Taxonomy and Biodiversity Overview
Taxonomy and Biodiversity Overview
What is Taxonomy?
Taxonomy is science of naming, describing and classifying organisms based on the comparative studies from
morphology, physiology, anatomy, cytology, genetics, paleontology and etc.
2. Scientific name of organisms enables the communication and exchange of data and information to be carried out effectively within the
scientific community.
3. Nomenclature allows taxonomist to give scientific names to organisms scattered all over the world.
4. Natural classification system provides information on the evolutionary relationship between organisms.
5. Taxonomy provides evidence to support organic evolution as taxonomists can discover the natural relationship among organisms in
different categories in the Linnaeus hierarchy.
6. Taxonomy allows biologists to continuously discover unknown species and to update information on biodiversity and evolution.
7. Taxonomy enables ecologists to discover ecological relationship between organisms and the environment
Taxonomic Hierarchy
Kingdom – the largest and most inclusive rank
Kingdom Protoctista
The simplest of the eukaryotes.
Contain membrane bound nucleus and organelles such as ribosomes, mitochondria and lysosomes.
Can be unicellular or multicellular (organized into colonies)
Reproduce sexually and asexually.
Require an aquatic environment.
Protoctists are a diverse group: fungus-like, plant-like and animal-like forms.
Characteristics of Algae
The body of an alga is a photosynthetic thallus (a vegetative body which not differentiated into
stem, leaves or root)
Algae found mostly in aquatic environments.
Cells are surrounded by cell walls and cytoplasm contains one or more large vacuole.
Possess photosynthetic pigments in organelles.
Phylum Chlorophyta
Characteristic:
Spirogyra is a filamentous, non-motile green alga.
Its cells form long, thin strands that, in vast numbers, contribute to the familiar
green, slimy ‘blanket weed’ in ponds. Under the microscope, each filament consists
of an extensive chain of identical cells.
Photosynthesis Yes
Characteristic of Protozoa
Unicellular eukaryotic organisms.
No tissue organisation. vacuole Cytoplasmic strand cytoplasm Spiral chloroplast
Locomotion: pseudopodia, cilia or flagella.
Autotrophic or heterotreophic nutrition.
Phylum Zoomastigina
Characteristic:
Some are autotrophic (have chlorophyll a and b); some are heterotrophic (lack
chloroplast).
Have one or two flagella.
Only asexual reproduction by binary fission.
No cell wall; has a thin, tough, elastic pellicle composed of proteins that protects
and maintains its shape
Photosynthesis Yes
Motility Yes
Cell wall No
Examples Euglena
Kingdom Fungi
Multicellular eukaryotes.
Lack chlorophyll, non-photosynthetic; they are heterotrophic – either parasites, saprotrophs, or mutualist.
Non-motile, cilia and flagella absent.
Carbohydrate storage: glycogen, not starch.
Spores are produced sexually and asexually.
The basic structural features of fungi are called hyphae.
Pigment -
Reproduction Sporulation
Motility No
- Mucor
Examples
- Rhizopus (both are phylum Zygomycota)
Mucor Rhizopus
Kingdom Plantae
Multicellular eukaryotes, contains chloroplasts, autotrophic, derive energy by photosynthesis.
Cell walls made of cellulose; food storage: starch.
Advanced plants (e.g. angiosperms & conifers) – have proper stems, leaves and roots; reproduce
sexually by the production of seeds.
Primitive forms of plant (e.g. liverworts) – have thalli and reproduce by production of spores.
All plant life cycle involve alternation of generation
Cont...
Alternation of Generations:
Thallus/true body Thallus (body parts cannot be differentiated to true leave, stem and root).
Vascular tissue? No
Flower/fruit present? No
- Marchantia
Examples
- Funaria
Phylum Filicinophyta / Pteridophyta
Characteristic:
All the ferns are classified under this phylum.
Ferns are terrestrial and common in temperate woodlands and tropical rainforests. They can be
found on the branches of tress, riverbanks and even desert
Show alternation of generations: sporophyte (2n) generation is dominant.
Gametophyte generation is reduced to a small, simple, independent and photosynthetic
prothallus. Compare to bryophyte, filicinophyte is more advance because of those characteristics.
The dominant in sporophyte generation enables ferns to withstands the dryness.
True body (the body parts can be differentiated to true leaves, stems and
Thallus/true body
roots)
Yes but incomplete; only has tracheids and sieve tube (reason why
Vascular tissue?
Filicinophyta is more advance than Bryophyta)
Habitat Terrestrial
Flower/fruit present? No
Examples Dryopteris
Phylum Coniferophyta
Characteristic:
Naked seeds, not enclosed in an ovary.
and fruits are not produced.
No xylem vessels, only tracheids are present.
Albuminous cells instead of companion cells are found in phloem tissue.
Show alternation of generations
The plant is heterosporous: produce 2 types of spores: megaspores and microspores.
Siphonogamy.
Yes but incomplete; only has tracheids (xylem) and sieve tube and
Vascular tissue?
albuminous cell (phloem)
Habitat Terrestrial
Flower/fruit present? No
Examples Pinus
Phylum Angiospermophyta
Characteristic:
Angiosperms = flowering plants.
Sporophyte generation is dominant.
Heterosporous
Angiosperms are divided into 2 classes:
1. Monocotyledonae 2. Dicotyledonae
Siphonogamy: male gamete is non-motile and it reaches the female gamete through formation of
pollen tube.
Habitat Terrestrial
Monocotyledonae Dicotyledonae
Secondary growth absent. (no cambium) Secondary growth often present. (cambium present)
Radial symmetry – body can be divided into roughly equal halves by more than one straight line or
plane which passes through the central point of the body.
Bilateral symmetry – only a single line or plane can divide the body into equal halves.
Diploblastic: an animal possessing 2 major tissue layers. These include the outer layer (the
ectoderm) and the inner layer (the endoderm).
Triploblastic: an animal possessing 3 major tissue layers. It has a middle layer (the mesoderm),
between the endoderm and the ectoderm.
Coelom: fluid-filled cavity within the mesoderm. It is not the gut. Having a coelom gives the animal
certain advantages: a. It enables independent movement of the gut wall and the body wall. b. It
provides space of the enlargement and development of internal organs. c. It may acts as a
circulatory medium for transport of materials or a storage area of excess or waste materials.
Coelomate: animals with a body cavity lying between the digestive tract and body wall that is
completely lined with mesoderm (true body cavity).
Acoelomate: animals without a body cavity.
Pseudocoelomate: animals with a body cavity lying between the digestive tract and body wall
that is incompletely lined with mesoderm. (false body cavity)
Deuterostomes: group of coelomate animals which the blastopore is associated with the anus, a
second opening is associated with the mouth.
Protostomes: group of coelomate animals in which the blastopore is associated with the mouth.
Gastrulation in protostome and deuterostome embryos. In protostomes, the initial site of ingrowth
or invagination (blastopore) becomes the mouth. In deuterostomes, the initial site of ingrowth or
invagination (blastopore) becomes the anus.
Phylum Porifera
Example: sponges
Hollow tube with a large opening at the top called osculum. There are numerous pore cells (called
porocytes) in the body wall. Water enters the body of the sponge through the pores (ostia).
Body wall consists of two layers of cells. Outer surface is covered by epithelial cells; inner layer
consists mainly collar cells or choanocytes, each of which possess single flagellum.
Permenantly attached to rocks or the sea bed, obtain food by extracting plankton from water.
Characteristics:
All sponges are marine.
Sessile, multicellular animals, body lacks symmetry.
No specialised tissues or organs; contracted from just few main types of cell.
Diploblastic.
Lack nervous system.
Asexual reproduction: budding or regeneration.
Sexual reproduction: fertilisation between male and female gametes.
Lack of body symmetry
Phylum Cnidari/Coelentrata
Example: Obelia and Hydra
Obelia:
Tentacles – having stinging cells called cnidocytes which secrete a stinging capsule called
nematocyst.
Medusa – active, free-living form. It is used as a mean of dispersal.
Mouth – opening for ingestion and egestion. No anus. Food is taken through mouth into the single
gastrovascular cavity (enteron).
Polyp – cylindrical and sessile form; attached to a firm substrate.
Phylum Cnidaria takes its name from the presence of unique stinging cells called cnidocytes. The
phylum includes such animals as plant like hydroids, colourful sea anemone, graceful jellyfish and
the reef forming corals.
Characteristics:
Nearly all marine. Tentacles Obelia:
Tentacles – having stinging cells called cnidocytes which secrete a stinging capsule called
nematocyst.
Medusa – active, free-living form. It is used as a mean of dispersal.
Mouth – opening for ingestion and egestion. No anus. Food is taken through mouth into the single
gastrovascular cavity (enteron).
Polyp – cylindrical and sessile form; attached to a firm substrate.
Diploblastic: 2 layers of cells ectoderm and endoderm; with a jellylike mesoglea between them.
Radial symmetry.
Have 2 basic body forms (called dimorphic). Polyp and Medusa. Hydra occur only as polyps; some
alternate between 2 forms.
Reproduction: asexual (budding) and sexual.
Nervous system present in forms of irregular nerve net.
Phylum Platyhelminthes
Example: Taenia, Planaria
Characteristics:
All are flatworms.
Triploblastic acoelomate.
Bilateral symmetry.
Unsegmented and flattened dorso-ventrally from top to bottom.
Single gastrovascular cavity, only one opening – the mouth, no anus.
Gut is branched and extends throughout the body.
Hermaphrodite: each individual contains both male and female sexual structures; internal
fertilisation.
Phylum Arthropoda
Example 1: Periplaneta (class insecta)
Characteristics:
3 pairs of jointed appendages
Metamerically segemented body.
Phylum Chordata
Characteristics:
Bilaterally symmetrical, triploblastic coelomates.
Notochord present at some age of their life cycle. Notochord is a flexible rod of tightly packed,
vacuolated cells held together within a firm sheath. It is located just below the nerve cord. The
notochord runs along the back in the embryo of all chordates. It persists in primitive chordates but
in most vertebrates it is replaced by the vertebral column (backbone).
Chordates have a dorsal, hollow nerve cords.
Pharyngeal clefts – present in all chordates embryo. They retained in primitive chordates, become
gills in fish but are reduced or lost in some adult chordates.
Have post-anal tail at some stage of their life cycle. May be reduced or lost in some adult
chordates.
The muscle are arranged in segmented blocks (myotomes) on either side of the body. This allows
rapid, versatile movement.
Closed blood system.
Biodiversity in Malaysia
Biodiversity: the total number of different species within an ecosystem and the complexity of the
interactions among them.
Biodiversity usually is defined at 3 levels: species diversity, genetic diversity and ecosystem
diversity.
It refers not only to species richness (number of different species) but also to
species abundance (number of individuals in each species). It is a measure of
Species diversity
the distribution of each species, its producticity and the population size. It gives
us an idea of the relative importance of each species in the community.
The genetic variety within a species. It considers the total number of different
Genetic diversity
alleles or genes within a species.
Ecosystem diversity It refers to the variety of interaction within and among ecosystems.
Ecosystem with high biodiversity are more productive, more stable and able to withstand disturbances
compared to ecosystems with reduced biodiversity.
Many species in Malaysia forests are endemic. (they are not found anywhere else in the world) Endemic
species are highly susceptible to habitat loss caused mainly by human activities.
2. Economic benefits
Timber and non-timber goods, food and industrial crops in the agricultural sector, food in the
fishes sector.
Biologically active compounds from indigenous plants and animals which can be starting
materials for drugs, potential for development of pharmaceuticals, antibiotics, and vaccines
through biotechnology
Floriculture – orchids and other exotic flowers.
3. Environmental stability
A reduction of biodiversity will threaten the balance within the many different ecosystems,
leading to a loss of ecological resilience which will adversely affect human lives.
2. Overexploitation
Fishing techniques such as fish bombing and the usage of trawling nets kills inedible fishes
and destroys the marine system.
Many organisms are overexploited by illegal hunting to obtain resources for industries such
as fashion industry, ornamental organisms, exotic food and traditional medicines.
Mangrove swamps are overexploited for wood and food such as fishes, crabs and prawns.
4. Pollution
Pollution is caused by human activities.
Air pollution, water pollution, noise pollution and thermal pollution cause destruction to the
ecosystem.
Rivers and beaches are polluted by agricultural and industrial wastes.
Acid rain cause soil and water bodies to become acidic, therefore becoming unsuitable to
organisms.
Depletion of the ozone layer causes the destruction of chlorophyll and the death of some
organisms. Thus, food chains are affected.
Greenhouse effect or global warming increases the temperature of the Earth
causing climate change and destruction to organisms.
Steps and efforts taken to address
the threats
Restricting urban and industrial development.
Legislating the protection of endangered and keystone species, and enforcement of the law.
Carrying out breeding programmes and establishing sperm/seed banks to maintain high
biodiversity.
Establishing conservation areas such as national parks, nature reserves, sactuaries, zoos and
Effective pollution control methods, especially when wildlife species are vulnerable to
pollutants.
emphasised.
Campaigns should be organised to create public awareness about the conservation of the
biodiversity.
In Situ Conservation
Parks and reserves are established to protect and preserve threatened or endangered
National parks, such as Taman Negara, are not only sanctuaries for hundreds of vulnerable
The disadvantage of this approach is that it is expensive in terms of time and money needed
Only about 3% of the world’s land surface has been designated or protected as national parks
or reserves.
Ex Situ Conservation
This refers to the conservation and protection of biodiversity in controlled environments, for
organisms and the consequent reintroduction of these organisms into the wild.
Artificial insemination and host mothering are used to increase the number of offspring in
Host mothering involves treating females of rare species with fertility drugs, collecting the
eggs and getting them inseminated, and finally implanting them in genetically-related but
more hardly species. These surrogate mother used ex situ to increase the numbers of
Zoox and botanical gardens educate the public about the value of conservation, even though
they generally house the more exotic species only. Inconspicuous species are often
overlooked.
Exercise
1. Helianthus and Zea are different from Pinus and Dryopteris because they have
A. Seeds
B. Flowers
C. Vascular systems
D. Dominant sporophytic phases
4. Which is a reason for putting Mucor into Kingdom Fungi instead of Plantae?
A. It is a heterotroph
B. It reproduces by sporulation
C. It does not produce flowers, fruits and seeds
D. It consists of mycelium