiation.

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy

The Spectroscopic Process


 In UV spectroscopy, the sample is irradiated with the broad spectrum
of the UV radiation
 If a particular electronic transition matches the energy of a certain
band of UV, it will be absorbed
 The remaining UV light passes through the sample and is observed
 From this residual radiation a spectrum is obtained with “gaps” at
these discrete energies – this is called an absorption spectrum





11

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321
UV Spectroscopy
Observed electronic transitions
 Here is a graphical representation


Unoccupied
LUMO Molecular orbitals


Atomic orbital Non bonding


Energy n orbital

Occupied
HOMO  Molecular orbitals


Molecular orbitals
12

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
Observed electronic transitions
 From the molecular orbital diagram, there are several possible
electronic transitions that can occur, each of a different relative
energy:

HUMO    alkanes   carbonyls

LUMO 

Energy   unsaturated cmpds. n  carbonyls


n
Non bonding
orbital

HOMO

LOMO n  O, N, S, halogens

13

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy

Observed electronic transitions

13

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
Observed electronic transitions
 Although the UV spectrum extends below 100 nm (high energy),
oxygen in the atmosphere is not transparent below 200 nm

 Special equipment to study vacuum or far UV is required

 Routine organic UV spectra are typically collected from 200-700


nm

 This limits the transitions that can be observed:


  alkanes 150 nm

  carbonyls 170 nm

  unsaturated cmpds. 180 nm √ - if conjugated!

n  O, N, S, halogens 190 nm

n  carbonyls 300 nm √ 14

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
Allowed and forbidden transitions
 Transitions between the same symmetry, allowed
 Transitions between different symmetry, forbidden

14

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
Allowed and forbidden transitions
  allowed
 X forbidden

14

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
Observed electronic transitions
 Although the UV spectrum extends below 100 nm (high energy),
oxygen in the atmosphere is not transparent below 200 nm

 Special equipment to study vacuum or far UV is required

 Routine organic UV spectra are typically collected from 200-700


nm

 This limits the transitions that can be observed:


  alkanes 150 nm

  carbonyls 170 nm

  unsaturated cmpds. 180 nm √ - if conjugated!

n  O, N, S, halogens 190 nm

n  carbonyls 300 nm √ 14

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
Observed electronic transitions

14

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
Observed electronic transitions

14

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Experimentally

Violet0 400 - 420 nm Yellow 570 - 585 nm


Indigo 420 - 440 nm Orange 585 - 620 nm
Blue 440 - 490 nm Red 620 - 780 nm
Green 490 - 570 nm

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321
Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321
Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321
UV Spectroscopy

From an experimental point of view, three other


considerations must be made:
 a longer path length, l, through the
sample will cause more UV light to be
absorbed – linear effect

 the greater the concentration, c, of the


sample, the more UV light will be
absorbed – linear effect

 some electronic transitions are more


effective at the absorption of photon than
others – molar absorptivity, 
this may vary by orders of magnitude… 19

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
The Beer-Lambert Law: A= c l

 for most UV spectrometers, l would remain constant (standard


cells are typically 1 cm in path length)

 Concentration c is typically varied depending on the strength of


absorption observed or expected – typically dilute – sub .001 M

 molar absorptivities ε vary by orders of magnitude:


• values of 104-106 are termed high intensity absorptions
• values of 103-104 are termed low intensity absorptions
• values of 0 to 103 are the absorptions of forbidden
transitions

A is unitless, so the units for  are cm-1 x M-1 and are rarely
expressed
Since path length and concentration effects can be easily factored out,
absorbance simply becomes proportional to , and the y-axis is
expressed as  directly or as the logarithm of  20

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy

Selection Rules
 Not all transitions that are possible are observed

 For an electron to transition, certain quantum mechanical


constraints apply – these are called “selection rules”

 For example, an electron cannot change its spin quantum


number during a transition – these are “forbidden”
Other examples include:
• the number of electrons that can be excited at
one time
• symmetry properties of the molecule
• symmetry of the electronic states

 To further complicate matters, “forbidden” transitions are


sometimes observed (albeit at low intensity) due to other
factors 21

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
Instrumentation and Spectra

 Here is a simple schematic that covers most modern UV


spectrometers:

log(I0/I) = A
UV-VIS sources I0 I

sample
200 700

detector
, nm

monochromator/
reference

beam splitter optics I0 I0

22

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy

Instrumentation and Spectra,

 Two sources are required to scan the entire UV-VIS band:


• Deuterium lamp – covers the UV – 200-330
• Tungsten lamp – covers 330-700

 As with the dispersive IR, the lamps illuminate the entire band
of UV or visible light; the monochromator (grating or prism)
gradually changes the small bands of radiation sent to the
beam splitter

 The beam splitter sends a separate band to a cell containing


the sample solution and a reference solution

 The detector measures the difference between the transmitted


light through the sample (I) vs. the incident light (I0) and
sends this information to the recorder
23

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy
Instrumentation – Sample Handling

 Solvents must be transparent in the region to be observed; the


wavelength where a solvent is no longer transparent is referred to as
the cutoff

 Since spectra are only obtained up to 200 nm, solvents typically only
need to lack conjugated  systems or carbonyls

Common solvents and cutoffs:


acetonitrile 190
chloroform 240
cyclohexane 195
1,4-dioxane 215
95% ethanol 205
n-hexane 201
methanol 205
isooctane 195
water 190

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


MOLECULAR ABSORPTION SPECTRA

 The sharpness of molecular absorption


spectra also depends on the state of the
sample.

 Figure (a) shows an absorption band due


to transitions between electronic-
vibrational-rotational states

 Figure (c) shows a continuous spectra


due to the sample is in the condensed
state. In condensed states the spectra
broaden due to molecular collisions.

27

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


UV Spectroscopy

 Due to the lack of any fine structure, spectra are rarely


shown in their raw form, rather, the peak maxima are simply
reported as a numerical list of “lamba max” values or max

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321 29


UV Spectroscopy
Instrumentation – Sample Handling

 Additionally solvents must preserve the fine structure (where it is


actually observed in UV!) where possible

 H-bonding further complicates the effect of vibrational and rotational


energy levels on electronic transitions, dipole-dipole interacts less so

 The more non-polar the solvent, the better (this is not always
possible)

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


STRUCTURE ELUCIDATION

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


WHAT IS A CHROMOPHORE?
• Although the absorption of ultraviolet radiation results from the excitation of
electrons from ground to excited states, the nuclei that the electrons hold
together in bonds play an important role in determining which wavelengths
of radiation are absorbed
• The nuclei determine the strength with which the electrons are bound and
thus influence the energy spacing between ground and excited states
• Hence, the characteristic energy of a transition and the wavelength of
radiation absorbed are properties of a group of atoms rather than of
electrons themselves
• The group of atoms producing such an absorption is called a
chromophore.

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Saturated molecules
• Alkanes.
• For molecules, such as alkanes, that contain nothing but single bonds
and lack atoms with unshared electron pairs (or pi electrons),
• The only electronic transitions possible are of the  type.
• These transitions are of such a high energy that they absorb ultraviolet
energy at very short wavelengths—shorter than the wavelengths that
are experimentally accessible using typical spectrophotometers.

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Saturated molecules
• Alcohols, Ethers, Amines, and Sulfur Compounds.
• In saturated molecules that contain atoms bearing nonbonding pairs of
electrons, transitions of the n type become important.

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Saturated molecules
• Even though the alcohols, ethers, amines, and sulfur
compounds are saturated and they have high-energy
transitions, they do absorb radiation that lies within an
experimentally accessible range.
• Alcohols and amines absorb in the range from 175 to 200 nm,
while organic thiols and sulfides absorb between 200 and 220
nm. Most of the absorptions are below the cutoff points for the
common solvents, so they are not observed in solution spectra.

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Absorptions of simple isolated chromophore
• You may notice that these simple chromophores nearly all
absorb at approximately the same wavelength (160 to 210 nm)

Basic chromophore
structures

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Absorptions of simple isolated chromophore
• You may notice that these simple chromophores nearly all
absorb at approximately the same wavelength (160 to 210 nm)

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Auxochromes
• The attachment of substituent groups in place of hydrogen on a
basic chromophore structure changes the position and intensity
of an absorption band of the chromophore.
• The substituent groups may not give rise to the absorption of
the ultraviolet radiation themselves, but their presence
modifies the absorption of the principal chromophore.
• Substituents that increase the intensity of the absorption, and
possibly the wavelength, are called auxochromes. Typical
auxochromes include methyl, hydroxyl, alkoxy, halogen, and
amino groups

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Auxochromes
 It has at least one non bonding electron pair that can extend
conjugation with chromophore e.g OH, NH2, COOH, OR

 Note that axochromes do not absorb radiation in UV vis


themselves

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wavelength Predictions

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wavelength Predictions

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wavelength Predictions

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wavelength Predictions

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wavelength Predictions

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wavelength Shifts
• Terminologies of absorption shifts

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wavelength Shifts
Hyperhromatic shifts; Increase in
absorption intensity; caused by
axochromatc

Hypsochromatic Bathochromatic(red
(blue) shift; Move to
shift;) Move to longer
shorter wavelength
wavelength cuase by
cause by removal of
axochrome or change
conjugation or change

of solvent of solvent

Hypohromatic decrease in
absorption intensity; Cause by
molecules that change the geometry
Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321
of compounds
Wavelength Shifts
• The effect of conjugation
• One of the best ways to bring about a bathochromic shift (Red Shift) is to increase
the extent of conjugation in a double-bonded system.
• In the presence of conjugated double bonds, the electronic energy levels of a
chromophore move closer together. As a result, the energy required to produce a
transition from an occupied electronic energy level to an unoccupied level decreases,
and the wavelength of the light absorbed becomes longer

B=4
A=3
C=5

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Wavelength Shifts
• The effect of conjugation on alkenes
• The bathochromic shift that results from an increase in the length of a
conjugated system implies that an increase in conjugation decreases
the energy required for electronic excitation
• The energy gap dividing the bonding and antibonding orbitals becomes
progressively smaller with increasing conjugation.

Arrows indicate the HOMO–LUMO


transitions. The increased
conjugation shifts the observed
wavelength of the absorption to
higher values.

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules
• Calculating wavelengths for Dienes
• In general, conjugated dienes exhibit an intense band (e = 20,000 to
26,000) in the region from 217 to 245 nm
• Generally, alkyl substitution produces bathochromic shifts and
hyperchromic effects. However, with certain patterns of alkyl
substitution, the wavelength increases but the intensity decreases

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules
• Calculating wavelengths for Dienes

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules
• Calculating wavelengths for Dienes

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules
• Calculating wavelengths for Conjugated Carbonyl Compounds

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules
• Example 1

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules
• Example 2

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Woodward-Fieser Rules
• Example 3

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Aromatic Compounds
2. Substituent Effects
a. Substituents with Unshared Electrons
• pH can change the nature of the substituent group
• deprotonation of oxygen gives more available n-pairs,
lowering transition energy
• protonation of nitrogen eliminates the n-pair,
raising transition energy

Primary Secondary
Substituent max  max 
-H 203.5 7,400 254 204
-OH 211 6,200 270 1,450
-O- 235 9,400 287 2,600
-NH2 230 8,600 280 1,430
-NH3+ 203 7,500 254 169
-C(O)OH 230 11,600 273 970
-C(O)O- 224 8,700 268 560
48

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Aromatic Compounds
2. Substituent Effects
d. Polynuclear aromatics
• When the number of fused aromatic rings increases,
the  for the primary and secondary bands also
increase

• For heteroaromatic systems spectra become complex 50


with the addition of the n  * transition and ring size
Tembo ZN (MSc Chemistry, Bed. Sc) effects and are unique to each case CHE 321
Color
1. General
• When white (continuum of ) light passes through, or is
reflected by a surface, those ls that are absorbed are
removed from the transmitted or reflected light respectively

• What is “seen” is the complimentary colors (those that are


not absorbed)

• This is the origin of the “color wheel”

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Color
1. General
• Organic compounds that are “colored” are typically those with
extensively conjugated systems (typically more than five)

• Consider -carotene

-carotene, max = 455 nm

max is at 455 – in the far blue region


of the spectrum – this is absorbed

The remaining light has the


complementary color of orange

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Color
1. General
• Likewise:

lycopene, max = 474 nm

O
H
N

N
H
O
indigo

max for lycopene is at 474 – in the near blue region of


the spectrum – this is absorbed, the compliment is now
red

max for indigo is at 602 – in the orange region of the


spectrum – this is absorbed, the compliment is now 53
indigo!

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321


Color
1. General
• In the chemical sciences these are the acid-base indicators
used for the various pH ranges:

• Remember the effects of pH on aromatic substituents


Methyl Orange

CH3 CH3
N H
O3S N N NN N
CH3 O 3S CH3

Yellow, pH > 4.4 Red, pH < 3.2

54

Tembo ZN (MSc Chemistry, Bed. Sc) CHE 321

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