BC1 Week3 4 5 Lipids
BC1 Week3 4 5 Lipids
Lipids
Outline
Functions
Sources
Classification
Structure
Properties
What are Lipids?
General Biochemistry 1 3
Functions
• Stored energy
– Fatty acids ~ same low oxidation state (highly
reduced) as hydrocarbon in fossil fuels
– The oxidation reaction of fatty acids are highly
exergonic
• Structural components of plasma membrane
• Enzyme cofactors, electron carriers,
pigment, anchor, chaperones, emulsifying
agent, hormones, intracellular messenger
General Biochemistry 1 4
Substrates of Catabolism
Contain Reduced Forms of Carbon
sterols
General Biochemistry 1 6
Classifications
1. Fatty Acids
2. Triacylglycerols
3. Waxes
4. Membrane lipids:
4a. Glycerophospholipids
4b. Galactolipids and Sulfolipids (plants)
4c. Tetraether lipids (archae bacteria)
4d. Sphingolipids
4e. Sterols (only eukaryotes) 7
1. Fatty acids
• Fatty acids = hydrocarbon chains
(C4 to C36) that end with -COOH
• Example:
General Biochemistry 1 9
The n-x nomenclature
• A.k.a ω-x or omega-x nomenclature
• Carbonyl carbon = α, next = β, etc.
• The terminal CH3 carbon is ω (or n)
• xth = position of the C=C counting from ω toward Cα
• Example:
– α-Linolenic acid 18:3(Δ9,12,15) = n-3 or ω-3 fatty acid
– Linoleic acid 18:2(Δ9,12) = n-6 or ω-6 fatty acids
– Oleic acid 18:1(Δ9) = n-9 or ω-9 fatty acids
10
Modified fatty acids found in nature
• Microorganism have branched fatty acids:
Tuberculostearic acid
(CH3 groups perturb
local structure similar
to double bonds)
• Some bacteria synthesize cyclic structures:
Cyclopropane, clyclopropene, cyclepentane
11
Essential Fatty Acids (EFAs)
General Biochemistry 1 12
Essential Fatty Acids (EFAs)
• Mammals lack ability to introduce C=C bond
beyond Δ9
• 2 EFAs: linoleic acids (ω-6) (LA),
α-linolenic acids (ω-3) (ALA)
• Precursor for eicosanoids
General Biochemistry 1 13
Conditionally essential fatty acids
• ω-3 fatty acids
– Docosahexaenoic acid (DHA) brain
– Eicosapentaenoic acid (EPA)
• ω-6 fatty acids
– γ-Linoleic acid (GLA)
– Arachidonic acids (AA) not found in plants,
can be synthesized in mammals only from LA
brain
– Dihomo-gamma-linolenic acid (DGLA)
General Biochemistry 1 14
Conditionally essential fatty acids
In preterm Infant
LA AA & ALA DHA is limited
but present in breast milk
added to infant milk formula
15
Essential Fatty Acids in the Media
General Biochemistry 1 16
Food Sources of essential fatty acids
• Good sources of ω-3 and ω-6: fish, shellfish,
flaxseed, hemp seed, olive oil, soya oil, canola
oil, chia seed, pumpkin, sunflower, leafy
vegetable, walnuts
• Fish: ω-3 (EPA, DHA)
• Vegetarian diet must consume supplements or
algea products
General Biochemistry 1 17
Best source of EFAs
General Biochemistry 1 18
General Chemical Properties
of Fatty acids
• Usually have even number of C & unbranched
(C12-C24)
• Mono-unsaturated fatty acid has 1 double bond,
usually at C9=C10 except Arachidonic acid
• Poly-unsaturated fatty acid has ≥2 double bonds,
usually C12 and C15
• Double bonds are usually separated by –CH2-
group
General Biochemistry 1 19
Common fatty acids
up to 20 carbons long
Saturated fatty acids
– Lauric acid (12 C)
– Myristic acid (14 C)
– Palmitic acid (16 C)
– Stearic acid (18 C)
– Arachidic acid (20 C)
Common fatty acids
up to 20 carbons long
Unsaturated fatty acids
– Palmitoleic acid (16:1)
– Oleic acid (18:1)
– Linoleic acid (18:2)
– α-Linolenic acid (18:3)
– γ-Linolenic acid (18:3)
– Arachidonic acid (20:4)
A little trick
• Ends in “ic” = no double bond, saturated
General Biochemistry 1 22
Olive Oil Varieties
Koroneiki olives from
Greece contain 74.4%
oleic acid.
Chemlali olives from
Tunisia contain only
54.9% oleic acid.
Conditions of growth &
maturation of the fruit
affect composition.
General Biochemistry 1 24
Cis- and Trans- fatty acids
• Almost all naturally occurring unsaturated fatty
acid are in cis configuration
• Trans-fatty acid = result of
– fermentation in rumen of dairy animals (dairy
products and meat)
– hydrogenation of fish or vegetable oils.
• High trans-fatty acid in diet LDL (bad
cholesterol) and HDL (good cholesterol)
General Biochemistry 1 25
French fries, donuts and cookies
high in trans-fatty acid!!!
General Biochemistry 1 26
LDL – bad cholesterol
• Human use receptor-mediated
endocytosis to take in cholesterol
• Cholesterol travels in blood in complex
with protein
• Low density lipoproteins (LDLs) in blood
binds to receptors on plasma membranes
and enter cells by endocytosis.
General Biochemistry 1 27
LDL particle endocytosis
General Biochemistry 1 28
LDL and HDL
• In hypercholesterolemia, the LDL
receptors are missing LDL cannot enter
cells but circulate and accumulate in blood
atherosclerosis (build up of lipid deposit
on walls of blood vessels)
bad cholesterol
• HDL (high density liproprotein) seem to
protect from artery clogging
good cholesterol
General Biochemistry 1 29
Physical properties of fatty acids
General Biochemistry 1 30
Solubility
• Nonpolar hydrocarbon chains
poor solubility in H2O
– Lauric acid (12:0, Mr 200) – 0.063 mg/g
– Glucose (Mr 180) 1,100 mg/g
• The longer the hydrocarbon chain
the fewer the double bonds
the lower the solubility
• Short fatty acid is slightly soluble because
of -COOH group General Biochemistry 1 31
Melting points
• Saturated fatty acid tightly pack together
in linear conformation with val de waals
interactions high melting point
• Unsaturated fatty acid has a kink (cis
configuration C=C bond) cannot pack
tightly together
lower melting points than saturated
fatty acid of same length
General Biochemistry 1 32
Saturated vs. Unsaturated
Fatty Acids
General Biochemistry 1 33
Fatty acids can be esterified
• Fatty acids are typically esterified at COOH
to esters or amides
even less soluble than regular fatty acids
• Un-esterified fatty acids are non-covalently
bound to protein carriers
General Biochemistry 1 34
2. Triacylglycerols
• Simplest lipids = 3 fatty acids ester linked 1 glycerol
Fatty acid of Glycerols
• Other names: triglycerides, fats or neutral fats
General Biochemistry 1 35
Simple triacylglycerols
• Simple triacylglycerols = all 3 fatty acids
are the same
• Example:
General Biochemistry 1 37
Triacylglycerols – sources
• In Eukaryote cells: stored in oily droplets
within cytosol
• In plants: stored in seeds
• In vertebrate animals: stored in adipocytes
(fat cells with large amounts of fat droplets)
• In human: stored in fat tissue of adipocytes
under skin, abdominal cavity, mamary glands
• Lipase = enzyme hydrolyzes triacylglycerols
release fuels General Biochemistry 1 38
Energy storage in triacylglycerols
over polysaccharides
1. Carbon atoms are more reduced
> 2x energy as carbohydrates
2. 1 g of Carbohydrates has 2 grams of H2O
heavier than anhydrated fats
Example:
– A moderately obese person stores 15-20 kg of
triacylglycerol enough energy for months.
– Glycogen enough energy for 1 day. quick
source of energy
Triacylglycerols can be
insulation and buoyance
General Biochemistry 1 40
Polar Bears Prefer Nonpolar Food
Sperm Whales use fats
as buoyance
• Sperm whales use storage of fats in their
heads as buoyancy
• The head = 1/3 of body weight,
90% of head is spermaceti oil (3600 kg)
= mixture of triacylglycerols and waxes of
balance of saturated/unsaturated and
necessary chain length
liquid at 37oC but crystalize at 31oC
General Biochemistry 1 42
Sperm Whales use fats
as buoyance
General Biochemistry 1 45
Saturated vs. Unsaturated Fat Diet
• High saturated fat diet
high risk of cardiovascular diseases
(heart attacks and strokes)
General Biochemistry 1 46
Saturated vs. Unsaturated Fat for Frying
Unsaturated fats are thermal oxidized
shorter chain
doi: 10.1111/j.1750-3841.2007.00352.x
47
Saturated vs. Unsaturated Fat for Frying
• Palm oil contains more saturated fats
withstand high heat & is resistant to oxidation
• Coconut oil high in lauric and myristic acids
(both saturated) & very few unsaturated fatty acids
suitable for frying
• Olive oil contains high level of monounsaturated
fats (~73%)
should not be used for frying
(with temperature ≥ 230oC)
48
Spoiled fats - Rancidfication
Oxidation of double bonds
aldehydes and carboxylic acids of shorter length
more volatile
rancid (old and stale) smell
49
Saponification
• Acylglycerol (mono-, di-, tri-) can be
hydrolyzed by heating with acid or base
• Alkaline hydrolysis of triacylglycerols
= saponification
• Soap = Metal salt of an acid derived from fats
Divalent ions (Mg2+ and Ca2+) in hard H2O ppt
with RCOO- detergent
50
3. Waxes
• Waxes = esters of long-chain saturated
(C14-C36) and unsaturated fatty acids with long
chain alcohols (C16-C30)
• Melting point ~ 60- 100oC
51
Waxes – Sources and Functions
• Plankton (free-floating microorganism):
main storage of energy
• Birds: use wax from preen glands to keep
feather water repellent
• Many tropical plant leaves
(holly, Rhododendrons, poison ivy)
anti-evaporation of H2O and anti-parasite
• Lanolin (lamb’s wool), beeswax and
spermaceti oil lotions, ointments, polishes
General Biochemistry 1 52
4. Membrane lipids
(Amphipathic)
From Amphiphile = Amphis (both) + Philia (love)
General Biochemistry 1 53
Membrane Lipids
4a. Glycerophospholipids
4d. Sphingolipids
4e. Sterols
General Biochemistry 1 54
Lipids form bilayer
plasma membranes
General Biochemistry 1 55
Lipids form bilayer
plasma membranes
General Biochemistry 1 56
Lipids form bilayer
plasma membranes
General Biochemistry 1 57
4a. Glycerophospholipids
Glycerophospholipids
• 2 fatty acids attached to C1 and C2 of Glycerol
by ester linkage.
• A highly polar group (head group) is attached
through phosphodiester linkage to the 3rd
Carbon.
58
Common Glycerophospholipids
General Biochemistry 1 59
The sn-Numbering System
Prio-3 Prio-2
Prio-4
Prio-1
General Biochemistry 1 62
Stereospecific numbering – sn system
• pro-S position of a pro-chiral atom = 1-position
• Pro-chiral atom = 2-position
• Sn means –OH group is on the left of Fischer P.
• Sn-1 = phosphate at top C, Sn-3 = phosphate bottom
Phosphoglycerides = sn-glycerol-3-phosphate
General Biochemistry 1 63
Naming of Glycerophospholipids
• Name = phosphatidyl + head group (X)
– Eg: phosphatidylcholine,
phosphatidylethanolamine
• Phosphate group = negatively charged
• Polar alcohol = Negative, neutral or positive
• 2 fatty acids can be of a wide variety
– C1 ~ saturated fatty acid C16-C18
– C2 ~ unsaturated fatty acid C18-C20
General Biochemistry 1 64
Phospholipids with
ether-linked fatty acids
• Ether lipids = glycerophospholipids with 1
of 2 acyl chains (saturated or unsaturated
Δ1 ) is attached to glycerol by ether linkage
• Example:
Plasmalogen (vertebrate heart tissue)
General Biochemistry 1 65
4b. Galactolipids and sulfolipids
• Found in thylakoid
membranes of Chloroplast,
make up of 70-80% of total
membrane lipids of vascular
plant most abundant
membrane lipid on Earth
• 1 or 2 galactose residues
are O-glycosidic linked to
1,2-diacylglycerol
• Plants probably replace
sugar and sulfonated sugar
for phosphate as it is scarce
in soil
General Biochemistry 1 66
4c. Archaebacteria tetraether lipids
• Glycerol dialkyl glycerol tetraethers
(GDGTs) = 32 carbon branched
hydrocarbons linked at each end to glycerol
• Ether linkage (-O-) instead of ester linkage
(-O-CO-)
• C* is in R configuration instead of S like other
kingdom
General Biochemistry 1 67
4d. Sphingolipids
• Does NOT contain glycerol
• Contains
– Sphingosine or its derivatives
– 1 long chain fatty acid = amide
– 1 polar head group linked by glycosidic
linkage or phosphodiester linkage
General Biochemistry 1 68
Classification of Sphingolipids
• Ceramide = fatty acid is amide linked to NH2 on
C2 = structural parent of all sphingolipids
• Sphingolipids = derivatives of Ceramides
• 3 subclasses:
– Sphingomyelins
– Glycosphingolipids (cereboside and globoside)
– Gangliosides
General Biochemistry 1 69
Some sphingolipid head groups
General Biochemistry 1 70
Sphingomyelins
• Sphingomyelins = ceramide + phosphocholine or
phosphoethanolamine
• Sphingomyelins in plasma membrane, myelin of
axons of neurons
• Sphingomyelins resembles phosphatidylcholines
3D structure and general properties
General Biochemistry 1 71
Similarity with Phosphatidylcholine
General Biochemistry 1 72
Classification of Lipids
sterols
General Biochemistry 1 73
Glycosphingolipids
• Glycosphingolipids’ head groups = ≥1 sugars
connected directly to –OH at C1 of ceramide
• Cerebroside = 1 sugar linked to ceramide.
If sugar = galactose in neural tissue plasma
membrane, glucose in non-neural tissue plama
membrane
• Globoside = has ≥2 sugars (D-glucose, D-
galactose, N-acetyl-D-galactosamine)
• Cereboside and globosides = neutral glycolipids
General Biochemistry 1 74
Glycosphingolipids
General Biochemistry 1 75
Gangliosides
• Gangliosides’ head groups = oligosaccharides
AND ≥1 N-acetylneuraminic acid (Neu5Ac or
sialic acid)
• Sialic acid = a glucuronic acid COO- at C6,
pyruvate at C1 and N-acetylamine at C2
• GM (M= mono), GD, GT, GQ has 1, 2, 3, 4 sialic
acid residues respectively
General Biochemistry 1 76
Sphingolipids at Cell Surfaces
are sites of biological recognition
• Sphingolipid's biological role at the point of
discovery was as mysterious as the Sphinx.
General Biochemistry 1 77
Gangliosides – determinant
of human blood types
General Biochemistry 1 78
Lysosomes
Phospholipids and Sphingolipids are
degraded in lysosomes
General Biochemistry 1 79
Abnormal accumulation
of membrane lipids
80
Terpenes and their biological relevance
Terpenes are a class of lipids formed from
combinations of isoprene units
• “Isoprene” is 2-methyl-1,3-butadiene
(natural rubber = poly-cis-isoprenes)
• Monoterpenes consist of 2 isoprene units
• Sesquiterpenes consist of 3 isoprenes
• A diterpene consists of 4 isoprene units
• All steroids (including cholesterol and the steroid
hormones) are terpene-based molecules
Terpenes and their biological relevance
Note the two possible linkage modes:
•“head-to-tail”
•“tail-to-tail”
The triterpene
lanosterol is a
constituent of
wool fat and is
also a precursor
to cholesterol and
the other steroids.
Lycopene is a
carotenoid found
in ripe fruit,
especially
tomatoes.
4e. Sterols
• Steroids are polyprenyl (isoprene-based)
• Sterols = steroid nucleus + a hydroxyl
group + nonpolar hydrocarbon side chain
• Steroid nucleus = 3 six carbon rings + 1
five carbon ring fused together
planar and relatively rigid
General Biochemistry 1 86
4e. Sterols
• O at C3 (OH = sterols)
• CH3 group at C10 or C13
• Alkyl (8-10 C) at C17
• C at C10,13 and alkyl on the same side of
the nucleus β-orientation
• Opposite = α
General Biochemistry 1 87
Cholesterol
• Cholesterol = 1 steroid nucleus + OH at
C3 and 16 Carbon alkyl side chain at C17
• Cholesterol is most common animal
steroid and precursor for all other animal
steroids
General Biochemistry 1 88
Cholesterol and bile acid
General Biochemistry 1 89
Sterols functions
• Examples of sterols: Cholesterol, stigmasterol
(plants), ergosterol (fungi)
• Sterols serve as:
– membrane constituents
– Precursor to steroid hormones
– Emulsifying detergent (bile acid)
• Only eukaryotes synthesize sterols, bacteria
cannot, but some incorporate them to their
membranes General Biochemistry 1 90
Lipids form bilayer plasma membranes
General Biochemistry 1 91
Membrane structures
• Saturated fatty acids can form ordered,
rigid arrays
• Unsaturated fatty acids form flexible,
fluid aggregates
General Biochemistry 1 92
Vitamin D3 is made from sterols
General Biochemistry 1 93
Lipids as Signals, cofactors
& pigments
General Biochemistry 1 94
Lipids as Signals, cofactors and pigments
• Pigment: vitamin A, D, E, K
General Biochemistry 1 95
Phosphatidylinositols:
intracellular signal
• Phosphatidylinositols is phosphorylated to
Phosphatidylinositol 4,5-bisphosphate (PIP2)
in the inner face of plasma membrane
• It can
– Binding site for cytoskeletal proteins
– Proteins involved in exocytosis
– Mediator of signals from intracellular
messenger to outer membranes
General Biochemistry 1 96
Phosphatidylinositol pathway
1. Remove the phospholipid
head group: phospholipase C
hydrolyzes the bond between
glycerol and PIP2 2
products
3. Products 2: diacylglycerol +
Ca2+ flux activates protein
kinase C
General Biochemistry 1 97
Inositol phospholipids:
points of nucleation
Proteins with PH and PX domains bind
phosphatidylinositols initiate formation of
multienzyme complexes
When glucose
level in blood is
high pancreas
secrets insulin
98
Phosphatidylinositols:
intracellular signal
• Ceramide and Sphingomyelin are potent
regulators of protein kinases, cell division,
differentiation, migration, apoptosis
• Sphingosine can be phosphorylated
sphingosine-1-phosphate (S1P) inside cells.
• S1P may either exert a variety of intracellular
effects or may be excreted from the cell, where it
can bind to membrane receptor proteins, either
on adjacent cells or on the cell from which it
was released.
General Biochemistry 1 99
Sphingolipids can be modified or broken
down to produce chemical signals
Sphingolipids can be modified or
broken down to produce chemical signals
Figure 8.20
Eicosanoids
Eicosanoids = paracrine hormones,
derivatives of arachidonic acid
(20:4(Δ5,8,11,14)) (“eikosi” = twenty)
102
3 classes of Eicosanoids
Prostaglandins (PG) = 5 carbon ring
cyclized from arachidonic acid (prostate
glands) regulates sysntheis of cAMP, wide
range of regulation, contract smooth muscle,
affect blood flow, produce fever,
inflammation and pain, responsiveness to
hormones
103
3 classes of Eicosanoids
Thromboxanes = 6 member ring (inclg
ether) (platelets) formation of blood clots
and ↓ blood flow to blood clots.
106
Eicosanoids
107
Steroid Hormones
• Steroids = oxidized derivatives of sterols, has
sterol nucleus but lacks alkyl chain
more polar
• Steroid hormones travel through blood, binds to
specific receptor and changes gene expression
and metabolism
• Major groups:
– sex hormones: testosterone, estradiol,
– Hormones produced by adrenal cortex:
cortisol, aldosterone 108
Some steroid hormones
Serum cholesterol
before and after
consumption of
Benecol.
Green circles: 0 g/day
Red squares: 2.6 g/day
Blue triangles: 1.8 g/day
Summary
Functions
Sources
Classification
Structure
Properties