Labdex Real Time PCR LX150RTP Manual
Labdex Real Time PCR LX150RTP Manual
LX150RTP
www.labdex.com | [email protected]
Index
1. Safety measure 2
2. Introduction 6
3. Features 6
4. Specifications 7
5. Installation 9
6. Operation 12
7. Maintenance 92
8. Replacement 93
9. Troubleshooting 94
1
Safety measures
2
Protective Conductor This symbol is affixed next to a protective
Terminal conductor terminal on the instrument.
3
The transport package contains fragile
Fragile, handle with care components, need to be handled with
care.
1. To avoid electric shock, the input power cord for the instrument must be
properly grounded. The instrument uses a three-prong grounded plug with a
third (ground) pin that can only be used with a grounded power socket.
2. Operators are not allowed to disassemble the instrument. Replacing
components or adjusting certain parameters inside the machine must be
accomplished by the certified maintenance professionals
3. Before switching on the power, always check if the voltage of the power
supply matches the required power (100-240V~, 50/60Hz), and make
sure that the rating load of the power socket is not less than that of the
instrument 750W.
4. This instrument should normally be used with the supplied power cord.
If the power cord is damaged, it must bereplaced and cannot be repaired
5. When the power cord is inserted or pulled, be sure to hold the plug with
your hand in the correct position. While inserting, ensure the plug fully
and firmly inserted into the socket. While disconnecting the power cord,
do NOT pull the line but the plug out from the socket
6. The instrument must be installed in a place, where the power supply is
easy to be cut off.
7. The instrument should be placed in a clean, tidy workbench or table
with little dust and a place far away from the water source, such as pool,
pipe, etc. The room ought to be well ventilated, having no corrosive gas
or interference of a strong magnetic field. The table for the instrument
must be stable with the horizontal top
8. Do not place your hand nearby when the tray is in motion to avoid a
harm.
4
9. The instrument can be interconnected with computers, USB memory,
and USB scanners through the USB interface and network port
5
Introduction
Features
1. It has 96-well high-throughput
2. Microprocessor control system with 10.1-inch large touch screen for
precise response and convenient operation
3. High sensitivity PMT (photomultiplier tube) detection
4. Sample tray automatically moves in/out, enabling integration with
automated workstations/plate handlers
5. Built-in software and PC software with flexible program settings
6. Preset templates + "Quick Run” starts experiment immediately
6
Specifications
Model LX150RTP
7
Dimension (W x L x H) 320 x 530 x 420 mm
Net weight 27 kgs
Gross weight 60 kg
Applications
8
Installation
A. Wire connection
Figure.1
i. As shown in the figure below, before using the instrument, connect the power
cord to the socket and turn ON power supply
ii. Power cord connection: The power cord attached to the instrument should be
used. When connecting, the power switch of the instrument should be turned
OFF after connecting, check the tightness of the power cord and the power
socket ofthe instrument. If it is loose, please replace it.
iii. Network cable connection: The network cable attached to the instrument
should be used. After connecting, check the tightness of the network
cable and the instrument network cable port. If it is loose, please replace
it.
iv. USB port: For external connection of USB devices
v. Code scanner: Before using the instrument, connect the code scanner with the
data line, and then insert it into the USB interface of the computer
9
Figure.2
4
35
Figure.3
10
No. Description
LCD screen: fixed on the front top of the instrument. The user can touch
1
the screen for a series
of operations.
USB port: to connect to external USB driver, when connected, it can
2 performance the functions
like data import, export or software upgrade.
Standby button: When the instrument is powered on, press the button to
3
open/close the
instrument
Tray: It can be opened/closed by instrument terminal or PC terminal
software for placing/taking out samples.
4 The tray must not be blocked when it is opened and closed.
Do not block the tray with the hands when opening/closing, as this
may cause accidental injury.
11
Operation
C. Instrument startup
i. Press the power switch on the back of the instrument to the "I" position to
connect to the power
ii. Press the standby button on the front of the instrument to turn on the
instrument
iii. The LCD screen of the instrument lights up and it can enter the login interface.
Entre the username and password to log in to the instrument terminal
iv. When using the instrument for the first time, the user needs to set the
initial password of the admin account through the instrument terminal in
the instrument and log in, then it can be used. When it is not used for the
first time, it can be used directly online through the PC, and it does not
need to login the instrument terminal.
Figure.4
i. Whether all test tubes and 96-well plates in the block of the instrument have
been removed
ii. Whether the inside of the hole in the instrument module has been cleaned
iii. Whether the tray is completely closed
12
E. Instrument shutdown
i. Press the standby button on the front of the instrument to turn OFF the
instrument
ii. Press the power switch on the back of the instrument to the " O " position
to disconnect the power supply
iii. If contaminants are spilled on the instrument, wipe it with 75% ethanol by a
soft cloth
a. User login
i. Before firstly using the instrument, the initial password of the administrator
account must be set through the instrument software (that is, the initial
password must be confirmed and login on the instrument terminal, so it can
be used online in the PC terminal for the first time, and then the subsequent
functions like creating a new user and deleting a user of the instrument can
only be performed on the PC terminal)
Figure.5
13
• Routine login (Instrument only)
If the instrument is not used for the first time, after it is powered on, enter the
user login interface, click the "User Login", and enter any user name and
password under the instrument for login
Figure.6
If you forget the password when logging in to the administrator account, click
the "Forget password" to generate an "Request code". The user can apply to
get an authorization code from the after-sales personnel to reset the
password of the administrator account
Figure.7
After login, the user enters the main interface of instrument terminal
software, which includes
o User Logout
o Template Library
o Import
14
o Quick run
o Real-time graphics
o Experiment library
o Settings
Figure.8
Instrument terminal cannot only run a experiment directly, but also import,
export and view file, or set the system.
If it is not used for the first time and the instrument has been connected
through PC there is no need to log in the instrument terminal and only the
viewing the experiment state function is effective. In the online mode, the
instrument terminal automatically jumps to the online interface of
experiment
15
Figure.9
If the experiment is running in the online mode, click the button on the home
page to view the current experiment state
Figure.10
16
Figure.11
Click the home button to enter the experiment status interface. The user
manually stops the offline experiment or when the offline experiment is
completed, the interface will jump to the user login (stand-alone mode
Figure.12
After reconnecting to the PC, the user can view the running experiments or
instrument experiment files to view the experiments that were running before
the disconnection
b. Run an experiment
o Via the template: Template → Click any template file → Plate settings →
Open module → Place samples → Close module → Next → Method
settings → Gain settings → Start run
17
o Via the quick run: Quick run → Template selection → Open module →
Place samples → Close module → (Plate settings → Next → Method
settings →) Start run
• Plate settings
After selecting the template, jump to the plate settings, which can set
the experiment name, target, sample, and select the plate
Figure.13
ii. Select the plate: the required hole in the plate can be directly selected
through the plate layout or well table on the right.
iii. Clear selection: the selected plate hole can be quickly cleared by clicking the
"Clear selection" button in the upper right corner
iv. Experiment Name: the creation time is the default name, or click to manually
edit the name
• Sample: it can add or delete the sample information. After selecting the well
18
location of the plate, click the check box next to the sample ID to add the
sample to the plate
Figure.14
Click the "Add" button to add sample information. The sample ID can be added
by manual or by external code scanner
Figure.15
Select a certain sample information and click the “Delete” to delete this
sample information. If the sample information has been selected on the plate,
the system will pop up to prompt you before deleting
Figure.16
Switch between Plate and Table: you can switch the display of well plate
through plate or table
19
Figure.17
• Plate information save as : After setting the plate, click the "Save As" to save
the information settings as a new template file
Figure.18
• Sample preparation
After setting the plate information, click the icon on the upper right of the
plate setting to open the module, and place the samples into the module
according to the configured plate layout. Click the icon again to close the
module.
• Experiment setup
Click the "Next" of plate setting interface to jump to the experiment setup
interface:
20
Figure.19
Click the "Previous" to return to the plate setting interface to reconfirm. The
experiment setup interface can set the specific running program, select run
mode, set the hot lid temperature and liquid quantity, and also can save the
file as a template file
(1) Method View: Add add step, delete stage, delete step and set the
temperature & time of each program stage.
o Add Stage: click to select a holding stage, cycle stage, melting stage or
infinite stage.
Figure.20
o Add Step: click to add a step before or after the current step
21
Figure.21
Figure.22
22
Figure.23
Melting Parameters: the melting parameters can be set in the last stage of
melting
Figure.24
Settings of cycle number: click the cycle number box of the cycle stage to
manually edit the cycle number.
23
i. Run Mode: Block or Tube temperature control mode can be selected
ii. Hot-lid Temp: if the function of hot lid temperature is enabled, the
heating temperature of hot lid can be set, ranging from 35 °C to 105 °C
iii. Liquid Quantity: set the liquid volume, and the default is 20 μl
iv. List View: switch to the list mode to view the running program.
Figure.25
v. Save As: click the "Save As" to save the setting information as a new
template file
• Start run
Click the "Start Run" to jump to the Run Confirm interface, where to select
the gain mode and setting the gain value
Figure.26
24
After the gain setting is completed, click the "Run", the system will prompt
"please check whether the sample is loaded." Again
Figure.27
If no sample is placed, click the "Cancel" button to return to the Run Confirm
interface, click the icon on the interface to open the module, and place
the sample into the tray according to the plate layout. Then click the icon
again to close the module
If you confirm that the samples are placed into the block, click the "OK" to the
experiment begins and it will enter the real-time graphics interface
Figure.28
F. User logout
Click the “User logout” and confirm to exit the current user interface
25
Figure.29
It cannot logout the current user when the experiment is running, a dialog box
will prompt to pause the experiment, or log out after the experiment is done
Figure.30
• Template library
i. It can review all template files (When using for the first time, the
administrator account has 4 types of experiments by default. Each type of
experiment can be set as an initial template, which can be saved as a new
template after setting the preset template, or import the template file with
the same user name on PC into the Instrument terminal), open, search,
select, export or delete a file
ii. Click any template file to open the template file and enter the plate setting
interface
iii. Template files under the instrument can be searched and viewed through
template name,time review, experiment type and user name (only the
administrator account can view all the files of all users in the instrument,
while ordinary user can only view the files under his own name)
26
Figure.31
Click Import, it can import the template file from the same user name
through the external USB drive
Figure.32
27
Figure.33
• Import
It can import the template files under the same user name into the
Instrument terminal software through the external USB driver
Figure.34
• Quick run
Click the "Quick Run" to select the preset template (the template file settings
and gain settings
28
Figure.35
Click Real-Time Graphics. If the program is not running, click the "Real-Time
Graphics" and a pop-up prompt will appear
Figure.36
29
Figure.37
If there is an error warning during the running, the interface will pop up
a warning box, and the user can decide to stop or continue running
according to the warning content:
Figure.38
After the running continues, the user can click the "View" next to the error
log to check all error logs
30
Figure.39
Figure.40
H. Experiment library
i. Review all experiment files under the user name, and search, view, select
or export the file.
ii. The experiment files in this instrument can be searched and viewed
by the experiment name, finish time, experiment status, experiment
type and user name (only the administrator account can view all the
files with different user names in the instrument, common user can
only view the files under their own user name):
Figure.41
31
Figure.42
Or click the "View Run Parameter" button at below to switch to view the
experimental running parameters
Figure.43
The experiment files that are selected in the checkbox can be exported as
CSV files or directly as .epf format experiment files. The user can also click
"Export Encrypted CSV" to encrypt and protect the files that need to be
exported, or delete the selected experiment files
32
Figure.44
The password needs to be set by yourself. After setting the password, click
"Export"
Figure.45
I. Settings
• Basic settings
33
Figure.46
After selecting "Open" at the lock screen function, you can set the lock screen
time
Figure.47
After the instrument locks the screen, you need to enter the login password
and unlock:
34
Figure.48
If the user did not click “Save” after modifying the parameters, it will exit the
setting interface directly, but the systemwill pop up a prompt box to ask the user
whether save the modified parameters or not
Figure.49
J. Network settings
By performing network settings, the user can view the IP address of the
Ethernet connection
35
Figure.50
K. Quick run settings
It can set template files and gain setting parameters for quick run
Figure.51
There has up to 5 preset quick run templates, and one of them can be set as
the default template. For each template, it can be selected as the template file
to run one experiment
36
Figure.52
Figure.53
Common user system setting interface (no option of error log review
37
Figure.54
• About
About includes instrument software version and it’s release version, the
instrument model and serial number
Fiugre.55
38
PC software installation and login
L. Software installation
1) Hardware requirements
2) Software requirements
3) Installation method
Double-click the setup file → select the target folder → select the start
menu folder → select additional tasks → prepare the installation
confirmation interface → installing → complete
39
Figure.56
40
Figure.57
• User login
Double-click the icon on the desktop to start the software. The software
automatically initializes the configuration and detects the software operating
environment. After the startup is completed, it enters the user login interface
of the Real-Time Fluorescent Quantitative PCR System
Figure.58
41
Figure.59
a) When the PC software is used for the first time, if it is not detected
that the instrument is connected, a pop-up window will prompt
"Instrument not connected!".
2) Regular login
After the initial login, multiple user names can be set on the PC side
(up to 20, see 7.4.1 introduction for specific operations), and
subsequent logins can be logged in with the administrator or common
user name and password
42
Figure.60
After logging in, enter the main interface of the Real-Time Fluorescent
Quantitative PCR System, the main interface include:
o The top menu bar contains 8 main function buttons, including File, User,
Instrument, Analysis, Tool, Report, Database and Help
o The function keys below the menu contain 5 buttons: New, Open, Save,
Close and Open Module;
o The shortcut keys on the main interface contains 4 buttons: Open template,
Quick run, New experiment and Open experiment
o The status bar at the bottom displays the connection status, instrument
serial No., and currently logged-in user name, and the module status is also
displayed in the online status
o The main interface and experiment interface can be switched in the form
of option bars in the interfaceoption bar switching area
Figure.61
43
• Experiment interface operation
Figure.62
Figure.63
• Properties settings
44
Figure.64
Figure.65
Figure.66
Block scan method: According to the sample situation in the experiment, it can
choose scan all lines or scan specified lines. For scan specified lines, it can
select any required line or multiple lines in A-H to scan (select at least one
line to scan
Figure.67
• Target settings
Figure.68
i. Click "Add " to add targets one by one (the default is target 1, and the
maximum is 100).
ii. For each target, click the "Target Name" to edit, click the drop-down
45
"Reporter" to select the dye used in thisexperiment (the default is FAM, there
has total 13 fluorescent dyes for option), click "Color “to choose different
colors (up to 48 colors for option), double-click the "comment" to edit the
contents; the Endogenous Control check box can be selected according to
the needs of the experiment (only for the relative quantitative PCR
experiment use)
Figure.69
iii. Click "Save to Library" to add the selected target (the selected target bar
turns pink) to the detection target library. The name of the added detection
target cannot be the same as the name of the existing detection target in
the library
iv. Click "Import from Library" to directly import the existing targets in the
inspection target library. The imported inspection target name cannot be
the same as the added inspection target name
v. Click "Delete" to delete the selected target in the list
vi. Click "Clear All" to delete all targets added this time
vii. Click the drop-down box of "Passive Reference Dye" to select the reference
fluorescence of this experiment
viii. Click "Gain Settings" to pop up the interface, it can choose auto gain (500-
60000 can be set) or custom gain (1-20 can be set), and then choose
whether to use the default value, if not use the default value, manually enter
the parameters of each fluorescence channel
46
Figure.70
Figure.71
i. Click "Add " to add sample information one by one (add up to 96).
ii. For each sample, the corresponding information can be selected in the
"Sample Columns" in the toolbar. The color and sample No. are mandatory,
and the rest can be edited and filled here when selected
Figure.72
iii. The input of hospital sample ID and other information can also be
scanned and input by connecting a code scanner through the USB
interface
iv. Click "Batch add " to pop up the box for adding samples in batches, enter
47
the number of samples that need to be added, and click "Add" to quickly
add the corresponding number of samples
Figure.73
v. Click "Import " to import the sample information file in .xlsx format
vi. Click "Export " to export the sample information file in .xlsx format.
vii. Click "Delete" to delete the selected sample information.
viii. Click "Clear All" to clear all sample information added this time
• Plate settings
Figure.74
i. Click "Plate" or "Table", select the plate wells that needs to be set, and set
the target and sample information of these wells on the left
ii. Target setting: select 6 different concentration units according to the
drop-down box (or not selected); check the concentration box, 4 different
attributes can be selected from the attribute drop-down box, after setting
the corresponding plate, the attribute identifier and target name will
appear on the screen (the table will record the set target information); up
to 6 different targets can be set for the same well
iii. Sample information setting: it can be marked by the check box on the
right side of the sample name. After checking, the corresponding sample
name will appear in the plate, and the background color will change to the
48
color corresponding to the sample (The table will record the set sample
information).
iv. After setting the plate information, select the three drop-down boxes of
"Sample", "Target", and "Property" after "Select Wells" at the top right to
view the corresponding wells
v. In the plate interface: click the magnifying glass symbol on the upper
right to enlarge the plate layout; click the shrink symbol to reduce the
plate layout; click the restore symbol to restore the layout to its original
state
vi. In the plate interface: by right-clicking, it can clear the settings of the wells
(clear the target settings, clear the sample settings or clear all settings),
copy and paste operations
• Method settings
Figure.75
i. Hot-lid Temp: check the checkbox to set the heating temperature of the
hot lid, the setting range is 35°C-105°C
ii. Liquid Quantity: set the sample dosing volume
iii. Add Stage: The user can create a new Holding stage, cycle stage, melting
stage or Infinite stage through the drop-down box (directly click the Add
Stage to create a new cycle stage by default)
iv. Add Step: the user can add a step before or after the selected step
through the drop-down box, (directly click “Add step” to add a new step
after the selected step by default, each stage can be set up to 20 steps)
v. Delete: delete the chosen stage or step
vi. Parameter setting of holding stage, cycle stage, melting stage or infinite
stage. In each stage, the user can set the ramp rate, target temp., step
hold time, and sampling fluorescence or not. In addition, the cycle stage
can additionally set the extension parameters of each step (extension
temp., extension time, grad temp., and extension start cycle). the melting
stage can additionally set the melting parameters of the last step of the
melting step (melting step temp., melting step hold time)
49
Figure.76
• Sample preparation
After setting programs and before running, please make sure that the
reaction samples are ready
- Make sure to use appropriate consumables
- Make sure that the arrangement of the PCR reaction plate is consistent with
settings of the above plate. When ready, click "Open Module" button in the
function keys below the menu bar, then place the samples according to the
plate layout, insert into the module tray, and then click "Close Module
• Start to run
i. Start to run: After the preparation, make sure that the PC is connected and
the instrument is idle without abnormal alarms, then click Run. On the
right side of the "Run Status" box, click the "Start Run" button to start
running the experiment. The experiment in running is marked with a green
circle
Figure.77
50
iii. Running status: After the experiment starts, the “Run Status” box will
display the experiment starting time, the experiment complete time, the
“Run Status” (including 5 states of not run, running, failure, stop by user
and run completed), Remaining time, Currently running segment, Cycle,
Step, Hot lid temperature, Target temperature, Actual temperature,
Gradient temperature
Figure.78
iv. After running, the user can perform "Skip current stage" or "Stop". During
the running of cycle stage, the user can operate "Cycle +1" to add one cycle
or "Cycle -1" to delete one cycle
v. Fluorescence curve: the fluorescence intensity will change with cycles. The
curve will appear after at least one cycle finished. The well can be selected
on the right side. On the left side, the user can set the targets for view and
the curve color of the selected well (all displayed by default). the mouse is
placed between curve frame and the hole position frame, the user can
adjust the display range. the mouse is placed on the curve interface, and the
curve coordinates can be zoomed by scrolling the mouse. click on the curve
to perform settings of the graph as "Save image", "Copy to clipboard", "Print"
and " Fix size
vi. Temperature curve: the temperature changes with the experimental
time, and it appears after the running. scroll the mouse to zoom in and
out of the curve coordinates. click on the curve to perform settings of
the graph, as "Save image", "Copy to clipboard", "Print" and " Fix size".
vii. Melting curve (it has no melting curve if no melting stage is set in the
running program): the fluorescence intensity changes with the
temperature and appears after completing a melting. scroll the mouse
to zoom in and out of the curve coordinates. click on the curve to
perform settings of the graph, as "Save image", "Copy to clipboard",
"Print" and " Fix size".
viii. Method: user can view the specific program of this running experiment, but
can't modify it.
N. Analysis
After the running is completed, the analysis bar will automatically appear
in the experiment interface, including display option buttons for different
result curves, such as amplification curve, standard curve, melting curve, etc
51
viewing function
Standard curve and Check the standard curve, specific parameters and
standard analysis result analysis results according to the test target. The user
viewing function can also view the imported standard curve
information, and the user can also export the
standard curve or save the standard curve to the
standard curve
library.
Melting curve and The user can view the melting curve and melting
result of each test
melting analysis result
target in each reaction well, as well as the
viewing function fluorescence curve and derivative curve.
Relative quantitative The user can view the relative quantitative graph and
graph and relative the relative quantitative analysis results.
quantitative analysis
result viewing function
SNP chart and SNP The user can choose to view the SNP map and SNP
analysis result analysis results
viewing function according to the test targets.
HRM curve and HRM The user can view fluorescence curve, derivative
analysisresult viewing curve, normalization curve and difference graph.
function
• Analysis
"Analyze" and "Analysis Setting" buttons will appear at the upper right of
each curve result interface. Click the "Analyze" button to analyze the
experimental results (according to the default parameter settings).
Figure.79
• Analysis setting
i. If the user needs to adjust the analysis parameters and re-analyze, click
the "Analysis Setting" button to set different analysis parameters, and
then click "Apply Analysis Settings" to analyze according to the newly set
parameters
ii. For the amplification curve, there has Ct analysis parameter settings and
the advanced parameter settings
- Ct analysis parameter settings: Select the stage to use for Ct
52
analysis→Select the algorithm to calculate Ct→Select whether to
use s-shaped curve fitting→Set thresholds for each target, Start
cycle and End cycle
Figure.80
The advanced parameter settings: Auto Baseline, Start Cycle and End
Cycle are set for each target at each well
Figure.81
53
The standard curve parameters can be set in the standard curve
settings: The standard curve acquisition method is set, and it
will use the standard curve from this experiment by default (the
standard curve is available only when the test target contains at
least 2 standard products with different concentrations;
otherwise, the target has no standard curve); If the standard curve
imported from external is selected, targets, imported standard
curve file and standard curve used need to be set
- External import standard curve setting: Click the target in an experiment,
click "External Import", the selection box of standard curve file will pop up
(only the standard curve stored by the current user willbe displayed, and all
standard curves will be displayed when the administrator logs in)→Select
the filethat meets the standard file format and click "OK" → drop down to
select the detection target in the imported standard curve
- If the generated sampling number of the imported standard curve is
inconsistent with the current sampling number, the statement " Sampling
count of imported standard curve is not match to current experiment” The
prompt
- If the generated sampling temperature of the standard curve is
inconsistent with the current sampling temperature, the statement "
Import failed: sampling Temp. not match. ” The prompt
- If the content of the imported standard curve file cannot be analyzed, the
statement " Cannot find valid standard curves.” The prompt
Figure.82
54
to enable advanced fitting and set the Min. Tm, Max. Tm Width, and
Min. Tm Width for each target
Figure.83
vi. It can set the parameters of relative quantitative analysis in the relative
quantitative analysis settings: Choose the Analysis Method of
Relative Quantification→Select Reference Sample( One, which can
be selected from the Settings sample, or null, which is null by default
)→Set Endogenous Control (all targets can be selected, not selected
by default ) →Select the relative quantitative confidence interval
algorithm and set the algorithm parameters (The Confidence Level is
given as a percentage. Optional 95.0%, 97.0%, 99.0%, 99.5%, 99.7%,
99.9%; Multiple of Standard Deviations can be 1, 2 or 3)
55
Figure.84
In the SNP settings, it can set the parameters of SNP analysis: Drop
- down to select SNP analysisdata→Check whether each target keep
manual calls
Figure.85
In HRM settings, it can perform the settings of HRM curves: Set Pre-
56
Melting Start Temp., Pre-Melting End Temp., Post-Melting Start Temp. and
Post-Melting End Temp. for each target
Figure.86
O. Report
After the running is completed, the report column will automatically appear in
the experiment interface, including the Print and QC Summary tabs
i. Only when the experiment is absolute quantification or SNP, and the status
of experiment file is completed, the report can be viewed and printed
ii. The interface on the right side of the printed report displays the judgment
result corresponding to each sample and its target. When viewing the report
for printing, the analysis results of each target in each well are arranged by
default according to the well number
Figure.87
iii. Report Template: drop down the selection box to select the report template
to be printed, and the report will be printed in the form of a print report
template
57
Figure.89
iv. Print Settings: Click this button to pop up the print settings dialog box,
enter the content required in the report template
Figure.90
58
Figure.91
vi. All: select all information targets in the list for printing, and the tick box in
front of all information targets are automatically selected
vii. Cancel Selection: Click this button, all the selected information targets in
the list will be canceled
viii. Information targets tick: the user can print each target of each sample.
All can be ticked or canceledautomatically, or manually ticked or
canceled individually
ix. Print Preview: Click to pop up the print preview dialog box for reviewing
x. Print Settings: Click to pop up the Windows print setting interface. After
setting parameters, such as the number of copies, click to print the report
in the form of the report template
• QC summary
In the quality control summary interface, the user can view the amplification
curve, the user can select the well to viewthe corresponding curve of the
well, and the user can also select the Curve Color, Gragh Type, and
displayed fluorescence channel of the Amplification Curve. The user can
view the results of QC information (displaying the unknown samples and
standards of the specific non-amplified).
59
Figure.92
i. Curve Color: drop-down box to select and set the curve color
ii. Graph Type: drop-down box to set the amplification curve style.
iii. QC Summary bar: If the QC information is ticked to be used here, it will
display the wells that meet to the rules in the result bar on the below
iv. QC summary result bar: it displays the wells that meet to the selected QC
information rules, and the format is displayed as "test target 1: well 1, well
2, .... test target 2: well 1, well 2,.
v. Display the amplification curve: After selecting the well, the
corresponding curves will be displayed
vi. QC information results: display the unknown samples and standards of
the specific non-amplified.
P. New
o New experiment
- In the main interface, directly click the shortcut key of "New Experiment
60
Figure.93
File→ New→ New from template, the "Select Template" box will pop up
Figure.94
Select and open any template file in the Template Library, the system will
automatically generate a new experiment file (default named as current time),
and then turn to an experiment interface which saves the setting data in the
template, and the user can directly run the experiment according to the
settings in the template
Click the drop-down box of "New " in the function keys at the bottom of the
menu
Figure.95
61
• Open (Experiment file)
Figure.96
This interface displays the list of all experiment files, the user can sort,
search, open and close the experiment files. the specific operations are as
follows
1) Sort: click the head of the list to sort the experiment files
2) Search
i. Search drop-down box: click the drop-down box of the Search Option, and
the user can select the experiment name, Experiment File Template
Creation Time, Recent Open Time, Experiment Status, Experiment Type,
User Name (only the administrator account can view all files of all users
in this instrument, ordinary users can only view the files of their own user
name) to search for experimental files. When searching, up to 4 search
targets, and the selected search targets cannot be selected again
Figure.97
62
Figure.98
ii.Search: click this button to search the experimental file library with the set
search conditions
iii. Clear. click this button to clear all the contents in the search options
3) Open: Select an experiment in the experiment file list, and then click this
button to open the selected experiment
4) Close: click to close the " Select Experiment File " interface.
To open the experiment file bars, the user can also
Directly click the shortcut key "Open experiment" on the main interface:
(2) Search:
i. Search drop-down box: Click the drop-down box of the search option,
and the user can search for template files by the Template
Name,Template Creation Time, Recent Open Time, User Name (only the
administrator account can view all files of all users in this instrument,
ordinary users can only view the files of their own user name).
63
Figure.99
i. Search: click to search the template file library with the set search
conditions.
ii. Clear. click to clear all the contents in the search options
(3) Open: select an experiment in the template file list, and then click this
button to open the selected template file, and automatically create a new
experiment every time the user can open one file (default named as
current time), and turn to the experiment interface. For specific operations
of experiment interface
(4) Close: click to close the "Select Template" interface
(5) Click the drop-down box of "Open" in the function keys below the menu
(6) Directly click the shortcut key "Open template" on the main interface:
Figure.100
64
Figure.101
• Export Excel
Figure.102
• Save
If the user opens an experiment file and modify it, click “Save” to save the
modified information to the original experiment file
65
If the user opens a template file and modify it, click “Save” to save this file as
an experiment file, and a prompt box will pop up, and the user need to enter
a new experiment file name
Figure.103
In the experiment interface: File → Save As → Enter the experiment file name
(default named as creating time) → save as an experiment file
Click the drop-down box of "Save" in the function key area below the menu
Figure.104
Click the drop-down box of "Save" in the function key area below the menu
66
Figure.105
• Exit
If there is still an experimental interface that has not been closed, it will
prompt
Figure.106
• User management
67
Figure 107
Common users can only view their own information and modify their own
passwords; administrators can view all user information under the instrument
but can only modify its own passwords. At the same time, the administrator
account also has the authority to create a new user, edit users and delete
users
Figure.108
(3) Edit: to edit a user, it can reset the existing user password and unlock or
lock the user status. The reset user password is unified as: 888888
68
Figure.108
(4) Delete: deleting user information will delete the user name and all templates
under this user name in this machine
Figure.109
69
current operation (close the relevant pop-up box) and prompt "
Administrator authentication failed, operation failed!"
• User login
User→ User Login→ Enter the login interface: select the instrument serial
number, user name, and password→ click Login→ Enter the new user
interface
Figure.110
• Connect
It can set the automatic connection or manual connection, and the priority of
connection between the USB port or network port
Figure.111
After the connection is successful, the status bar becomes: Connected. At this
70
time, according to the controllable state of the instrument, it can be divided
into two online states
• Disconnect
Figure.112
• Instrument information
When the instrument is connected, you can view the information of the
currently online instrument, including basic instrument information and
instrument abnormal information:
71
Figure.113
• Alarm
View and change the settings of the current instrument alarm sound
Figure.114
72
Figure.115
The user can search by experiment name, experiment status, experiment type and
user name. After searching, select the required file, and then import the selected
experiment file from the instrument to the PC
Figure.116
• Quick run
In the controllable state of the online instrument, and the template file has
been stored in the template library (the plate information has been set), you
can quickly create an experiment and start the run through the “Quick run”
button.
The "Quick Run" under the instrument in the top menu has the same function
as the shortcut key "Quick Run" on the main interface. Click to jump to the
"Quick Run" interface, where you can edit the basic information of the
experiment and click to import the template
73
Figure.117
Figure.118
74
Figure.119
Figure.120
75
Figure.121
S. Calibration
• Calibration instrument
The user can view the calibration status data, gain values and other
information of the online instruments.
Figure.122
• Baseline calibration
76
will be output
- Only administrator can have this function.
- This function can be selected only when the online instrument is in idle state,
and the calibration experiment cannot be resumed if power failure and
recovered.
- If the calibration procedure is not completed normally, the current calibration
will be invalid and the calibration data will not be saved
• Crosstalk calibration
77
T. Menu bar function description: Analysis
• Analysis
• Analysis settings
The user can view the local IP of the instrument, add the IP of the instrument,
and communicate when the two are on the same network end
Figure.123
After automatic lock is enabled, you can set the automatic lock waiting time
78
Figure.124
If you do not perform any operation within the specified time, the PC will
be automatically locked and you need to re-enter the current user
password to unlock the PC
Figure.125
• Scan method
Select the module scan method of “Scan All Lines” or “Scan Specified
Lines” (it can select any required line or multiple lines in A-H to scan, by
default all lines A-H are selected and scanned)
79
Figure.126
• Run mode
• Sample columns
It can tick the required sample columns, among which "Sample No." and
"Color" are mandatory by default
Figure.127
Select to confirm again the key information before running the experiment
file. Before running, several ticked targets will be judged. If the information is
not complete, the experiment cannot be started
80
Figure.128
• Target library
Create, edit, delete and clear the targets files of four kinds of experiments:
"Absolute ", "Relative ", "SNP" and "HRM”
Figure.129
(1) Sort: Click the header of the list to sort the corresponding tests
Figure.130
(2) Search: search by Creation Time, Target, Reporter and Modify Time
81
Figure.131
Figure.132
(4) Edit: Edit the selected target
Figure.133
(5) Delete: delete the selected target (multiple targets can be deleted at the
same time)
Figure.134
(6) Clear: Delete all target
82
Figure.135
The default print report for absolute and SNP type experiments can be
selected, and the report format can be previewed
• Print template
It can set the manual editing items for printing report template of the absolute
and SNP type experiment, and select the printing paper and printer
Figure.136
83
• Default negative judgment
Figure.137
• Report template library
Management of the report template library. It displays the list all report
templates, and can create a new template, edit the existing template, import
a template, export the template and delete templates
Figure.138
(1) New: for absolute quantification and SNP only, it can create a new absolute
84
or SNP report from the drop-down box
Figure.139
85
Figure.140
(1) Edit: to edit the selected report template, the interface is the same as
“New”.
(2) Import : import report template file from outside, the supported file format
is .rpt.exp
(3) Export: export the selected report template, and the exported file format is
.rpt.exp
(4) Delete: delete the selected report template.
• Consolidated report
Open the experiment file that has been run and click "Consolidated Report"
to view and print the consolidated report ofthe experimental results (the
report will take some time to generate, please wait patiently
Figure.141
(1) Generate report: The user can set the report items in the "Report Items" on
86
the right side. After resetting each time, click "Generate" to regenerate a
consolidated report again (the default report contains all report items
when entering):
Figure.142
(2) Print: it will use the computer's print settings to print the generated report
• Experiment library
The user can view experiment file library, and at the same time sort, search,
open, import, and export them
87
Figure.143
88
Figure.145
If the selected file(s) to be exported already exist(s) in the target directory, the
user can skip or overwrite
• Template library
The user can view template file library, and at the same time sort, search,
open, import, export and delete them
Figure.146
(5) Export: select one or use the shift + ctrl keys of the keyboard to select
89
multiple files, click “Export”, and select the target folder to export the data
Figure.147
If the selected file(s) to be exported already exist(s) in the target folder, the
user can skip or overwrite
Figure.148
Delete: delete the selected template file. The user needs to confirm again
before deleting
Figure.149
• Documentation
The user can consult the software and the operating manual matched with
90
the instrument. Before using the instrument, the novice can view the
operation process in the "Documentation". This process can help the user
quickly become familiar with the experimental operation
• About
The user can view information such as instrument model, serial number, PC
full version and PC release version
Figure.150
91
Maintenance
A. Instrument cleaning
If liquid or other contaminants enter the block well , please use a medical
cotton swab soaked in 75% ethanol and put it into the block well and gently
rotate it 5-10 times, cleaning 3 times each time.
B. Routine maintenance
92
Replacement
• When the fuse is damaged, the user can replace the fuse as follows
93
Troubleshooting
Alarm
Cause analysis Solution
signal/instrument
failure
Error01: In-out motor
Please contact the
abnormal. Please Instrument failure.
supplier or
contact after-sales
manufacturer.
personnel for overhaul.
Error02: Up-down
motor abnormal. Please contact the
Instrument failure. supplier or
Please contact
after-sales manufacturer.
personnel for
overhaul.
Error03: X axis motor
Please contact the
abnormal. Please Instrument failure.
supplier or
contact after-sales
manufacturer.
personnel for overhaul.
Error04: Y axis motor
Please contact the
abnormal. Please Instrument failure.
supplier or
contact after-sales
manufacturer.
personnel for overhaul.
Error05: Circular
channel motor Please contact the
Instrument failure.
abnormal. Please supplier or
contact manufacturer.
after-sales personnel for
overhaul.
1. Please contact the
1. Instrument failure.
supplier or manufacturer.
Error06: Fluorescence 2. Fluorescence signal is
2. Check whether the
detection abnormal. too low, no test tube or
plate placement is
empty tube may be
consistent with the
placed.
plate layout in the
program.
94
Error07: Module
temperature sensor Please contact the
Instrument failure. supplier or
short/open circuit.
Pleasecontact after- manufacturer.
sales personnel for
overhaul.
Error08: Module
heating function Please contact the
Instrument failure.
abnormal. Please supplier or
contact after-sales manufacturer.
personnel for overhaul.
Error09: Module
cooling function Please contact the
Instrument failure. supplier or
abnormal. Please
contact the after-sales manufacturer.
personnel
for overhaul.
Error10: Hot-lid
Please contact the
temperature sensor Instrument failure.
supplier or
short/open circuit.
manufacturer.
Please contact after-
sales personnel for
Error11: Hot-lid heating
function Abnormal.
Instrument failure. Please contact the
Please contact after-
sales personnel for supplier or
overhaul. manufacturer.
Error12: Radiator
temperature sensor
Instrument failure. Please contact the
short/open circuit.
Please contact after- supplier or
sales personnel for manufacturer.
overhaul.
Error13: The heat
dissipation function of
Instrument failure. Please contact the
the radiator is
abnormal. Please supplier or
contact after-sales manufacturer.
personnel for
overhaul.
95
Error14: |The module is The block is pulled out
Check the module
unplugged, and the during runtime.
status, relocate the
experimental
sample and restart
data is invalid.
the experiment
Error15: The firmware 1. The power is cut off 1. Power on and start
upgrade failed. Please 2. The PC is disconnected online again.
upgrade again! from the instrument 2. Reconnect.
terminal.
Error16: 1. Reconnect.
1. Communication data
Communication failure 2. Please contact the
error.
of Firmware! supplier or manufacturer.
2. Instrument failure.
Error17: Instrument Instrument on-line
Reconnect.
disconnected! disconnection.
96