#

# This file is autogenerated by pip-compile with Python 3.9

# by the following command:
#
# pip-compile requirements-dev.in
#
-e file:.
# via -r requirements-dev.in
absl-py==1.3.0
# via
# tensorboard
# tensorflow
adjusttext==0.8
# via
# -c requirements.txt
# jamie
anndata==0.9.1
# via
# -c requirements.txt
# jamie
# scanpy
astunparse==1.6.3
# via tensorflow
brokenaxes==0.5.0
# via
# -c requirements.txt
# jamie
cachetools==5.2.0
# via google-auth
certifi==2023.5.7
# via
# -c requirements.txt
# requests
charset-normalizer==3.2.0
# via
# -c requirements.txt
# requests
click==8.0.1
# via pip-tools
cloudpickle==2.2.0
# via shap
colorama==0.4.6
# via
# -c requirements.txt
# click
# tqdm
contourpy==1.1.0
# via
# -c requirements.txt
# matplotlib
cycler==0.11.0
# via
# -c requirements.txt
# matplotlib
et-xmlfile==1.1.0
# via openpyxl
filelock==3.12.2
# via
# -c requirements.txt
 # torch
flatbuffers==22.9.24
# via tensorflow
fonttools==4.41.0
# via
# -c requirements.txt
# matplotlib
gast==0.4.0
# via tensorflow
google-auth==2.12.0
# via
# google-auth-oauthlib
# tensorboard
google-auth-oauthlib==0.4.6
# via tensorboard
google-pasta==0.2.0
# via tensorflow
grpcio==1.49.1
# via
# tensorboard
# tensorflow
h5py==3.9.0
# via
# -c requirements.txt
# anndata
# scanpy
# tensorflow
idna==3.4
# via
# -c requirements.txt
# requests
importlib-metadata==5.0.0
# via markdown
importlib-resources==6.0.0
# via
# -c requirements.txt
# matplotlib
jinja2==3.1.2
# via
# -c requirements.txt
# torch
joblib==1.3.1
# via
# -c requirements.txt
# pynndescent
# scanpy
# scikit-learn
keras==2.10.0
# via tensorflow
keras-preprocessing==1.1.2
# via tensorflow
kiwisolver==1.4.4
# via
# -c requirements.txt
# matplotlib
libclang==14.0.6
# via tensorflow
llvmlite==0.40.1
# via
 # -c requirements.txt
# numba
# pynndescent
markdown==3.4.1
# via tensorboard
markupsafe==2.1.3
# via
# -c requirements.txt
# jinja2
# werkzeug
matplotlib==3.7.2
# via
# -c requirements.txt
# adjusttext
# brokenaxes
# jamie
# mmd-wrapper
# scanpy
# seaborn
mmd-wrapper @ git+https://[email protected]/Oafish1/[email protected]
# via jamie
mpmath==1.3.0
# via
# -c requirements.txt
# sympy
natsort==8.4.0
# via
# -c requirements.txt
# anndata
# scanpy
networkx==3.1
# via
# -c requirements.txt
# scanpy
# torch
numba==0.57.1
# via
# -c requirements.txt
# pynndescent
# scanpy
# shap
# umap-learn
numpy==1.24.4
# via
# -c requirements.txt
# adjusttext
# anndata
# contourpy
# h5py
# jamie
# keras-preprocessing
# matplotlib
# numba
# opt-einsum
# pandas
# patsy
# scanpy
# scikit-learn
# scikit-learn-extra
 # scipy
# seaborn
# shap
# statsmodels
# tensorboard
# tensorflow
# torchvision
# umap-learn
oauthlib==3.2.1
# via requests-oauthlib
openpyxl==3.0.10
# via jamie
opt-einsum==3.3.0
# via tensorflow
packaging==23.1
# via
# -c requirements.txt
# anndata
# matplotlib
# scanpy
# shap
# statsmodels
# tensorflow
pandas==2.0.3
# via
# -c requirements.txt
# anndata
# jamie
# scanpy
# seaborn
# shap
# statsmodels
patsy==0.5.3
# via
# -c requirements.txt
# scanpy
# statsmodels
pep517==0.11.0
# via pip-tools
pillow==10.0.0
# via
# -c requirements.txt
# matplotlib
# torchvision
pip-tools==6.3.0
# via jamie
protobuf==3.19.6
# via
# tensorboard
# tensorflow
pyasn1==0.4.8
# via
# pyasn1-modules
# rsa
pyasn1-modules==0.2.8
# via google-auth
pynndescent==0.5.8
# via
# -c requirements.txt
 # jamie
# umap-learn
pyparsing==3.0.9
# via
# -c requirements.txt
# matplotlib
python-dateutil==2.8.2
# via
# -c requirements.txt
# matplotlib
# pandas
pytz==2023.3
# via
# -c requirements.txt
# pandas
requests==2.31.0
# via
# -c requirements.txt
# requests-oauthlib
# tensorboard
# torchvision
requests-oauthlib==1.3.1
# via google-auth-oauthlib
rsa==4.9
# via google-auth
scanpy==1.9.3
# via
# -c requirements.txt
# jamie
scikit-learn==1.3.0
# via
# -c requirements.txt
# jamie
# mmd-wrapper
# pynndescent
# scanpy
# scikit-learn-extra
# shap
# umap-learn
scikit-learn-extra==0.3.0
# via
# -c requirements.txt
# jamie
scipy==1.11.1
# via
# -c requirements.txt
# anndata
# jamie
# mmd-wrapper
# pynndescent
# scanpy
# scikit-learn
# scikit-learn-extra
# shap
# statsmodels
# umap-learn
seaborn==0.12.2
# via
# -c requirements.txt
 # jamie
# scanpy
session-info==1.0.0
# via
# -c requirements.txt
# scanpy
shap==0.41.0
# via jamie
six==1.16.0
# via
# -c requirements.txt
# astunparse
# google-auth
# google-pasta
# grpcio
# keras-preprocessing
# patsy
# python-dateutil
# tensorflow
slicer==0.0.7
# via shap
statsmodels==0.14.0
# via
# -c requirements.txt
# scanpy
stdlib-list==0.9.0
# via
# -c requirements.txt
# session-info
sympy==1.12
# via
# -c requirements.txt
# torch
tensorboard==2.10.1
# via tensorflow
tensorboard-data-server==0.6.1
# via tensorboard
tensorboard-plugin-wit==1.8.1
# via tensorboard
tensorflow==2.10.0
# via mmd-wrapper
tensorflow-estimator==2.10.0
# via tensorflow
tensorflow-io-gcs-filesystem==0.27.0
# via tensorflow
termcolor==2.0.1
# via tensorflow
threadpoolctl==3.2.0
# via
# -c requirements.txt
# scikit-learn
tomli==1.2.1
# via pep517
torch==2.0.1
# via
# -c requirements.txt
# jamie
# mmd-wrapper
# torchvision
torchvision==0.15.2
# via
# -c requirements.txt
# jamie
# mmd-wrapper
tqdm==4.65.0
# via
# -c requirements.txt
# scanpy
# shap
# umap-learn
typing-extensions==4.7.1
# via
# -c requirements.txt
# tensorflow
# torch
tzdata==2023.3
# via
# -c requirements.txt
# pandas
umap-learn==0.5.3
# via
# -c requirements.txt
# jamie
# mmd-wrapper
# scanpy
unioncom==0.4.0
# via
# -c requirements.txt
# jamie
# mmd-wrapper
urllib3==2.0.4
# via
# -c requirements.txt
# requests
werkzeug==2.2.2
# via tensorboard
wheel==0.41.1
# via
# astunparse
# pip-tools
# tensorboard
wrapt==1.14.1
# via tensorflow
zipp==3.16.2
# via
# -c requirements.txt
# importlib-metadata
# importlib-resources

# The following packages are considered to be unsafe in a requirements file:

# pip
# setuptools