Acta Environment - 2022 - Krupaprajapati - Bioremediation
Acta Environment - 2022 - Krupaprajapati - Bioremediation
Abstract
As a result of rapid industrialization, heavy metal pollution has become a major global concern. Toxicological manifestations occur
from the accumulation of heavy metals as a result of anthropogenic activities. When heavy metals enter the food chain at somewhat
greater concentrations, they have a detrimental effect on human health. Ion exchange, coagulation, precipitation, reverse osmosis,
nanofiltration, ultra-filtration, and other traditional procedures for heavy metal cleanup are employed. Because of the high energy
and reagent needs, these approaches are effective yet costly. They also produce a lot of hazardous sludge and byproducts, which con-
taminate the environment. As a result, it is essential to formulate effective, efficient, cost-effective, and ecologically acceptable ways
for reducing heavy metal ion concentrations in the environment from harmful to safe levels. Bioremediation is a technique for clean-
ing up contaminated environments by using microorganisms or enzymes to convert hazardous heavy metals into less dangerous
forms. Bioremediation is a ‘green’ approach for removing heavy metals from the environment without releasing hazardous byprod-
ucts or metabolites. Their short generation time, large surface area and ease of genetic manipulation make them ideal candidates for
the bioremediation process. Bioremediation techniques’ effectiveness is determined by a variety of factors, both biotic and abiotic,
which primarily determine the bioavailability of metal for remediation. The tapering metal ion at various loci or sites is caused by
various metal microbe interactions such as sorption, accumulation, mineralization, and transformation. This review focuses on the
origins of heavy metals, their toxicological manifestations, and heavy metal bioremediation employing microorganisms.
Keywords: Heavy Metal; Microorganism; Bioremediation; Biomineralization; Biosorption
Citation: Sarita Sharma., et al. “Application of Microorganisms for Bioremediation of Heavy Metals". Acta Scientific Environmental Science 1.1 (2022):
01-09.
Application of Microorganisms for Bioremediation of Heavy Metals
02
Heavy metals: Occurrence metals on living forms are depicted in table 1 [20]. Figure 1
Metals or metalloids with an atomic density more than 5 g/ schematic flow chart shows sources of heavy metal contamination
cm are classified as heavy metal [4]. The impact of these metals
3 and biomagnifications of heavy metals (image created by PP in MS
on the environment and human health is referred to as “toxic Office 365 ProPlus, PowerPoint).
metal.” Heavy metals are naturally found in the environment as a
result of biogeochemical cycles, rock weathering, ore leaching, coal
mining, or volcanic eruptions. Metals are harmful and long-lasting
pollutants that are discharged into the environment as a result
of human activities such as industrial, mining, and agricultural
operations (repeated application of fertilizers and pesticides), and
they cannot be degraded or removed. (See Figure 1). When present
at low concentrations, heavy metals such as copper, zinc, and
nickel are required for life and play a important role in metabolic
processes in living organisms; they are known as microelements or
trace elements. Maximum prokaryotic and eukaryotic organisms
are hazardous to elevated doses of these metal ions. Mercury,
cadmium, and lead, among other non-essential heavy metals,
caused catastrophic harm to organisms even at extremely low
quantities. They enter the body system through food, air, and water
to a minor level, bio-accumulate over time, and create human
health issues [6]. The three classes of heavy metals classified the
metals as toxic metals (such as Zn, Ni, Cu, Hg, Cr, Pb, Cd, As, Co, Sn
etc.), precious metals (such as Au, Pd, Pt, Ag etc.), and radionuclides
(such as Th, U, Am, Ra etc.). Heavy metals are stable in nature, but
their persistence in the environment causes pollution, and their Figure 1: Schematic flow chart shows sources of heavy metal
bioaccumulation or biomagnification in the food chain poses a contamination and biomagnifications of heavy metals (image
severe health and environmental concern. The sources of heavy created by PP in MS Office 365 ProPlus, PowerPoint).
metals permitted limits, and harmful effects of various heavy
Accepted
Accept-
range in
Heavy Toxic effect on Toxic effect on ed range
Source drinking References
metal prokaryotes eukaryotes in soil
water
(mg/kg)
(ppb)
Anemia
Liver injuries
Emission from indus- Low sperm count
Destroys nucleic
try and combustion of Miscarriage
acid and proteins
blended fuels, Loss of memory [4,18]
Lead Inhibit enzyme 15 400
Coal burning, Nausea
activity and
Manufacture of batteries Inhibit seed germination,
transcription
and lead based paints chlorophyll production
Inhibition of Calvin cycle
enzymes
Citation: Sarita Sharma., et al. “Application of Microorganisms for Bioremediation of Heavy Metals". Acta Scientific Environmental Science 1.1 (2022):
01-09.
Application of Microorganisms for Bioremediation of Heavy Metals
03
Table 1: Toxicity of various heavy metals and their effect on life forms.
Physical and chemical methods for removing heavy metals are Biosorption
commonly used, but instead of completely destroying them, they Biosorption is one of the bioremediation methods. Biosorption
only transform them from toxic to less toxic forms. Ion exchange, is a passive method that does not include microbial metabolism
reverse osmosis, electrochemical treatment, electro dialysis, ultra [9]. Both dead and living biomass can be employed in biosorption.
filtration, solvent extraction, and chemical precipitation are some Even in much diluted metal solutions, this approach can be applied
of the common methods for removing heavy metals from the [33]. Gram-positive bacteria have multiple layers of peptidoglycan,
environment. These processes are costly because they take a lot which include teichoic acid, amino acids (alanine and glutamate),
of energy and reagents, and they produce a lot of toxic sludge and and meso-diaminopimelic acids, whereas gram-negative bacteria
byproducts, which harm the environment [9]. only have one layer [21]. This layer contains enzymes, glycoprotein,
lipopolysaccharides, and phospholipids, which act as ligands and
provide active sites for metal binding [7]. In the cell wall, complex
Citation: Sarita Sharma., et al. “Application of Microorganisms for Bioremediation of Heavy Metals". Acta Scientific Environmental Science 1.1 (2022):
01-09.
Application of Microorganisms for Bioremediation of Heavy Metals
04
carbohydrates, lipids, nucleic acids, and proteins combine to catalysed by enzymes and result in electron transfer from the
produce an additional polymer material (EPS). EPS has a strong mineral surface, resulting in sulphide oxidation to sulphate [29].
metal-binding ability to complex heavy metals, preventing metal There is no physical contact between the mineral surface and
access into the microbial intracellular environment. As a result, the microorganisms in non-contact methods. There is a secretion
they shield bacteria from metal toxicity [30]. of low molecular weight organic acids that are the outcome of
microbial metabolism in non-contact bioleaching. Heavy metals
Bioaccumulation and soil particles containing heavy metal minerals can be dissolved
The process of bioaccumulation is a metabolically active one by these organic acids [15]. Solubilised metal can be purified via
[9]. Heavy metal ions are transferred through the lipid bilayer into adsorption, ion exchange, membrane separation, and selective
the cytoplasm or intracellular regions by transporter proteins in precipitation processes.
bioaccumulation [30]. There are two stages to the bioaccumulation
process. Metal ions are adsorbed onto cells in the first stage, which Biomineralization
is fast and similar to biosorption. The second stage is more time- Biomineralization is the process by which living bacteria
consuming and involves active transport of metal species within convert aqueous metal ions into crystalline precipitates. Metals are
cells [16]. Metal ion sequestration is supported by metal-binding removed from the solution as a result of this reaction, providing a
entities such as proteins and peptide ligands [30]. This metal can way of detoxification as well as bio recovery [24]. Mineral formation
be found in particulate form, insoluble forms, and by products after is aided by the presence of a cell wall and additional organic layers
sequestration [19,22]. Endocytosis, ion channels, carrier-mediated (EPS and S-layer), which are highly variable and reactive interface
transport, complex permeation, and lipid permeation are just a few with varied hydrocarbon composition and structure [30]. Organic
of the mechanisms that allow heavy metals to accumulate in the ligands such as amine, carboxyl, hydroxyl, phosphoryl, and sulphur
bacterial membrane [8]. deprotonate as pH rises, leaving the microbial surface with a net
negative charge. Because our hazardous metals have positive
Biotransformation charges, they precipitate into more solid and compact mineral forms
The structure of a chemical compound is changed during in a consistent manner [23,35]. Microbes precipitate biomineral
biotransformation, resulting in the production of a molecule with such as oxides, sulphides, oxalate, sulphates, and phosphates [24].
a higher polarity [2]. As a result of this metal-microbe interaction,
metal and organic molecules are changed from harmful to less Microorganisms- the key players in bioremediation
toxic ones. Microorganisms have used a variety of enzymatic Bioremediation techniques that use microorganisms are
modification methods to change metals and reduce their toxicity, divided into bioaccumulation, biosorption, biotransformation,
including oxidation, reduction, alkylation, and methylation [32]. and biomineralization, whereas phytoremediation techniques use
Microbes have several characteristics that make them excellent plants and plant components in a metal-containing environment
for biotransformation, such as a high surface-to-volume ratio, [27]. Biosorption is a beneficial technology that plays a significant
rapid growth, high metabolic activity, and the ability to maintain role in the elimination of heavy metals. Biosorption is an emerging
sterility. Microbial transformation is used to biotransform a variety technology and a passive absorption technique involving adsorption
of contaminants, including hydrocarbons, pharmaceuticals, and on the cell surfaces of biological materials that are mainly
metals [17]. The mobility of heavy metal may be reduced indirectly reversible and metabolism-independent. Heavy metals accumulate
through the formation of biosurfactans, pigments, or siderophores. inside cellular components through a complex process known as
bioaccumulation. Microbial biosorption has several advantages,
Bioleaching including a low operating cost, a simple, highly effective, and
Microbes such as bacteria and fungus are used in bioleaching. ecologically acceptable approach [11,27]. Heavy metals including
They’re found in nature and help to dissolve metal sulphides and Cu, Zn, Ni, Cr, Co, Mo, Fe, and Mn are necessary micronutrients for
oxides from ores and secondary wastes [30]. In bioleaching, there microbes, plants, and animals [11]. Metals, on the other hand, had a
are primarily two mechanisms. There are two types of bioleaching: variety of physiological, biochemical, and genotoxic impacts on all
contact and non-contact. Microbes and mineral sulphide make types of living things when their concentrations were beyond their
physical contact in the contact mechanism. Some processes are
Citation: Sarita Sharma., et al. “Application of Microorganisms for Bioremediation of Heavy Metals". Acta Scientific Environmental Science 1.1 (2022):
01-09.
Application of Microorganisms for Bioremediation of Heavy Metals
05
threshold levels. Heavy metal concentrations have a significant by 78 % utilizing a 16 mg/L metal ion concentration [5]. As a type of
impact on microbial communities in two ways: (i) metabolic mercury-resistant strain, Pseudomonas aeruginosa can selectively
function suppression and (ii) genetic material regulation [12]. adsorb mercury ions with a maximal absorption capability of
about 180 mg/g. These mercury ions are accumulated by cysteine-
Due to their metal sequestering capabilities, algae, bacteria, rich transport proteins, which have a high affinity for mercury ions
fungi, and yeast have proven to be potential metal bio-sorbents. and are enriched in sulfhydryl groups. In an aqueous solution, both
Metal removal using intact microbial cells and cell-bound EPS dead and living Arthrobacter viscosus biomass can convert Cr(VI)
has been successful in both ambient and industrial wastewater to Cr(III). When Cr(VI) concentrations are less than 100 mg/L,
sources [9,26]. The use of metal-resistant strains in a single, 100 % Cr(VI) can be removed from the aqueous solution by using
consortium, and immobilized form for heavy metal removal has an acidic condition (pH 2). From a 100 mg/L Cu(II) containing
achieved promising benefits. The biosorption capability of any solution, Eichhornia spp. biomass obtained from Chandola Lake can
bio-sorbent, on the other hand, is determined by its prehistory, remove 85.0 % copper (Cu). The bacteria Rhodobacter capsulatus
pretreatment, and experimental settings. The bio-sorbent should can absorb Zn(II) with a maximum absorption capability of 164
be inexpensive, efficient, and simple to cultivate and harvest. To mg/g. The bacteria Bacillus cereus RC-1 has Cd(II) biosorption
improve biosorption, the organism should be adaptable to changes capacity in both living and dead cells, with living cells having 24.01
in bioreactor configuration, as well as physical and chemical mg/g and dead cells having 31.95 mg/g biosorption capacity [34].
conditions [10].
Metal-binding is mostly accomplished by the microbial cell
Bioremediation by bacteria wall. Electrostatic forces enable microbial surfaces to bind metal
Bacteria are the most common bacteria on the planet, and cations due to their anionic nature. Peptidoglycan, teichoic, and
they can survive in a variety of environments. Bacteria have been teichuronic acids make up the thicker cell wall of Gram-positive
frequently utilized to clean up heavy metal contaminants from bacteria. Teichoic and teichuronic acids are missing in Gram-
the environment due to their advantages such as small size, rapid negative bacteria, and the peptidoglycan layer is thin. Gram-
growth rate, and ease of cultivation. Through functional groups positive bacteria are more efficient in trapping metal ions than
like carboxyl, amino, phosphate, and sulphate, heavy metal ions Gram-negative bacteria [11]. When the pH is raised, the overall
can be adsorbed on bacteria’s polysaccharide slime layers. Heavy negative charge on the cell’s surface grows until the functional
metal ions can attach to these groups and accumulate in significant groups are deprotonated, which aids electrochemical attraction
amounts. Bacterial absorption capabilities for heavy metal ions and, eventually, metal ion absorption [24]. Extracellular polymeric
typically range from 1 mg/g to 500 mg/g [34]. substances (EPS) produce by bacteria, which are made up of
nucleic acids, proteins, lipids, and complex polysaccharides, also
Bacillus sp. has been recognized as having a high potential for
play a role in heavy metal ion adsorption. By preventing heavy
metal sequestration and has been exploited in the production
metals from entering the intracellular environment, the EPS on
of commercial biosorbents. Using Bacillus subtilis and Bacillus
the microbial cell surface can protect microorganisms against
megaterium, Above and his colleagues examined the biosorption
toxicity [13]. Heavy metal ions such as mercury (Hg), cobalt (Co),
of lead (Pb), chromium (Cr), and cadmium (Cd) in tannery effluent
copper (Cu), and cadmium (Cu) can be readily accumulated by the
[1,22]. Staphylococcus saprophyticus removes chromium (Cr), lead
presence of cationic and anionic functional groups on EPS [24].
(Pb), and copper (Cu) ions from industrial wastewaters at optimal
Heavy metal ions that have been adsorbed can be transferred into
pH values of 2.0, 4.5, and 3.5, respectively. A large amount of lead
living bacterial cells in a metabolism-dependent manner, and their
(Pb) was removed from a synthetic medium using Micrococcus
redox state can be modified to lessen their toxicity. The ability
luteus. Bacteria thrive in mixed cultures because they are more
of reductase from living bacteria to change the physicochemical
stable and survive longer. As a result, consortia of cultures are
circumstances of heavy metal ions after binding by functional
metabolically superior for metal biosorption and are more suited
groups can decrease their toxicity, which will improve their ability
for field use [34]. De Jaysankar et al. used a bacterium consortium
to remediate heavy metal pollutions [11].
of Acinetobacter sp. and Arthrobacter sp. to reduce chromium (Cr)
Citation: Sarita Sharma., et al. “Application of Microorganisms for Bioremediation of Heavy Metals". Acta Scientific Environmental Science 1.1 (2022):
01-09.
Application of Microorganisms for Bioremediation of Heavy Metals
06
Bioremediation by fungi amide, carboxyl, hydroxyl, and phosphate groups, which function
Fungi can be developed easily, produce a high yield of as metal-binding sites, as nitrogen and oxygen atoms capable of
biomass, and can easily be manipulated genetically as well as forming covalent bonds with metal ions [24]. The accumulation
morphologically. Fungi show high resistance to a large number of of large amounts of heavy metals by distinct algae species is both
heavy metals and simultaneously can accumulate micronutrients reliant and independent of their metabolism. The most promising
(Cu, Zn, Ni, Co, and Mn) and non-nutrient metals (Cd, Pb, Hg, and Ag). seaweeds for biosorption are brown and red algae [11].
Fungi have exhibited a high take up of heavy metals and therefore
In comparison to fungi and bacteria, algae have not been
they found a broader application to adsorb these metals [13,24].
extensively studied as a bio-sorbent. Algal bioaccumulation is aided
Through ion exchange and coordination, the chitin-chitosan
by a variety of metabolic mechanisms. Biosorption is a surface
complex, glucuronic acid, polysaccharides, polyphosphates,
phenomenon that mainly involves cell surface sequestration. As a
proteins, lipids, and inorganic ions in fungal cells play a major role
result, altering the algal cell wall could have a significant impact
in heavy metal adsorption [11,28]. The adsorption capability and
on metal ion binding. To improve the metal binding capacity
specificity of fungus strains to a heavy metal ion are influenced
of biomass and understand the intrinsic mechanism, many
by different types of ionizable sites and diverse functional groups
approaches for modifying cell walls in algae have been used [11].
such as amine, carboxyl, hydroxyl, phosphate, and sulfhydryl
Dead Chlorella vulgaris cells were employed to remove cadmium
groups. With significant biosorption capacities, Aspergillus niger
(Cd), copper (Cu), and lead (Pb) ions from aqueous solution under
has been deemed a potential bio-sorbent for removing Pb(II).
varied pH, bio-sorbent dosage, and contact time conditions. The
The bio-removal of Cr(VI) from mine drainage by a native fungal
results revealed that the biomass of C. vulgaris is an exceptionally
isolate Aspergillus fumigatus has been investigated. The functional
efficient bio-sorbent for the removal of cadmium (Cd), copper
groups on the acidic surface of Termitomyces clypeatus biomass
(Cu), and lead (Pb) from a mixed solution containing 50 mg/L of
can absorb Cr(VI). Cu(II) removal from wastewater was examined
each metal ion at 95.5 %, 97.7%, and 99.4%, respectively [10].
using unmodified yeast cell biomass of Saccharomyces cerevisiae.
Cladophora fascicularis has a maximal adsorption capacity to Pb(II)
Saccharomyces cerevisiae can remove copper (Cu), zinc (Zn), and
of 198.5 mg/g at pH 5.0. Sargassum sp., a free and immobilized
cadmium (Cd) pollutants in a high-salt environment, and sodium
marine algae, has been demonstrated to have a high ability to
chloride can boost the adsorption ability [13,34].
remove Cu(II) from aqueous solutions. With a very high adsorption
Algae mediated bioremediation capacity of 160 mg/g at pH 4.5, Cystoseira crinitophylla has been
examined for Cu(II) biosorption. Cu(II), Cd(II), and Zn(II) removal
Algae can grow in both freshwater and the ocean as a
capabilities in aqueous solutions have been examined in macro-
photosynthetic organism. Algae are autotrophic, requiring few
algae Saccharina japonica and Sargassum fusiforme. Desmodesmus
nutrients and producing a considerable amount of biomass when
sp., a green microalga, has been used to bioremediate Cu(II) and
compared to other microbial biosorbents. They have a high sorption
Ni(II) from wastewater at a high capacity [34]. Metal-binding
capacity and can be found in considerable quantities [3]. Metal ion
phytochelatins and polyphosphate bodies are produced by
binding sites may exist in certain polysaccharides found in algal
macroalgae and are responsible for their high metal tolerance or
cell walls. Algae cell walls contain polysaccharides that contain
metal ion sequestration in storage vacuoles [24,27].
Adsorption capacity
Microbial group Biosorbents Target metals Reference
(mg/g)
Pseudomonas aeruginosa Hg(II) 180 [34]
Bacillus cereus Cd(II) 31.9 [34]
Staphylococcus epidermidis Cr(VI) 56 [34]
Bacillus licheniformis Cr(VI) 62 [11]
Enterobacter sp. Cd(II) 46.2 [11]
Bacteria Bacillus coagulans, Bacillus
Cr(VI) 39.9 [11]
megaterium
Bacillus firmus Pb(II), Cu(II), Zn(II) 467, 381, 418 [11]
Enterobacter cloacae Pb(II) 2.3 [11]
Micrococcus luteus Cu(II), Pb(II) 408, 1965 [11]
Arthrobacter viscosus Cr(VI) 1161 [34]
Citation: Sarita Sharma., et al. “Application of Microorganisms for Bioremediation of Heavy Metals". Acta Scientific Environmental Science 1.1 (2022):
01-09.
Application of Microorganisms for Bioremediation of Heavy Metals
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the necessary assets to finish this task.
Citation: Sarita Sharma., et al. “Application of Microorganisms for Bioremediation of Heavy Metals". Acta Scientific Environmental Science 1.1 (2022):
01-09.
Application of Microorganisms for Bioremediation of Heavy Metals
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Application of Microorganisms for Bioremediation of Heavy Metals
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Citation: Sarita Sharma., et al. “Application of Microorganisms for Bioremediation of Heavy Metals". Acta Scientific Environmental Science 1.1 (2022):
01-09.