data mining 3
data mining 3
■ Data Reduction
■ Data Transformation and Data Discretization
■ Summary
1
Data Quality: Why Preprocess the Data?
■ Measures/Factors for data quality: A multidimensional
view
■ Accuracy: correct or wrong, accurate or not
■ Completeness: not recorded, unavailable, …
■ Consistency: some modified but some not, dangling, …
■ Timeliness: timely update?
■ Believability: how trustable the data are correct?
■ Interpretability: how easily the data can be
understood?
2
Major Tasks in Data Preprocessing
■ Data cleaning
■ Fill in missing values, smooth noisy data, identify or remove
outliers, and resolve inconsistencies
■ Data integration
■ Integration of multiple databases, data cubes, or files
■ Data reduction
■ Dimensionality reduction
■ Numerosity reduction
■ Data compression
■ Data transformation and data discretization
■ Normalization (Scaling the data)
■ Discritization (Continuous values to interval scaled values)
■ Concept hierarchy generation
3
Chapter 3: Data Preprocessing
■ Data Reduction
■ Data Transformation and Data Discretization
■ Summary
4
Data Cleaning
■ Data in the Real World Is Dirty: Lots of potentially incorrect data,
e.g., instrument faulty, human or computer error, transmission error
■ incomplete: lacking attribute values, lacking certain attributes of
interest, or containing only aggregate data
■ e.g., Occupation=“ ” (missing data)
■ noisy: containing noise, errors, or outliers
■ e.g., Salary=“−10” (an error)
■ inconsistent: containing discrepancies in codes or names, e.g.,
■ Age=“42”, Birthday=“03/07/2010”
■ Was rating “1, 2, 3”, now rating “A, B, C”
5
Incomplete (Missing) Data
■ Data is not always available
■ E.g., many tuples have no recorded value for several
attributes, such as customer income in sales data
■ Missing data may be due to (Not Applicable, Known &
Not entered, unknown)
■ equipment malfunction
■ inconsistent with other recorded data and thus deleted
■ data not entered due to misunderstanding
■ certain data may not be considered important at the
time of entry
■ not register history or changes of the data
■ Missing data may need to be inferred
6
How to Handle Missing Data?
■ Ignore the tuple: usually done when class label is missing
(when doing classification)—not effective when the % of
missing values per attribute varies considerably
■ Fill in the missing value manually: tedious + infeasible
■ Fill in it automatically with
■ a global constant : e.g., “unknown”, “null”, a new class
■ the attribute mean/median
■ the attribute mean/median for all samples belonging to
the same class: smarter
■ the most probable value: inference-based such as
Bayesian formula or decision tree
7
Noisy Data
■ Noise: random error or variance in a measured variable
■ Incorrect attribute values may be due to
■ faulty data collection instruments
■ technology limitation
■ incomplete data
■ inconsistent data
8
How to Handle Noisy Data?
■ Binning
■ first sort data and partition into (equal-frequency) bins
■ Clustering
■ detect and remove outliers
9
Data Cleaning as a Process
■ Data discrepancy detection
■ Use metadata (e.g., domain, range, dependency, distribution)
■ Check field overloading
■ Check uniqueness rule, consecutive rule and null rule
■ Use commercial tools
■ Data scrubbing: use simple domain knowledge (e.g., postal
10
Chapter 3: Data Preprocessing
■ Data Reduction
■ Data Transformation and Data Discretization
■ Summary
11
Data Integration
■ Data integration:
■ Combines data from multiple sources into a coherent store
■ Schema integration: e.g., A.cust-id ≡ B.cust-Number
■ Integrate metadata from different sources
■ 1. Entity identification problem:
■ Identify real world entities from multiple data sources, e.g., Bill
Clinton = William Clinton
■ Detecting and resolving data value conflicts
■ For the same real world entity, attribute values from different
sources are different
■ Possible reasons: different representations, different scales, e.g.,
metric vs. British units
12
Handling Redundancy in Data Integration
14
Correlation Analysis (Nominal Data)
■ Χ2 (chi-square) test
■ The larger the Χ2 value, the more likely the variables are
related
■ The cells that contribute the most to the Χ2 value are
those whose actual count is very different from the
expected count
■ Correlation does not imply causality
■ # of hospitals and # of car-theft in a city are correlated
■ Both are causally linked to the third variable: population
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Chi-Square Calculation: An Example
Play chess Not play chess Sum (row)
Like science fiction 250(90) 200(360) 450
Not like science fiction 50(210) 1000(840) 1050
Sum(col.) 300 1200 1500
■ Hypothesis : Liking science fiction and Playing chess are not correlated
(Independent).
■ Χ2 (chi-square) calculation (numbers in parenthesis are expected
counts calculated based on the data distribution in the two categories)
17
Visually Evaluating Correlation
Scatter plots
showing the
similarity from
–1 to 1.
18
Correlation (viewed as linear relationship)
■ Correlation measures the linear relationship
between objects
■ To compute correlation, we standardize data
objects, A and B, and then take their dot product
19
Covariance (Numeric Data)
■ Covariance is similar to correlation
Correlation coefficient:
■ Suppose two stocks A and B have the following values in one week:
(2, 5), (3, 8), (5, 10), (4, 11), (6, 14).
■ Question: If the stocks are affected by the same industry trends, will
their prices rise or fall together?
■ Data Reduction
■ Data Transformation and Data Discretization
■ Summary
22
22
Data Reduction Strategies
■ Data reduction: Obtain a reduced representation of the data set that
is much smaller in volume but yet produces the same (or almost the
same) analytical results
■ Why data reduction? — A database/data warehouse may store
terabytes of data. Complex data analysis may take a very long time to
run on the complete data set.
■ Data reduction strategies
■ Dimensionality reduction, e.g., remove unimportant attributes
■ Principal Components Analysis (PCA)
aggregation
■ Data compression
23
Data Reduction 1: Dimensionality Reduction
■ Curse of dimensionality
■ When dimensionality increases, data becomes increasingly sparse
■ Density and distance between points, which is critical to clustering, outlier
analysis, becomes less meaningful
■ The possible combinations of subspaces will grow exponentially
■ Dimensionality reduction
■ Avoid the curse of dimensionality
■ Help eliminate irrelevant features and reduce noise
■ Reduce time and space required in data mining
■ Allow easier visualization
■ Dimensionality reduction techniques
■ Principal Component Analysis
■ Supervised and nonlinear techniques (e.g., feature selection)
24
Principal Component Analysis (PCA)
■ Find a projection that captures the largest amount of variation in data
■ The original data are projected onto a much smaller space, resulting
in dimensionality reduction. We find the eigenvectors of the
covariance matrix, and these eigenvectors define the new space
x2
x1
25
Principal Component Analysis (Steps)
■ Given N data vectors from n-dimensions, find k ≤ n orthogonal vectors
(principal components) that can be best used to represent data
■ Normalize input data: Each attribute falls within the same range
■ Compute k orthonormal (unit) vectors, i.e., principal components
■ Each input data (vector) is a linear combination of the k principal
component vectors
■ The principal components are sorted in order of decreasing
“significance” or strength
■ Since the components are sorted, the size of the data can be
reduced by eliminating the weak components, i.e., those with low
variance (i.e., using the strongest principal components, it is
possible to reconstruct a good approximation of the original data)
■ Works for numeric data only
26
Attribute Subset Selection
■ Another way to reduce dimensionality of data
■ Redundant attributes
■ Duplicate much or all of the information contained in
one or more other attributes
■ E.g., purchase price of a product and the amount of
sales tax paid
■ Irrelevant attributes
■ Contain no information that is useful for the data
mining task at hand
■ E.g., students' ID is often irrelevant to the task of
predicting students' GPA
27
Heuristic Search in Attribute Selection
28
Attribute Creation (Feature Generation)
■ Create new attributes (features) that can capture the
important information in a data set more effectively than
the original ones
■ Three general methodologies
■ Attribute extraction
■ Domain-specific
■ Mapping data to new space (see: data reduction)
■ Attribute construction
patterns)
■ Data discretization
29
Data Reduction 2: Numerosity Reduction
■ Reduce data volume by choosing alternative, smaller
forms of data representation
■ Parametric methods (e.g., regression)
■ Regression :Assume the data fits some model,
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Parametric Data Reduction: Regression and
Log-Linear Models
■ Linear regression
■ Data modeled to fit a straight line
■ Multiple regression
■ Allows a response variable Y to be modeled as a
distributions
31
y
Regression Analysis
Y1
■ Regression analysis: A collective name for
techniques for the modeling and analysis of Y1’
y=x+1
numerical data consisting of values of a
dependent variable (also called response
variable or measurement) and of one or x
X1
more independent variables (aka.
explanatory variables or predictors)
■ Used for prediction
■ The parameters are estimated so as to give (including forecasting of
a "best fit" of the data time-series data), inference,
■ Most commonly the best fit is evaluated by hypothesis testing, and
modeling of causal
using the least squares method, but other
relationships
criteria have also been used
32
Regress Analysis and Log-Linear Models
■ Linear regression: Y = w X + b
■ Two regression coefficients, w and b, specify the line and are to be
estimated by using the data at hand
■ Using the least squares criterion to the known values of Y1, Y2, …,
X1, X2, ….
■ Multiple regression: Y = b0 + b1 X1 + b2 X2
■ Many nonlinear functions can be transformed into the above
■ Log-linear models:
■ Approximate discrete multidimensional probability distributions
■ Estimate the probability of each point (tuple) in a multi-dimensional
space for a set of discretized attributes, based on a smaller subset
of dimensional combinations
■ Useful for dimensionality reduction and data smoothing
33
Histogram Analysis
■ Single attribute, Multiple
attributes(Multidimensional
histograms).
■ Divide data into buckets and
store average (sum) for each
bucket
■ Partitioning rules:
■ Singleton buckets
range
■ Equal-frequency (or
equal-depth)
34
Clustering
■ Partition data set into clusters based on similarity, and
store cluster representation (e.g., centroid and diameter)
only
■ Can be very effective if data is clustered but not if data
is “smeared”
■ Can have hierarchical clustering and be stored in
multi-dimensional index tree structures
■ There are many choices of clustering definitions and
clustering algorithms
■ Cluster analysis will be studied in depth in Chapter 10
35
Sampling
W O R
SRS le random
i m p h ou t
(s e wi t
p l
sam ment)
p l a ce
re
SRSW
R
Raw Data
38
Sampling: Cluster or Stratified Sampling
39
Data Cube Aggregation
s s y
lo
Original Data
Approximated
42
Chapter 3: Data Preprocessing
■ Data Reduction
■ Data Transformation and Data Discretization
■ Summary
43
Data Transformation
■ A function that maps the entire set of values of a given attribute to a
new set of replacement values s.t. each old value can be identified
with one of the new values
■ Methods
■ Smoothing: Remove noise from data
■ Attribute/feature construction
■ New attributes constructed from the given ones
■ Aggregation: Summarization, data cube construction
■ Normalization: Scaled to fall within a smaller, specified range
■ min-max normalization
■ z-score normalization
■ normalization by decimal scaling
■ Discretization: Concept hierarchy climbing 44
Normalization
■ Min-max normalization: to [new_minA, new_maxA]
45
Discretization
■ Three types of attributes
■ Nominal—values from an unordered set, e.g., color, profession
■ Ordinal—values from an ordered set, e.g., military or academic
rank
■ Numeric—real numbers, e.g., integer or real numbers
■ Discretization: Divide the range of a continuous attribute into intervals
■ Interval labels can then be used to replace actual data values
■ Reduce data size by discretization
■ Supervised vs. unsupervised
■ Split (top-down) vs. merge (bottom-up)
■ Discretization can be performed recursively on an attribute
■ Prepare for further analysis, e.g., classification
46
Data Discretization Methods
■ Typical methods: All the methods can be applied recursively
■ Binning
■ Top-down split, unsupervised
■ Histogram analysis
■ Top-down split, unsupervised
■ Clustering analysis (unsupervised, top-down split or
bottom-up merge)
■ Decision-tree analysis (supervised, top-down split)
■ Correlation (e.g., χ2) analysis (unsupervised, bottom-up
merge)
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Simple Discretization: Binning
■ Equal-width (distance) partitioning
■ Divides the range into N intervals of equal size: uniform grid
■ if A and B are the lowest and highest values of the attribute, the
width of intervals will be: W = (B –A)/N.
■ The most straightforward, but outliers may dominate presentation
■ Skewed data is not handled well
48
Binning Methods for Data Smoothing
❑ Sorted data for price (in dollars): 4, 8, 9, 15, 21, 21, 24, 25, 26,
28, 29, 34
* Partition into equal-frequency (equi-depth) bins:
- Bin 1: 4, 8, 9, 15
- Bin 2: 21, 21, 24, 25
- Bin 3: 26, 28, 29, 34
* Smoothing by bin means:
- Bin 1: 9, 9, 9, 9
- Bin 2: 23, 23, 23, 23
- Bin 3: 29, 29, 29, 29
* Smoothing by bin boundaries:
- Bin 1: 4, 4, 4, 15
- Bin 2: 21, 21, 25, 25
- Bin 3: 26, 26, 26, 34
49
Discretization Without Using Class Labels
(Binning vs. Clustering)
50
Discretization by Classification &
Correlation Analysis
■ Classification (e.g., decision tree analysis)
■ Supervised: Given class labels, e.g., cancerous vs. benign
■ Using entropy to determine split point (discretization point)
■ Top-down, recursive split
■ Details to be covered in Chapter 7
■ Correlation analysis (e.g., Chi-merge: χ2-based discretization)
■ Supervised: use class information
■ Bottom-up merge: find the best neighboring intervals (those
having similar distributions of classes, i.e., low χ2 values) to merge
■ Merge performed recursively, until a predefined stopping condition
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Concept Hierarchy Generation
■ Concept hierarchy organizes concepts (i.e., attribute values)
hierarchically and is usually associated with each dimension in a data
warehouse
■ Concept hierarchies facilitate drilling and rolling in data warehouses to
view data in multiple granularity
■ Concept hierarchy formation: Recursively reduce the data by collecting
and replacing low level concepts (such as numeric values for age) by
higher level concepts (such as youth, adult, or senior)
■ Concept hierarchies can be explicitly specified by domain experts
and/or data warehouse designers
■ Concept hierarchy can be automatically formed for both numeric and
nominal data. For numeric data, use discretization methods shown.
52
Concept Hierarchy Generation
for Nominal Data
■ Specification of a partial/total ordering of attributes
explicitly at the schema level by users or experts
■ street < city < state < country
■ Specification of a hierarchy for a set of values by explicit
data grouping
■ {Urbana, Champaign, Chicago} < Illinois
53
Automatic Concept Hierarchy Generation
■ Some hierarchies can be automatically generated based on
the analysis of the number of distinct values per attribute in
the data set
■ The attribute with the most distinct values is placed at
the lowest level of the hierarchy
■ Exceptions, e.g., weekday, month, quarter, year
■ Data Reduction
■ Data Transformation and Data Discretization
■ Summary
55
Summary
■ Data quality: accuracy, completeness, consistency, timeliness,
believability, interpretability
■ Data cleaning: e.g. missing/noisy values, outliers
■ Data integration from multiple sources:
■ Entity identification problem
■ Remove redundancies
■ Detect inconsistencies
■ Data reduction
■ Dimensionality reduction
■ Numerosity reduction
■ Data compression
■ Data transformation and data discretization
■ Normalization
■ Concept hierarchy generation
56
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