Data Mining:

Concepts and Techniques

(3rd ed.)

— Chapter 1 —

Jiawei Han, Micheline Kamber, and Jian Pei

University of Illinois at Urbana-Champaign &
Simon Fraser University
©2011 Han, Kamber & Pei. All rights reserved.
1
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
2
 Why Data Mining?

 The Explosive Growth of Data: from terabytes to petabytes

 Data collection and data availability
 Automated data collection tools, database systems, Web,
computerized society
 Major sources of abundant data
 Business: Web, e-commerce, transactions, stocks, …
 Science: Remote sensing, bioinformatics, scientific simulation, …
 Society and everyone: news, digital cameras, YouTube
 We are drowning in data, but starving for knowledge!
 “Necessity is the mother of invention”—Data mining—Automated
analysis of massive data sets

3
 Evolution of Sciences
 Before 1600, empirical science
 1600-1950s, theoretical science
 Each discipline has grown a theoretical component. Theoretical models often
motivate experiments and generalize our understanding.
 1950s-1990s, computational science
 Over the last 50 years, most disciplines have grown a third, computational branch
(e.g. empirical, theoretical, and computational ecology, or physics, or linguistics.)
 Computational Science traditionally meant simulation. It grew out of our inability to
find closed-form solutions for complex mathematical models.
 1990-now, data science
 The flood of data from new scientific instruments and simulations
 The ability to economically store and manage petabytes of data online
 The Internet and computing Grid that makes all these archives universally accessible
 Scientific info. management, acquisition, organization, query, and visualization tasks
scale almost linearly with data volumes. Data mining is a major new challenge!
 Jim Gray and Alex Szalay, The World Wide Telescope: An Archetype for Online Science,
Comm. ACM, 45(11): 50-54, Nov. 2002

4
 Evolution of Database Technology
 1960s:
 Data collection, database creation, IMS and network DBMS
 1970s:
 Relational data model, relational DBMS implementation
 1980s:
 RDBMS, advanced data models (extended-relational, OO, deductive, etc.)
 Application-oriented DBMS (spatial, scientific, engineering, etc.)
 1990s:
 Data mining, data warehousing, multimedia databases, and Web
databases
 2000s
 Stream data management and mining
 Data mining and its applications
 Web technology (XML, data integration) and global information systems

5
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
6
 What Is Data Mining?

 Data mining (knowledge discovery from data)

 Extraction of interesting (non-trivial, implicit, previously
unknown and potentially useful) patterns or knowledge from
huge amount of data
 Data mining: a misnomer?
 Alternative names
 Knowledge discovery (mining) in databases (KDD), knowledge
extraction, data/pattern analysis, data archeology, data
dredging, information harvesting, business intelligence, etc.
 Watch out: Is everything “data mining”?
 Simple search and query processing
 (Deductive) expert systems

7
 Knowledge Discovery (KDD) Process
 This is a view from typical
database systems and data
Pattern Evaluation
warehousing communities
 Data mining plays an essential
role in the knowledge discovery
process Data Mining

Task-relevant Data

Data Warehouse Selection

Data Cleaning

Data Integration

Databases
8
 Example: A Web Mining Framework

 Web mining usually involves

 Data cleaning
 Data integration from multiple sources
 Warehousing the data
 Data cube construction
 Data selection for data mining
 Data mining
 Presentation of the mining results
 Patterns and knowledge to be used or stored into
knowledge-base

9
 Data Mining in Business Intelligence

Increasing potential
to support
business decisions End User
Decision
Making

Data Presentation Business

Analyst
Visualization Techniques
Data Mining Data
Information Discovery Analyst

Data Exploration
Statistical Summary, Querying, and Reporting

Data Preprocessing/Integration, Data Warehouses

DBA
Data Sources
Paper, Files, Web documents, Scientific experiments, Database Systems
10
Example: Mining vs. Data Exploration

 Business intelligence view

 Warehouse, data cube, reporting but not much mining
 Business objects vs. data mining tools
 Supply chain example: tools
 Data presentation
 Exploration

11
 KDD Process: A Typical View from ML and
Statistics

Input Data Data Pre- Data Post-

Processing Mining Processing

Data integration Pattern discovery Pattern evaluation

Normalization Association & correlation Pattern selection
Feature selection Classification Pattern interpretation
Clustering
Dimension reduction Pattern visualization
Outlier analysis
…………

 This is a view from typical machine learning and statistics communities

12
 Example: Medical Data Mining

 Health care & medical data mining – often

adopted such a view in statistics and machine
learning
 Preprocessing of the data (including feature
extraction and dimension reduction)
 Classification or/and clustering processes
 Post-processing for presentation

13
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
14
 Multi-Dimensional View of Data Mining
 Data to be mined
 Database data (extended-relational, object-oriented, heterogeneous,

legacy), data warehouse, transactional data, stream, spatiotemporal,

time-series, sequence, text and web, multi-media, graphs & social
and information networks
 Knowledge to be mined (or: Data mining functions)
 Characterization, discrimination, association, classification,

clustering, trend/deviation, outlier analysis, etc.

 Descriptive vs. predictive data mining

 Multiple/integrated functions and mining at multiple levels

 Techniques utilized
 Data-intensive, data warehouse (OLAP), machine learning, statistics,

pattern recognition, visualization, high-performance, etc.

 Applications adapted
 Retail, telecommunication, banking, fraud analysis, bio-data mining,

stock market analysis, text mining, Web mining, etc.

15
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
16
 Data Mining: On What Kinds of Data?
 Database-oriented data sets and applications
 Relational database, data warehouse, transactional database
 Advanced data sets and advanced applications
 Data streams and sensor data
 Time-series data, temporal data, sequence data (incl. bio-sequences)
 Structure data, graphs, social networks and multi-linked data
 Object-relational databases
 Heterogeneous databases and legacy databases
 Spatial data and spatiotemporal data
 Multimedia database
 Text databases
 The World-Wide Web

17
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
18
Data Mining Function: (1) Generalization

 Information integration and data warehouse construction

 Data cleaning, transformation, integration, and
multidimensional data model
 Data cube technology
 Scalable methods for computing (i.e., materializing)
multidimensional aggregates
 OLAP (online analytical processing)
 Multidimensional concept description: Characterization
and discrimination
 Generalize, summarize, and contrast data
characteristics, e.g., dry vs. wet region

19
Data Mining Function: (2) Association and
Correlation Analysis
 Frequent patterns (or frequent itemsets)
 What items are frequently purchased together in your
Walmart?
 Association, correlation vs. causality
 A typical association rule
 Diaper  Beer [0.5%, 75%] (support, confidence)
 Are strongly associated items also strongly correlated?
 How to mine such patterns and rules efficiently in large
datasets?
 How to use such patterns for classification, clustering,
and other applications?
20
Data Mining Function: (3) Classification

 Classification and label prediction

 Construct models (functions) based on some training examples
 Describe and distinguish classes or concepts for future prediction
 E.g., classify countries based on (climate), or classify cars
based on (gas mileage)
 Predict some unknown class labels
 Typical methods
 Decision trees, naïve Bayesian classification, support vector
machines, neural networks, rule-based classification, pattern-
based classification, logistic regression, …
 Typical applications:
 Credit card fraud detection, direct marketing, classifying stars,
diseases, web-pages, …

21
Data Mining Function: (4) Cluster Analysis

 Unsupervised learning (i.e., Class label is unknown)

 Group data to form new categories (i.e., clusters), e.g.,
cluster houses to find distribution patterns
 Principle: Maximizing intra-class similarity & minimizing
interclass similarity
 Many methods and applications

22
Data Mining Function: (5) Outlier Analysis
 Outlier analysis
 Outlier: A data object that does not comply with the general
behavior of the data
 Noise or exception? ― One person’s garbage could be another
person’s treasure
 Methods: by product of clustering or regression analysis, …
 Useful in fraud detection, rare events analysis

23
Time and Ordering: Sequential Pattern,
Trend and Evolution Analysis
 Sequence, trend and evolution analysis
 Trend, time-series, and deviation analysis: e.g.,

regression and value prediction

 Sequential pattern mining

 e.g., first buy digital camera, then buy large SD

memory cards
 Periodicity analysis

 Motifs and biological sequence analysis

 Approximate and consecutive motifs

 Similarity-based analysis

 Mining data streams

 Ordered, time-varying, potentially infinite, data streams

24
 Structure and Network Analysis

 Graph mining
 Finding frequent subgraphs (e.g., chemical compounds), trees

(XML), substructures (web fragments)

 Information network analysis
 Social networks: actors (objects, nodes) and relationships (edges)

 e.g., author networks in CS, terrorist networks

 Multiple heterogeneous networks

 A person could be multiple information networks: friends,

family, classmates, …
 Links carry a lot of semantic information: Link mining

 Web mining
 Web is a big information network: from PageRank to Google

 Analysis of Web information networks

 Web community discovery, opinion mining, usage mining, …

25
 Evaluation of Knowledge
 Are all mined knowledge interesting?
 One can mine tremendous amount of “patterns” and knowledge
 Some may fit only certain dimension space (time, location, …)
 Some may not be representative, may be transient, …
 Evaluation of mined knowledge → directly mine only
interesting knowledge?
 Descriptive vs. predictive
 Coverage
 Typicality vs. novelty
 Accuracy
 Timeliness
 …
26
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
27
Data Mining: Confluence of Multiple Disciplines

Machine Pattern Statistics

Learning Recognition

Applications Visualization
Data Mining

Algorithm Database High-Performance

Technology Computing

28
Why Confluence of Multiple Disciplines?

 Tremendous amount of data

 Algorithms must be highly scalable to handle such as tera-bytes of
data
 High-dimensionality of data
 Micro-array may have tens of thousands of dimensions
 High complexity of data
 Data streams and sensor data
 Time-series data, temporal data, sequence data
 Structure data, graphs, social networks and multi-linked data
 Heterogeneous databases and legacy databases
 Spatial, spatiotemporal, multimedia, text and Web data
 Software programs, scientific simulations
 New and sophisticated applications
29
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
30
 Applications of Data Mining
 Web page analysis: from web page classification, clustering to
PageRank & HITS algorithms
 Collaborative analysis & recommender systems
 Basket data analysis to targeted marketing
 Biological and medical data analysis: classification, cluster analysis
(microarray data analysis), biological sequence analysis, biological
network analysis
 Data mining and software engineering (e.g., IEEE Computer, Aug.
2009 issue)
 From major dedicated data mining systems/tools (e.g., SAS, MS SQL-
Server Analysis Manager, Oracle Data Mining Tools) to invisible data
mining

31
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
32
 Major Issues in Data Mining (1)

 Mining Methodology
 Mining various and new kinds of knowledge
 Mining knowledge in multi-dimensional space
 Data mining: An interdisciplinary effort
 Boosting the power of discovery in a networked environment
 Handling noise, uncertainty, and incompleteness of data
 Pattern evaluation and pattern- or constraint-guided mining
 User Interaction
 Interactive mining
 Incorporation of background knowledge
 Presentation and visualization of data mining results

33
 Major Issues in Data Mining (2)

 Efficiency and Scalability

 Efficiency and scalability of data mining algorithms
 Parallel, distributed, stream, and incremental mining methods
 Diversity of data types
 Handling complex types of data
 Mining dynamic, networked, and global data repositories
 Data mining and society
 Social impacts of data mining
 Privacy-preserving data mining
 Invisible data mining

34
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
35
 A Brief History of Data Mining Society

 1989 IJCAI Workshop on Knowledge Discovery in Databases

 Knowledge Discovery in Databases (G. Piatetsky-Shapiro and W. Frawley,
1991)
 1991-1994 Workshops on Knowledge Discovery in Databases
 Advances in Knowledge Discovery and Data Mining (U. Fayyad, G.
Piatetsky-Shapiro, P. Smyth, and R. Uthurusamy, 1996)
 1995-1998 International Conferences on Knowledge Discovery in Databases
and Data Mining (KDD’95-98)
 Journal of Data Mining and Knowledge Discovery (1997)
 ACM SIGKDD conferences since 1998 and SIGKDD Explorations
 More conferences on data mining
 PAKDD (1997), PKDD (1997), SIAM-Data Mining (2001), (IEEE) ICDM
(2001), etc.
 ACM Transactions on KDD starting in 2007
36
 Conferences and Journals on Data Mining

 KDD Conferences  Other related conferences

 ACM SIGKDD Int. Conf. on  DB conferences: ACM SIGMOD,
Knowledge Discovery in
VLDB, ICDE, EDBT, ICDT, …
Databases and Data Mining (KDD)
 Web and IR conferences: WWW,
 SIAM Data Mining Conf. (SDM)
SIGIR, WSDM
 (IEEE) Int. Conf. on Data Mining
(ICDM)  ML conferences: ICML, NIPS
 European Conf. on Machine  PR conferences: CVPR,
Learning and Principles and  Journals
practices of Knowledge Discovery
 Data Mining and Knowledge
and Data Mining (ECML-PKDD)
Discovery (DAMI or DMKD)
 Pacific-Asia Conf. on Knowledge
Discovery and Data Mining  IEEE Trans. On Knowledge and
(PAKDD) Data Eng. (TKDE)
 Int. Conf. on Web Search and  KDD Explorations
Data Mining (WSDM)  ACM Trans. on KDD

37
Where to Find References? DBLP, CiteSeer, Google

 Data mining and KDD (SIGKDD: CDROM)

 Conferences: ACM-SIGKDD, IEEE-ICDM, SIAM-DM, PKDD, PAKDD, etc.
 Journal: Data Mining and Knowledge Discovery, KDD Explorations, ACM TKDD
 Database systems (SIGMOD: ACM SIGMOD Anthology—CD ROM)
 Conferences: ACM-SIGMOD, ACM-PODS, VLDB, IEEE-ICDE, EDBT, ICDT, DASFAA
 Journals: IEEE-TKDE, ACM-TODS/TOIS, JIIS, J. ACM, VLDB J., Info. Sys., etc.
 AI & Machine Learning
 Conferences: Machine learning (ML), AAAI, IJCAI, COLT (Learning Theory), CVPR, NIPS, etc.
 Journals: Machine Learning, Artificial Intelligence, Knowledge and Information Systems,
IEEE-PAMI, etc.
 Web and IR
 Conferences: SIGIR, WWW, CIKM, etc.
 Journals: WWW: Internet and Web Information Systems,
 Statistics
 Conferences: Joint Stat. Meeting, etc.
 Journals: Annals of statistics, etc.
 Visualization
 Conference proceedings: CHI, ACM-SIGGraph, etc.
 Journals: IEEE Trans. visualization and computer graphics, etc.
38
 Chapter 1. Introduction
 Why Data Mining?

 What Is Data Mining?

 A Multi-Dimensional View of Data Mining

 What Kind of Data Can Be Mined?

 What Kinds of Patterns Can Be Mined?

 What Technology Are Used?

 What Kind of Applications Are Targeted?

 Major Issues in Data Mining

 A Brief History of Data Mining and Data Mining Society

 Summary
39
 Summary
 Data mining: Discovering interesting patterns and knowledge from
massive amount of data
 A natural evolution of database technology, in great demand, with
wide applications
 A KDD process includes data cleaning, data integration, data
selection, transformation, data mining, pattern evaluation, and
knowledge presentation
 Mining can be performed in a variety of data
 Data mining functionalities: characterization, discrimination,
association, classification, clustering, outlier and trend analysis, etc.
 Data mining technologies and applications
 Major issues in data mining

40
 Recommended Reference Books
 S. Chakrabarti. Mining the Web: Statistical Analysis of Hypertex and Semi-Structured Data. Morgan
Kaufmann, 2002
 R. O. Duda, P. E. Hart, and D. G. Stork, Pattern Classification, 2ed., Wiley-Interscience, 2000
 T. Dasu and T. Johnson. Exploratory Data Mining and Data Cleaning. John Wiley & Sons, 2003
 U. M. Fayyad, G. Piatetsky-Shapiro, P. Smyth, and R. Uthurusamy. Advances in Knowledge Discovery and
Data Mining. AAAI/MIT Press, 1996
 U. Fayyad, G. Grinstein, and A. Wierse, Information Visualization in Data Mining and Knowledge
Discovery, Morgan Kaufmann, 2001
 J. Han and M. Kamber. Data Mining: Concepts and Techniques. Morgan Kaufmann, 3rd ed., 2011
 D. J. Hand, H. Mannila, and P. Smyth, Principles of Data Mining, MIT Press, 2001
 T. Hastie, R. Tibshirani, and J. Friedman, The Elements of Statistical Learning: Data Mining, Inference,
and Prediction, 2nd ed., Springer-Verlag, 2009
 B. Liu, Web Data Mining, Springer 2006.
 T. M. Mitchell, Machine Learning, McGraw Hill, 1997
 G. Piatetsky-Shapiro and W. J. Frawley. Knowledge Discovery in Databases. AAAI/MIT Press, 1991
 P.-N. Tan, M. Steinbach and V. Kumar, Introduction to Data Mining, Wiley, 2005
 S. M. Weiss and N. Indurkhya, Predictive Data Mining, Morgan Kaufmann, 1998
 I. H. Witten and E. Frank, Data Mining: Practical Machine Learning Tools and Techniques with Java
Implementations, Morgan Kaufmann, 2nd ed. 2005

41
 Data Mining:
Concepts and Techniques

— Chapter 2 —

Jiawei Han, Micheline Kamber, and Jian Pei

University of Illinois at Urbana-Champaign
Simon Fraser University
©2011 Han, Kamber, and Pei. All rights reserved.
1
 Chapter 2: Getting to Know Your Data

 Data Objects and Attribute Types

 Basic Statistical Descriptions of Data

 Data Visualization

 Measuring Data Similarity and Dissimilarity

 Summary

2
 Types of Data Sets
 Record
 Relational records
 Data matrix, e.g., numerical matrix,

timeout

season
coach

game
score
team

ball

lost
pla

wi
n
y
crosstabs
 Document data: text documents: term-
frequency vector
Document 1 3 0 5 0 2 6 0 2 0 2
 Transaction data
 Graph and network Document 2 0 7 0 2 1 0 0 3 0 0

 World Wide Web Document 3 0 1 0 0 1 2 2 0 3 0

 Social or information networks
 Molecular Structures
 Ordered TID Items
 Video data: sequence of images 1 Bread, Coke, Milk
 Temporal data: time-series
2 Beer, Bread
 Sequential Data: transaction sequences
3 Beer, Coke, Diaper, Milk
 Genetic sequence data
 Spatial, image and multimedia: 4 Beer, Bread, Diaper, Milk
 Spatial data: maps 5 Coke, Diaper, Milk
 Image data:
 Video data:
3
Important Characteristics of Structured Data

 Dimensionality
 Curse of dimensionality
 Sparsity
 Only presence counts
 Resolution
 Patterns depend on the scale
 Distribution
 Centrality and dispersion

4
 Data Objects

 Data sets are made up of data objects.

 A data object represents an entity.
 Examples:
 sales database: customers, store items, sales
 medical database: patients, treatments
 university database: students, professors, courses
 Also called samples , examples, instances, data points,
objects, tuples.
 Data objects are described by attributes.
 Database rows -> data objects; columns ->attributes.
5
 Attributes

 Attribute (or dimensions, features, variables):

a data field, representing a characteristic or feature
of a data object.
 E.g., customer _ID, name, address
 Types:
 Nominal

 Binary

 Numeric: quantitative

 Interval-scaled

 Ratio-scaled

6
 Attribute Types
 Nominal: categories, states, or “names of things”
 Hair_color = {auburn, black, blond, brown, grey, red, white}
 marital status, occupation, ID numbers, zip codes
 Binary
 Nominal attribute with only 2 states (0 and 1)
 Symmetric binary: both outcomes equally important
 e.g., gender
 Asymmetric binary: outcomes not equally important.
 e.g., medical test (positive vs. negative)
 Convention: assign 1 to most important outcome (e.g., HIV
positive)
 Ordinal
 Values have a meaningful order (ranking) but magnitude between
successive values is not known.
 Size = {small, medium, large}, grades, army rankings

7
 Numeric Attribute Types
 Quantity (integer or real-valued)
 Interval
 Measured on a scale of equal-sized units
 Values have order
 E.g., temperature in C˚or F˚, calendar dates
 No true zero-point
 Ratio
 Inherent zero-point
 We can speak of values as being an order of
magnitude larger than the unit of measurement
(10 K˚ is twice as high as 5 K˚).
 e.g., temperature in Kelvin, length, counts,
monetary quantities
8
 Discrete vs. Continuous Attributes
 Discrete Attribute
 Has only a finite or countably infinite set of values

 E.g., zip codes, profession, or the set of words in a

collection of documents
 Sometimes, represented as integer variables

 Note: Binary attributes are a special case of discrete

attributes
 Continuous Attribute
 Has real numbers as attribute values

 E.g., temperature, height, or weight

 Practically, real values can only be measured and

represented using a finite number of digits
 Continuous attributes are typically represented as
floating-point variables
9
 Chapter 2: Getting to Know Your Data

 Data Objects and Attribute Types

 Basic Statistical Descriptions of Data

 Data Visualization

 Measuring Data Similarity and Dissimilarity

 Summary

10
 Basic Statistical Descriptions of Data
 Motivation
 To better understand the data: central tendency,
variation and spread
 Data dispersion characteristics
 median, max, min, quantiles, outliers, variance, etc.
 Numerical dimensions correspond to sorted intervals
 Data dispersion: analyzed with multiple granularities
of precision
 Boxplot or quantile analysis on sorted intervals
 Dispersion analysis on computed measures
 Folding measures into numerical dimensions
 Boxplot or quantile analysis on the transformed cube
11
 Measuring the Central Tendency
 Mean (algebraic measure) (sample vs. population): 1 n
x   xi   x
Note: n is sample size and N is population size. n i 1 N
n

w x
 Weighted arithmetic mean:
i i
 Trimmed mean: chopping extreme values x i 1
n
 Median: w
i 1
i

 Middle value if odd number of values, or average of

the middle two values otherwise
 Estimated by interpolation (for grouped data):
n / 2  ( freq)l
median  L1  ( ) width
 Mode freqmedian
 Value that occurs most frequently in the data
 Unimodal, bimodal, trimodal
 Empirical formula: mean  mode  3  (mean  median)
12
Symmetric vs. Skewed Data
 Median, mean and mode of symmetric
symmetric, positively and
negatively skewed data

positively skewed negatively skewed

April 14, 2022 Data Mining: Concepts and Techniques 13

 Measuring the Dispersion of Data
 Quartiles, outliers and boxplots
 Quartiles: Q1 (25th percentile), Q3 (75th percentile)
 Inter-quartile range: IQR = Q3 – Q1
 Five number summary: min, Q1, median, Q3, max
 Boxplot: ends of the box are the quartiles; median is marked; add
whiskers, and plot outliers individually
 Outlier: usually, a value higher/lower than 1.5 x IQR
 Variance and standard deviation (sample: s, population: σ)
 Variance: (algebraic, scalable computation)
1 n 1 n 2 1 n n n

 [ xi  ( xi ) 2 ]
1 1
s  ( xi  x )         xi   2
2 2 2 2 2
( x )
n  1 i 1 n  1 i 1 n i 1 N i 1
i
N i 1

 Standard deviation s (or σ) is the square root of variance s2 (or σ2)

14
 Boxplot Analysis

 Five-number summary of a distribution

 Minimum, Q1, Median, Q3, Maximum
 Boxplot
 Data is represented with a box
 The ends of the box are at the first and third
quartiles, i.e., the height of the box is IQR
 The median is marked by a line within the
box
 Whiskers: two lines outside the box extended
to Minimum and Maximum
 Outliers: points beyond a specified outlier
threshold, plotted individually

15
 Visualization of Data Dispersion: 3-D Boxplots

April 14, 2022 Data Mining: Concepts and Techniques 16

 Properties of Normal Distribution Curve

 The normal (distribution) curve

 From μ–σ to μ+σ: contains about 68% of the

measurements (μ: mean, σ: standard deviation)

 From μ–2σ to μ+2σ: contains about 95% of it
 From μ–3σ to μ+3σ: contains about 99.7% of it

17
Graphic Displays of Basic Statistical Descriptions

 Boxplot: graphic display of five-number summary

 Histogram: x-axis are values, y-axis repres. frequencies
 Quantile plot: each value xi is paired with fi indicating
that approximately 100 fi % of data are  xi
 Quantile-quantile (q-q) plot: graphs the quantiles of
one univariant distribution against the corresponding
quantiles of another
 Scatter plot: each pair of values is a pair of coordinates
and plotted as points in the plane

18
 Histogram Analysis
 Histogram: Graph display of
tabulated frequencies, shown as 40
bars 35
 It shows what proportion of cases 30
fall into each of several categories
25
 Differs from a bar chart in that it is
20
the area of the bar that denotes the
value, not the height as in bar 15
charts, a crucial distinction when the 10
categories are not of uniform width
5
 The categories are usually specified
0
as non-overlapping intervals of 10000 30000 50000 70000 90000
some variable. The categories (bars)
must be adjacent

19
Histograms Often Tell More than Boxplots

 The two histograms

shown in the left may
have the same boxplot
representation
 The same values
for: min, Q1,
median, Q3, max
 But they have rather
different data
distributions

20
 Quantile Plot
 Displays all of the data (allowing the user to assess both
the overall behavior and unusual occurrences)
 Plots quantile information
 For a data xi data sorted in increasing order, fi
indicates that approximately 100 fi% of the data are
below or equal to the value xi

Data Mining: Concepts and Techniques 21

 Quantile-Quantile (Q-Q) Plot
 Graphs the quantiles of one univariate distribution against the
corresponding quantiles of another
 View: Is there is a shift in going from one distribution to another?
 Example shows unit price of items sold at Branch 1 vs. Branch 2 for
each quantile. Unit prices of items sold at Branch 1 tend to be lower
than those at Branch 2.

22
 Scatter plot
 Provides a first look at bivariate data to see clusters of
points, outliers, etc
 Each pair of values is treated as a pair of coordinates and
plotted as points in the plane

23
Positively and Negatively Correlated Data

 The left half fragment is positively

correlated
 The right half is negative correlated

24
Uncorrelated Data

25
 Chapter 2: Getting to Know Your Data

 Data Objects and Attribute Types

 Basic Statistical Descriptions of Data

 Data Visualization

 Measuring Data Similarity and Dissimilarity

 Summary

26
 Data Visualization
 Why data visualization?
 Gain insight into an information space by mapping data onto graphical
primitives
 Provide qualitative overview of large data sets
 Search for patterns, trends, structure, irregularities, relationships among
data
 Help find interesting regions and suitable parameters for further
quantitative analysis
 Provide a visual proof of computer representations derived
 Categorization of visualization methods:
 Pixel-oriented visualization techniques
 Geometric projection visualization techniques
 Icon-based visualization techniques
 Hierarchical visualization techniques
 Visualizing complex data and relations
27
 Pixel-Oriented Visualization Techniques
 For a data set of m dimensions, create m windows on the screen, one
for each dimension
 The m dimension values of a record are mapped to m pixels at the
corresponding positions in the windows
 The colors of the pixels reflect the corresponding values

(a) Income (b) Credit Limit (c) transaction volume (d) age
28
 Laying Out Pixels in Circle Segments
 To save space and show the connections among multiple dimensions,
space filling is often done in a circle segment

(a) Representing a data record

(b) Laying out pixels in circle segment
in circle segment
29
Geometric Projection Visualization Techniques

 Visualization of geometric transformations and projections

of the data
 Methods
 Direct visualization
 Scatterplot and scatterplot matrices
 Landscapes
 Projection pursuit technique: Help users find meaningful
projections of multidimensional data
 Prosection views
 Hyperslice
 Parallel coordinates
30
Ribbons with Twists Based on Vorticity
Direct Data Visualization

Data Mining: Concepts and Techniques 31

 Scatterplot Matrices

Used by ermission of M. Ward, Worcester Polytechnic Institute

Matrix of scatterplots (x-y-diagrams) of the k-dim. data [total of (k2/2-k) scatterplots]

32
 Landscapes
Used by permission of B. Wright, Visible Decisions Inc.

news articles
visualized as
a landscape

 Visualization of the data as perspective landscape

 The data needs to be transformed into a (possibly artificial) 2D
spatial representation which preserves the characteristics of the data
33
 Parallel Coordinates
 n equidistant axes which are parallel to one of the screen axes and
correspond to the attributes
 The axes are scaled to the [minimum, maximum]: range of the
corresponding attribute
 Every data item corresponds to a polygonal line which intersects each
of the axes at the point which corresponds to the value for the
attribute

• • •

Attr. 1 Attr. 2 Attr. 3 Attr. k

34
Parallel Coordinates of a Data Set

35
 Icon-Based Visualization Techniques

 Visualization of the data values as features of icons

 Typical visualization methods
 Chernoff Faces
 Stick Figures
 General techniques
 Shape coding: Use shape to represent certain
information encoding
 Color icons: Use color icons to encode more information
 Tile bars: Use small icons to represent the relevant
feature vectors in document retrieval

36
 Chernoff Faces

 A way to display variables on a two-dimensional surface, e.g., let x be

eyebrow slant, y be eye size, z be nose length, etc.
 The figure shows faces produced using 10 characteristics--head
eccentricity, eye size, eye spacing, eye eccentricity, pupil size,
eyebrow slant, nose size, mouth shape, mouth size, and mouth
opening): Each assigned one of 10 possible values, generated using
Mathematica (S. Dickson)

 REFERENCE: Gonick, L. and Smith, W. The

Cartoon Guide to Statistics. New York:
Harper Perennial, p. 212, 1993
 Weisstein, Eric W. "Chernoff Face." From
MathWorld--A Wolfram Web Resource.
mathworld.wolfram.com/ChernoffFace.html

37
 Stick Figure
A census data
figure showing
age, income,
gender,
education, etc.

A 5-piece stick
figure (1 body
and 4 limbs w.
different
angle/length)
Two attributes mapped to axes, remaining attributes mapped to angle or length of limbs”. Look at texture pattern 38
 Hierarchical Visualization Techniques

 Visualization of the data using a hierarchical

partitioning into subspaces
 Methods
 Dimensional Stacking
 Worlds-within-Worlds
 Tree-Map
 Cone Trees
 InfoCube

39
 Dimensional Stacking

attribute 4
attribute 2

attribute 3

attribute 1

 Partitioning of the n-dimensional attribute space in 2-D

subspaces, which are ‘stacked’ into each other
 Partitioning of the attribute value ranges into classes. The
important attributes should be used on the outer levels.
 Adequate for data with ordinal attributes of low cardinality
 But, difficult to display more than nine dimensions
 Important to map dimensions appropriately
40
 Dimensional Stacking
Used by permission of M. Ward, Worcester Polytechnic Institute

Visualization of oil mining data with longitude and latitude mapped to the
outer x-, y-axes and ore grade and depth mapped to the inner x-, y-axes
41
 Worlds-within-Worlds
 Assign the function and two most important parameters to innermost
world
 Fix all other parameters at constant values - draw other (1 or 2 or 3
dimensional worlds choosing these as the axes)
 Software that uses this paradigm

 N–vision: Dynamic
interaction through data
glove and stereo
displays, including
rotation, scaling (inner)
and translation
(inner/outer)
 Auto Visual: Static
interaction by means of
queries
42
 Tree-Map
 Screen-filling method which uses a hierarchical partitioning
of the screen into regions depending on the attribute values
 The x- and y-dimension of the screen are partitioned
alternately according to the attribute values (classes)

MSR Netscan Image

Ack.: http://www.cs.umd.edu/hcil/treemap-history/all102001.jpg 43
Tree-Map of a File System (Schneiderman)

44
 InfoCube

 A 3-D visualization technique where hierarchical

information is displayed as nested semi-transparent
cubes
 The outermost cubes correspond to the top level
data, while the subnodes or the lower level data
are represented as smaller cubes inside the
outermost cubes, and so on

45
 Three-D Cone Trees
 3D cone tree visualization technique works
well for up to a thousand nodes or so
 First build a 2D circle tree that arranges its
nodes in concentric circles centered on the
root node
 Cannot avoid overlaps when projected to
2D
 G. Robertson, J. Mackinlay, S. Card. “Cone
Trees: Animated 3D Visualizations of
Hierarchical Information”, ACM SIGCHI'91
 Graph from Nadeau Software Consulting
website: Visualize a social network data set
that models the way an infection spreads
from one person to the next
Ack.: http://nadeausoftware.com/articles/visualization
46
 Visualizing Complex Data and Relations
 Visualizing non-numerical data: text and social networks
 Tag cloud: visualizing user-generated tags
 The importance of
tag is represented
by font size/color
 Besides text data,
there are also
methods to visualize
relationships, such as
visualizing social
networks

Newsmap: Google News Stories in 2005

 Chapter 2: Getting to Know Your Data

 Data Objects and Attribute Types

 Basic Statistical Descriptions of Data

 Data Visualization

 Measuring Data Similarity and Dissimilarity

 Summary

48
 Similarity and Dissimilarity
 Similarity
 Numerical measure of how alike two data objects are

 Value is higher when objects are more alike

 Often falls in the range [0,1]

 Dissimilarity (e.g., distance)

 Numerical measure of how different two data objects

are
 Lower when objects are more alike

 Minimum dissimilarity is often 0

 Upper limit varies

 Proximity refers to a similarity or dissimilarity

49
 Data Matrix and Dissimilarity Matrix
 Data matrix
 n data points with p  x11 ... x1f ... x1p 
 
dimensions  ... ... ... ... ... 
x ... x if ... x ip 
 Two modes
 i1 
 ... ... ... ... ... 
x ... x nf ... x np 
 n1 
 Dissimilarity matrix
 0 
 n data points, but
 d(2,1) 0 
registers only the  
 d(3,1) d ( 3,2) 0 
distance  
 A triangular matrix  : : : 
d ( n,1) d ( n,2) ... ... 0
 Single mode

50
 Proximity Measure for Nominal Attributes

 Can take 2 or more states, e.g., red, yellow, blue,

green (generalization of a binary attribute)
 Method 1: Simple matching
 m: # of matches, p: total # of variables
d (i, j)  p 
p
m

 Method 2: Use a large number of binary attributes

 creating a new binary attribute for each of the
M nominal states

51
 Proximity Measure for Binary Attributes
Object j
 A contingency table for binary data
Object i

 Distance measure for symmetric

binary variables:
 Distance measure for asymmetric
binary variables:
 Jaccard coefficient (similarity
measure for asymmetric binary
variables):
 Note: Jaccard coefficient is the same as “coherence”:

52
 Dissimilarity between Binary Variables
 Example
Name Gender Fever Cough Test-1 Test-2 Test-3 Test-4
Jack M Y N P N N N
Mary F Y N P N P N
Jim M Y P N N N N

 Gender is a symmetric attribute

 The remaining attributes are asymmetric binary
 Let the values Y and P be 1, and the value N 0
01
d ( jack , mary )   0.33
2 01
11
d ( jack , jim )   0.67
111
1 2
d ( jim , mary )   0.75
11 2
53
 Standardizing Numeric Data
x
z   
 Z-score:
 X: raw score to be standardized, μ: mean of the population, σ:
standard deviation
 the distance between the raw score and the population mean in
units of the standard deviation
 negative when the raw score is below the mean, “+” when above
 An alternative way: Calculate the mean absolute deviation
sf  1
n (| x1 f  m f |  | x2 f  m f | ... | xnf  m f |)
where m  1 (x  x  ...  x )
xif  m f
.
f n 1f 2 f nf

zif  sf
 standardized measure (z-score):
 Using mean absolute deviation is more robust than using standard
deviation

54
 Example:
Data Matrix and Dissimilarity Matrix
Data Matrix
point attribute1 attribute2
x1 1 2
x2 3 5
x3 2 0
x4 4 5

Dissimilarity Matrix
(with Euclidean Distance)

x1 x2 x3 x4
x1 0
x2 3.61 0
x3 5.1 5.1 0
x4 4.24 1 5.39 0

55
Distance on Numeric Data: Minkowski Distance
 Minkowski distance: A popular distance measure

where i = (xi1, xi2, …, xip) and j = (xj1, xj2, …, xjp) are two
p-dimensional data objects, and h is the order (the
distance so defined is also called L-h norm)
 Properties
 d(i, j) > 0 if i ≠ j, and d(i, i) = 0 (Positive definiteness)
 d(i, j) = d(j, i) (Symmetry)
 d(i, j)  d(i, k) + d(k, j) (Triangle Inequality)
 A distance that satisfies these properties is a metric
56
 Special Cases of Minkowski Distance
 h = 1: Manhattan (city block, L1 norm) distance
 E.g., the Hamming distance: the number of bits that are

different between two binary vectors

d (i, j) | x  x |  | x  x | ... | x  x |
i1 j1 i2 j 2 ip jp

 h = 2: (L2 norm) Euclidean distance

d (i, j)  (| x  x |2  | x  x |2 ... | x  x |2 )
i1 j1 i2 j 2 ip jp

 h  . “supremum” (Lmax norm, L norm) distance.

 This is the maximum difference between any component

(attribute) of the vectors

57
 Example: Minkowski Distance
Dissimilarity Matrices
point attribute 1 attribute 2 Manhattan (L1)
x1 1 2
L x1 x2 x3 x4
x2 3 5 x1 0
x3 2 0 x2 5 0
x4 4 5 x3 3 6 0
x4 6 1 7 0
Euclidean (L2)
L2 x1 x2 x3 x4
x1 0
x2 3.61 0
x3 2.24 5.1 0
x4 4.24 1 5.39 0

Supremum
L x1 x2 x3 x4
x1 0
x2 3 0
x3 2 5 0
x4 3 1 5 0
58
 Ordinal Variables

 An ordinal variable can be discrete or continuous

 Order is important, e.g., rank
 Can be treated like interval-scaled
 replace xif by their rank rif {1,...,M f }
 map the range of each variable onto [0, 1] by replacing
i-th object in the f-th variable by
rif 1
zif 
M f 1
 compute the dissimilarity using methods for interval-
scaled variables

59
 Attributes of Mixed Type

 A database may contain all attribute types

 Nominal, symmetric binary, asymmetric binary, numeric,
ordinal
 One may use a weighted formula to combine their effects
 pf  1 ij( f ) dij( f )
d (i, j) 
 pf  1 ij( f )
 f is binary or nominal:
dij(f) = 0 if xif = xjf , or dij(f) = 1 otherwise
 f is numeric: use the normalized distance
 f is ordinal
 Compute ranks rif and r 1
zif  if

 Treat zif as interval-scaled M 1 f

60
 Cosine Similarity
 A document can be represented by thousands of attributes, each
recording the frequency of a particular word (such as keywords) or
phrase in the document.

 Other vector objects: gene features in micro-arrays, …

 Applications: information retrieval, biologic taxonomy, gene feature
mapping, ...
 Cosine measure: If d1 and d2 are two vectors (e.g., term-frequency
vectors), then
cos(d1, d2) = (d1  d2) /||d1|| ||d2|| ,
where  indicates vector dot product, ||d||: the length of vector d

61
 Example: Cosine Similarity
 cos(d1, d2) = (d1  d2) /||d1|| ||d2|| ,
where  indicates vector dot product, ||d|: the length of vector d

 Ex: Find the similarity between documents 1 and 2.

d1 = (5, 0, 3, 0, 2, 0, 0, 2, 0, 0)
d2 = (3, 0, 2, 0, 1, 1, 0, 1, 0, 1)

d1d2 = 5*3+0*0+3*2+0*0+2*1+0*1+0*1+2*1+0*0+0*1 = 25
||d1||= (5*5+0*0+3*3+0*0+2*2+0*0+0*0+2*2+0*0+0*0)0.5=(42)0.5
= 6.481
||d2||= (3*3+0*0+2*2+0*0+1*1+1*1+0*0+1*1+0*0+1*1)0.5=(17)0.5
= 4.12
cos(d1, d2 ) = 0.94

62
 Chapter 2: Getting to Know Your Data

 Data Objects and Attribute Types

 Basic Statistical Descriptions of Data

 Data Visualization

 Measuring Data Similarity and Dissimilarity

 Summary

63
 Summary
 Data attribute types: nominal, binary, ordinal, interval-scaled, ratio-
scaled
 Many types of data sets, e.g., numerical, text, graph, Web, image.
 Gain insight into the data by:
 Basic statistical data description: central tendency, dispersion,
graphical displays
 Data visualization: map data onto graphical primitives
 Measure data similarity
 Above steps are the beginning of data preprocessing.
 Many methods have been developed but still an active area of research.

64
 References
 W. Cleveland, Visualizing Data, Hobart Press, 1993
 T. Dasu and T. Johnson. Exploratory Data Mining and Data Cleaning. John Wiley, 2003
 U. Fayyad, G. Grinstein, and A. Wierse. Information Visualization in Data Mining and
Knowledge Discovery, Morgan Kaufmann, 2001
 L. Kaufman and P. J. Rousseeuw. Finding Groups in Data: an Introduction to Cluster
Analysis. John Wiley & Sons, 1990.
 H. V. Jagadish, et al., Special Issue on Data Reduction Techniques. Bulletin of the Tech.
Committee on Data Eng., 20(4), Dec. 1997
 D. A. Keim. Information visualization and visual data mining, IEEE trans. on
Visualization and Computer Graphics, 8(1), 2002
 D. Pyle. Data Preparation for Data Mining. Morgan Kaufmann, 1999
 S. Santini and R. Jain,” Similarity measures”, IEEE Trans. on Pattern Analysis and
Machine Intelligence, 21(9), 1999
 E. R. Tufte. The Visual Display of Quantitative Information, 2nd ed., Graphics Press,
2001
 C. Yu , et al., Visual data mining of multimedia data for social and behavioral studies,
Information Visualization, 8(1), 2009
65
 Data Mining:
Concepts and Techniques
(3rd ed.)

— Chapter 3 —
Jiawei Han, Micheline Kamber, and Jian Pei
University of Illinois at Urbana-Champaign &
Simon Fraser University
©2011 Han, Kamber & Pei. All rights reserved.
1
 Chapter 3: Data Preprocessing

 Data Preprocessing: An Overview

 Data Quality

 Major Tasks in Data Preprocessing

 Data Cleaning

 Data Integration

 Data Reduction

 Data Transformation and Data Discretization

 Summary
2
 Data Quality: Why Preprocess the Data?

 Measures for data quality: A multidimensional view

 Accuracy: correct or wrong, accurate or not
 Completeness: not recorded, unavailable, …
 Consistency: some modified but some not, dangling, …
 Timeliness: timely update?
 Believability: how trustable the data are correct?
 Interpretability: how easily the data can be
understood?

3
 Major Tasks in Data Preprocessing
 Data cleaning
 Fill in missing values, smooth noisy data, identify or remove
outliers, and resolve inconsistencies
 Data integration
 Integration of multiple databases, data cubes, or files
 Data reduction
 Dimensionality reduction
 Numerosity reduction
 Data compression
 Data transformation and data discretization
 Normalization
 Concept hierarchy generation

4
 Chapter 3: Data Preprocessing

 Data Preprocessing: An Overview

 Data Quality

 Major Tasks in Data Preprocessing

 Data Cleaning

 Data Integration

 Data Reduction

 Data Transformation and Data Discretization

 Summary
5
 Data Cleaning
 Data in the Real World Is Dirty: Lots of potentially incorrect data,
e.g., instrument faulty, human or computer error, transmission error
 incomplete: lacking attribute values, lacking certain attributes of
interest, or containing only aggregate data
 e.g., Occupation=“ ” (missing data)
 noisy: containing noise, errors, or outliers
 e.g., Salary=“−10” (an error)
 inconsistent: containing discrepancies in codes or names, e.g.,
 Age=“42”, Birthday=“03/07/2010”
 Was rating “1, 2, 3”, now rating “A, B, C”
 discrepancy between duplicate records
 Intentional (e.g., disguised missing data)
 Jan. 1 as everyone’s birthday?
6
 Incomplete (Missing) Data

 Data is not always available

 E.g., many tuples have no recorded value for several
attributes, such as customer income in sales data
 Missing data may be due to
 equipment malfunction
 inconsistent with other recorded data and thus deleted
 data not entered due to misunderstanding
 certain data may not be considered important at the
time of entry
 not register history or changes of the data
 Missing data may need to be inferred
7
 How to Handle Missing Data?
 Ignore the tuple: usually done when class label is missing
(when doing classification)—not effective when the % of
missing values per attribute varies considerably
 Fill in the missing value manually: tedious + infeasible?
 Fill in it automatically with
 a global constant : e.g., “unknown”, a new class?!
 the attribute mean
 the attribute mean for all samples belonging to the
same class: smarter
 the most probable value: inference-based such as
Bayesian formula or decision tree
8
 Noisy Data
 Noise: random error or variance in a measured variable
 Incorrect attribute values may be due to
 faulty data collection instruments

 data entry problems

 data transmission problems

 technology limitation

 inconsistency in naming convention

 Other data problems which require data cleaning

 duplicate records

 incomplete data

 inconsistent data

9
 How to Handle Noisy Data?

 Binning
 first sort data and partition into (equal-frequency) bins

 then one can smooth by bin means, smooth by bin

median, smooth by bin boundaries, etc.

 Regression
 smooth by fitting the data into regression functions

 Clustering
 detect and remove outliers

 Combined computer and human inspection

 detect suspicious values and check by human (e.g.,

deal with possible outliers)

10
 Data Cleaning as a Process
 Data discrepancy detection
 Use metadata (e.g., domain, range, dependency, distribution)

 Check field overloading

 Check uniqueness rule, consecutive rule and null rule

 Use commercial tools

 Data scrubbing: use simple domain knowledge (e.g., postal

code, spell-check) to detect errors and make corrections

 Data auditing: by analyzing data to discover rules and

relationship to detect violators (e.g., correlation and clustering

to find outliers)
 Data migration and integration
 Data migration tools: allow transformations to be specified

 ETL (Extraction/Transformation/Loading) tools: allow users to

specify transformations through a graphical user interface
 Integration of the two processes
 Iterative and interactive (e.g., Potter’s Wheels)

11
 Chapter 3: Data Preprocessing

 Data Preprocessing: An Overview

 Data Quality

 Major Tasks in Data Preprocessing

 Data Cleaning

 Data Integration

 Data Reduction

 Data Transformation and Data Discretization

 Summary
12
 Data Integration
 Data integration:
 Combines data from multiple sources into a coherent store
 Schema integration: e.g., A.cust-id  B.cust-#
 Integrate metadata from different sources
 Entity identification problem:
 Identify real world entities from multiple data sources, e.g., Bill
Clinton = William Clinton
 Detecting and resolving data value conflicts
 For the same real world entity, attribute values from different
sources are different
 Possible reasons: different representations, different scales, e.g.,
metric vs. British units
13
 Handling Redundancy in Data Integration

 Redundant data occur often when integration of multiple

databases
 Object identification: The same attribute or object
may have different names in different databases
 Derivable data: One attribute may be a “derived”
attribute in another table, e.g., annual revenue
 Redundant attributes may be able to be detected by
correlation analysis and covariance analysis
 Careful integration of the data from multiple sources may
help reduce/avoid redundancies and inconsistencies and
improve mining speed and quality
14
 Correlation Analysis (Nominal Data)
 Χ2 (chi-square) test
(Observed  Expected) 2
 
2

Expected
 The larger the Χ2 value, the more likely the variables are
related
 The cells that contribute the most to the Χ2 value are
those whose actual count is very different from the
expected count
 Correlation does not imply causality
 # of hospitals and # of car-theft in a city are correlated
 Both are causally linked to the third variable: population

15
 Chi-Square Calculation: An Example

Play chess Not play chess Sum (row)

Like science fiction 250(90) 200(360) 450

Not like science fiction 50(210) 1000(840) 1050

Sum(col.) 300 1200 1500

 Χ2 (chi-square) calculation (numbers in parenthesis are

expected counts calculated based on the data distribution
in the two categories)
(250  90) 2 (50  210) 2 (200  360) 2 (1000  840) 2
 
2
    507.93
90 210 360 840
 It shows that like_science_fiction and play_chess are
correlated in the group
16
 Correlation Analysis (Numeric Data)

 Correlation coefficient (also called Pearson’s product

moment coefficient)

i1 (ai  A)(bi  B) 

n n
(ai bi )  n AB
rA, B   i 1
(n  1) A B (n  1) A B

where n is the number of tuples, A and B are the respective

means of A and B, σA and σB are the respective standard deviation
of A and B, and Σ(aibi) is the sum of the AB cross-product.
 If rA,B > 0, A and B are positively correlated (A’s values
increase as B’s). The higher, the stronger correlation.
 rA,B = 0: independent; rAB < 0: negatively correlated

17
Visually Evaluating Correlation

Scatter plots
showing the
similarity from
–1 to 1.

18
Correlation (viewed as linear relationship)
 Correlation measures the linear relationship
between objects
 To compute correlation, we standardize data
objects, A and B, and then take their dot product

a'k  (ak  mean( A)) / std ( A)

b'k  (bk  mean( B)) / std ( B)

correlatio n( A, B)  A' B'

19
 Covariance (Numeric Data)
 Covariance is similar to correlation

Correlation coefficient:

where n is the number of tuples, A and B are the respective mean or

expected values of A and B, σA and σB are the respective standard
deviation of A and B.
 Positive covariance: If CovA,B > 0, then A and B both tend to be larger
than their expected values.
 Negative covariance: If CovA,B < 0 then if A is larger than its expected
value, B is likely to be smaller than its expected value.
 Independence: CovA,B = 0 but the converse is not true:
 Some pairs of random variables may have a covariance of 0 but are not
independent. Only under some additional assumptions (e.g., the data follow
multivariate normal distributions) does a covariance of 0 imply independence20
 Co-Variance: An Example

 It can be simplified in computation as

 Suppose two stocks A and B have the following values in one week:
(2, 5), (3, 8), (5, 10), (4, 11), (6, 14).

 Question: If the stocks are affected by the same industry trends, will
their prices rise or fall together?

 E(A) = (2 + 3 + 5 + 4 + 6)/ 5 = 20/5 = 4

 E(B) = (5 + 8 + 10 + 11 + 14) /5 = 48/5 = 9.6

 Cov(A,B) = (2×5+3×8+5×10+4×11+6×14)/5 − 4 × 9.6 = 4

 Thus, A and B rise together since Cov(A, B) > 0.

 Chapter 3: Data Preprocessing

 Data Preprocessing: An Overview

 Data Quality

 Major Tasks in Data Preprocessing

 Data Cleaning

 Data Integration

 Data Reduction

 Data Transformation and Data Discretization

 Summary
22
 Data Reduction Strategies
 Data reduction: Obtain a reduced representation of the data set that
is much smaller in volume but yet produces the same (or almost the
same) analytical results
 Why data reduction? — A database/data warehouse may store
terabytes of data. Complex data analysis may take a very long time to
run on the complete data set.
 Data reduction strategies
 Dimensionality reduction, e.g., remove unimportant attributes

 Wavelet transforms

 Principal Components Analysis (PCA)

 Feature subset selection, feature creation

 Numerosity reduction (some simply call it: Data Reduction)

 Regression and Log-Linear Models

 Histograms, clustering, sampling

 Data cube aggregation

 Data compression

23
Data Reduction 1: Dimensionality Reduction
 Curse of dimensionality
 When dimensionality increases, data becomes increasingly sparse
 Density and distance between points, which is critical to clustering, outlier
analysis, becomes less meaningful
 The possible combinations of subspaces will grow exponentially
 Dimensionality reduction
 Avoid the curse of dimensionality
 Help eliminate irrelevant features and reduce noise
 Reduce time and space required in data mining
 Allow easier visualization
 Dimensionality reduction techniques
 Wavelet transforms
 Principal Component Analysis
 Supervised and nonlinear techniques (e.g., feature selection)

24
 Mapping Data to a New Space
 Fourier transform
 Wavelet transform

Two Sine Waves Two Sine Waves + Noise Frequency

25
 What Is Wavelet Transform?
 Decomposes a signal into
different frequency subbands
 Applicable to n-
dimensional signals
 Data are transformed to
preserve relative distance
between objects at different
levels of resolution
 Allow natural clusters to
become more distinguishable
 Used for image compression

26
 Wavelet Transformation
Haar2 Daubechie4
 Discrete wavelet transform (DWT) for linear signal
processing, multi-resolution analysis
 Compressed approximation: store only a small fraction of
the strongest of the wavelet coefficients
 Similar to discrete Fourier transform (DFT), but better
lossy compression, localized in space
 Method:
 Length, L, must be an integer power of 2 (padding with 0’s, when
necessary)
 Each transform has 2 functions: smoothing, difference
 Applies to pairs of data, resulting in two set of data of length L/2
 Applies two functions recursively, until reaches the desired length
27
 Wavelet Decomposition
 Wavelets: A math tool for space-efficient hierarchical
decomposition of functions
 S = [2, 2, 0, 2, 3, 5, 4, 4] can be transformed to S^ =
[23/4, -11/4, 1/2, 0, 0, -1, -1, 0]
 Compression: many small detail coefficients can be
replaced by 0’s, and only the significant coefficients are
retained

28
 Haar Wavelet Coefficients
Coefficient “Supports”
Hierarchical 2.75 +
2.75
decomposition
structure (a.k.a. + -1.25 + -
“error tree”) + -1.25
-
0.5 0
0.5 + -
+ - + - 0 + -
0 -1 -1 0
+
- + - + - + -
0 + -
2 2 0 2 3 5 4 4 -1 + -
-1 + -
Original frequency distribution 0 + -
29
 Why Wavelet Transform?
 Use hat-shape filters
 Emphasize region where points cluster

 Suppress weaker information in their boundaries

 Effective removal of outliers

 Insensitive to noise, insensitive to input order

 Multi-resolution
 Detect arbitrary shaped clusters at different scales

 Efficient
 Complexity O(N)

 Only applicable to low dimensional data

30
 Principal Component Analysis (PCA)
 Find a projection that captures the largest amount of variation in data
 The original data are projected onto a much smaller space, resulting
in dimensionality reduction. We find the eigenvectors of the
covariance matrix, and these eigenvectors define the new space

x2

x1
31
 Principal Component Analysis (Steps)
 Given N data vectors from n-dimensions, find k ≤ n orthogonal vectors
(principal components) that can be best used to represent data
 Normalize input data: Each attribute falls within the same range
 Compute k orthonormal (unit) vectors, i.e., principal components
 Each input data (vector) is a linear combination of the k principal
component vectors
 The principal components are sorted in order of decreasing
“significance” or strength
 Since the components are sorted, the size of the data can be
reduced by eliminating the weak components, i.e., those with low
variance (i.e., using the strongest principal components, it is
possible to reconstruct a good approximation of the original data)
 Works for numeric data only
32
 Attribute Subset Selection
 Another way to reduce dimensionality of data
 Redundant attributes
 Duplicate much or all of the information contained in
one or more other attributes
 E.g., purchase price of a product and the amount of
sales tax paid
 Irrelevant attributes
 Contain no information that is useful for the data
mining task at hand
 E.g., students' ID is often irrelevant to the task of
predicting students' GPA

33
 Heuristic Search in Attribute Selection

 There are 2d possible attribute combinations of d attributes

 Typical heuristic attribute selection methods:
 Best single attribute under the attribute independence

assumption: choose by significance tests

 Best step-wise feature selection:

 The best single-attribute is picked first

 Then next best attribute condition to the first, ...

 Step-wise attribute elimination:

 Repeatedly eliminate the worst attribute

 Best combined attribute selection and elimination

 Optimal branch and bound:

 Use attribute elimination and backtracking

34
Attribute Creation (Feature Generation)
 Create new attributes (features) that can capture the
important information in a data set more effectively than
the original ones
 Three general methodologies
 Attribute extraction

 Domain-specific

 Mapping data to new space (see: data reduction)

 E.g., Fourier transformation, wavelet

transformation, manifold approaches (not covered)

 Attribute construction

 Combining features (see: discriminative frequent

patterns in Chapter 7)
 Data discretization
35
Data Reduction 2: Numerosity Reduction
 Reduce data volume by choosing alternative, smaller
forms of data representation
 Parametric methods (e.g., regression)
 Assume the data fits some model, estimate model

parameters, store only the parameters, and discard

the data (except possible outliers)
 Ex.: Log-linear models—obtain value at a point in m-

D space as the product on appropriate marginal

subspaces
 Non-parametric methods
 Do not assume models

 Major families: histograms, clustering, sampling, …

36
 Parametric Data Reduction: Regression
and Log-Linear Models
 Linear regression
 Data modeled to fit a straight line

 Often uses the least-square method to fit the line

 Multiple regression
 Allows a response variable Y to be modeled as a

linear function of multidimensional feature vector

 Log-linear model
 Approximates discrete multidimensional probability

distributions

37
 y
Regression Analysis
Y1
 Regression analysis: A collective name for
techniques for the modeling and analysis Y1’
y=x+1
of numerical data consisting of values of a
dependent variable (also called
response variable or measurement) and X1 x
of one or more independent variables (aka.
explanatory variables or predictors)
 Used for prediction
 The parameters are estimated so as to give (including forecasting of
a "best fit" of the data time-series data), inference,
hypothesis testing, and
 Most commonly the best fit is evaluated by
modeling of causal
using the least squares method, but
relationships
other criteria have also been used

38
Regress Analysis and Log-Linear Models
 Linear regression: Y = w X + b
 Two regression coefficients, w and b, specify the line and are to be
estimated by using the data at hand
 Using the least squares criterion to the known values of Y1, Y2, …,
X1, X2, ….
 Multiple regression: Y = b0 + b1 X1 + b2 X2
 Many nonlinear functions can be transformed into the above
 Log-linear models:
 Approximate discrete multidimensional probability distributions
 Estimate the probability of each point (tuple) in a multi-dimensional
space for a set of discretized attributes, based on a smaller subset
of dimensional combinations
 Useful for dimensionality reduction and data smoothing
39
 Histogram Analysis
 Divide data into buckets and 40
store average (sum) for each 35
bucket
30
 Partitioning rules:
25
 Equal-width: equal bucket 20
range
15
 Equal-frequency (or equal- 10
depth)
5
0

100000
10000

20000

30000

40000

50000

60000

70000

80000

90000
40
 Clustering
 Partition data set into clusters based on similarity, and
store cluster representation (e.g., centroid and diameter)
only
 Can be very effective if data is clustered but not if data
is “smeared”
 Can have hierarchical clustering and be stored in multi-
dimensional index tree structures
 There are many choices of clustering definitions and
clustering algorithms
 Cluster analysis will be studied in depth in Chapter 10

41
 Sampling

 Sampling: obtaining a small sample s to represent the

whole data set N
 Allow a mining algorithm to run in complexity that is
potentially sub-linear to the size of the data
 Key principle: Choose a representative subset of the data
 Simple random sampling may have very poor
performance in the presence of skew
 Develop adaptive sampling methods, e.g., stratified
sampling:
 Note: Sampling may not reduce database I/Os (page at a
time)
42
 Types of Sampling

 Simple random sampling

 There is an equal probability of selecting any particular
item
 Sampling without replacement
 Once an object is selected, it is removed from the
population
 Sampling with replacement
 A selected object is not removed from the population

 Stratified sampling:
 Partition the data set, and draw samples from each
partition (proportionally, i.e., approximately the same
percentage of the data)
 Used in conjunction with skewed data

43
Sampling: With or without Replacement

Raw Data
44
Sampling: Cluster or Stratified Sampling

Raw Data Cluster/Stratified Sample

45
 Data Cube Aggregation

 The lowest level of a data cube (base cuboid)

 The aggregated data for an individual entity of interest
 E.g., a customer in a phone calling data warehouse
 Multiple levels of aggregation in data cubes
 Further reduce the size of data to deal with
 Reference appropriate levels
 Use the smallest representation which is enough to
solve the task
 Queries regarding aggregated information should be
answered using data cube, when possible
46
 Data Reduction 3: Data Compression
 String compression
 There are extensive theories and well-tuned algorithms

 Typically lossless, but only limited manipulation is

possible without expansion

 Audio/video compression
 Typically lossy compression, with progressive refinement

 Sometimes small fragments of signal can be

reconstructed without reconstructing the whole

 Time sequence is not audio
 Typically short and vary slowly with time

 Dimensionality and numerosity reduction may also be

considered as forms of data compression
47
 Data Compression

Original Data Compressed

Data
lossless

Original Data
Approximated

48
 Chapter 3: Data Preprocessing

 Data Preprocessing: An Overview

 Data Quality

 Major Tasks in Data Preprocessing

 Data Cleaning

 Data Integration

 Data Reduction

 Data Transformation and Data Discretization

 Summary
49
 Data Transformation
 A function that maps the entire set of values of a given attribute to a
new set of replacement values s.t. each old value can be identified
with one of the new values
 Methods
 Smoothing: Remove noise from data
 Attribute/feature construction
 New attributes constructed from the given ones
 Aggregation: Summarization, data cube construction
 Normalization: Scaled to fall within a smaller, specified range
 min-max normalization
 z-score normalization
 normalization by decimal scaling
 Discretization: Concept hierarchy climbing 50
 Normalization
 Min-max normalization: to [new_minA, new_maxA]
v  minA
v'  (new _ maxA  new _ minA)  new _ minA
maxA  minA
 Ex. Let income range $12,000 to $98,000 normalized to [0.0,
73,600  12,000
1.0]. Then $73,000 is mapped to 98,000  12,000 (1.0  0)  0  0.716
 Z-score normalization (μ: mean, σ: standard deviation):
v  A
v' 
 A

73,600  54,000
 Ex. Let μ = 54,000, σ = 16,000. Then 16,000
 1.225

 Normalization by decimal scaling

v
v'  j Where j is the smallest integer such that Max(|ν’|) < 1
10
51
 Discretization
 Three types of attributes
 Nominal—values from an unordered set, e.g., color, profession
 Ordinal—values from an ordered set, e.g., military or academic
rank
 Numeric—real numbers, e.g., integer or real numbers
 Discretization: Divide the range of a continuous attribute into intervals
 Interval labels can then be used to replace actual data values
 Reduce data size by discretization
 Supervised vs. unsupervised
 Split (top-down) vs. merge (bottom-up)
 Discretization can be performed recursively on an attribute
 Prepare for further analysis, e.g., classification

52
 Data Discretization Methods
 Typical methods: All the methods can be applied recursively
 Binning
 Top-down split, unsupervised
 Histogram analysis
 Top-down split, unsupervised
 Clustering analysis (unsupervised, top-down split or
bottom-up merge)
 Decision-tree analysis (supervised, top-down split)
 Correlation (e.g., 2) analysis (unsupervised, bottom-up
merge)

53
 Simple Discretization: Binning

 Equal-width (distance) partitioning

 Divides the range into N intervals of equal size: uniform grid
 if A and B are the lowest and highest values of the attribute, the
width of intervals will be: W = (B –A)/N.
 The most straightforward, but outliers may dominate presentation
 Skewed data is not handled well

 Equal-depth (frequency) partitioning

 Divides the range into N intervals, each containing approximately
same number of samples
 Good data scaling
 Managing categorical attributes can be tricky
54
 Binning Methods for Data Smoothing
 Sorted data for price (in dollars): 4, 8, 9, 15, 21, 21, 24, 25, 26,
28, 29, 34
* Partition into equal-frequency (equi-depth) bins:
- Bin 1: 4, 8, 9, 15
- Bin 2: 21, 21, 24, 25
- Bin 3: 26, 28, 29, 34
* Smoothing by bin means:
- Bin 1: 9, 9, 9, 9
- Bin 2: 23, 23, 23, 23
- Bin 3: 29, 29, 29, 29
* Smoothing by bin boundaries:
- Bin 1: 4, 4, 4, 15
- Bin 2: 21, 21, 25, 25
- Bin 3: 26, 26, 26, 34
55
Discretization Without Using Class Labels
(Binning vs. Clustering)

Data Equal interval width (binning)

Equal frequency (binning) K-means clustering leads to better results

56
 Discretization by Classification &
Correlation Analysis
 Classification (e.g., decision tree analysis)
 Supervised: Given class labels, e.g., cancerous vs. benign
 Using entropy to determine split point (discretization point)
 Top-down, recursive split
 Details to be covered in Chapter 7
 Correlation analysis (e.g., Chi-merge: χ2-based discretization)
 Supervised: use class information
 Bottom-up merge: find the best neighboring intervals (those
having similar distributions of classes, i.e., low χ2 values) to merge
 Merge performed recursively, until a predefined stopping condition

57
 Concept Hierarchy Generation

 Concept hierarchy organizes concepts (i.e., attribute values)

hierarchically and is usually associated with each dimension in a data
warehouse
 Concept hierarchies facilitate drilling and rolling in data warehouses to
view data in multiple granularity
 Concept hierarchy formation: Recursively reduce the data by collecting
and replacing low level concepts (such as numeric values for age) by
higher level concepts (such as youth, adult, or senior)
 Concept hierarchies can be explicitly specified by domain experts
and/or data warehouse designers
 Concept hierarchy can be automatically formed for both numeric and
nominal data. For numeric data, use discretization methods shown.

58
 Concept Hierarchy Generation
for Nominal Data
 Specification of a partial/total ordering of attributes
explicitly at the schema level by users or experts
 street < city < state < country
 Specification of a hierarchy for a set of values by explicit
data grouping
 {Urbana, Champaign, Chicago} < Illinois
 Specification of only a partial set of attributes
 E.g., only street < city, not others
 Automatic generation of hierarchies (or attribute levels) by
the analysis of the number of distinct values
 E.g., for a set of attributes: {street, city, state, country}
59
 Automatic Concept Hierarchy Generation
 Some hierarchies can be automatically generated based on
the analysis of the number of distinct values per attribute in
the data set
 The attribute with the most distinct values is placed at
the lowest level of the hierarchy
 Exceptions, e.g., weekday, month, quarter, year

country 15 distinct values

province_or_ state 365 distinct values

city 3567 distinct values

street 674,339 distinct values

60
 Chapter 3: Data Preprocessing

 Data Preprocessing: An Overview

 Data Quality

 Major Tasks in Data Preprocessing

 Data Cleaning

 Data Integration

 Data Reduction

 Data Transformation and Data Discretization

 Summary
61
 Summary
 Data quality: accuracy, completeness, consistency, timeliness,
believability, interpretability
 Data cleaning: e.g. missing/noisy values, outliers
 Data integration from multiple sources:
 Entity identification problem

 Remove redundancies

 Detect inconsistencies

 Data reduction
 Dimensionality reduction

 Numerosity reduction

 Data compression

 Data transformation and data discretization

 Normalization

 Concept hierarchy generation

62
 References
 D. P. Ballou and G. K. Tayi. Enhancing data quality in data warehouse environments. Comm. of
ACM, 42:73-78, 1999
 A. Bruce, D. Donoho, and H.-Y. Gao. Wavelet analysis. IEEE Spectrum, Oct 1996
 T. Dasu and T. Johnson. Exploratory Data Mining and Data Cleaning. John Wiley, 2003
 J. Devore and R. Peck. Statistics: The Exploration and Analysis of Data. Duxbury Press, 1997.
 H. Galhardas, D. Florescu, D. Shasha, E. Simon, and C.-A. Saita. Declarative data cleaning:
Language, model, and algorithms. VLDB'01
 M. Hua and J. Pei. Cleaning disguised missing data: A heuristic approach. KDD'07
 H. V. Jagadish, et al., Special Issue on Data Reduction Techniques. Bulletin of the Technical
Committee on Data Engineering, 20(4), Dec. 1997
 H. Liu and H. Motoda (eds.). Feature Extraction, Construction, and Selection: A Data Mining
Perspective. Kluwer Academic, 1998
 J. E. Olson. Data Quality: The Accuracy Dimension. Morgan Kaufmann, 2003
 D. Pyle. Data Preparation for Data Mining. Morgan Kaufmann, 1999
 V. Raman and J. Hellerstein. Potters Wheel: An Interactive Framework for Data Cleaning and
Transformation, VLDB’2001
 T. Redman. Data Quality: The Field Guide. Digital Press (Elsevier), 2001
 R. Wang, V. Storey, and C. Firth. A framework for analysis of data quality research. IEEE Trans.
Knowledge and Data Engineering, 7:623-640, 1995
63