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Mbe 07 0371 File006 - msm187

The document presents data on Y-chromosome diversity from populations in mainland New Guinea and surrounding islands, and East/Southeast Asia and Polynesia. It includes tables showing for each population studied: the sample size, number of Y-SNP haplogroups identified, haplogroup diversity estimate, number of Y-STR haplotypes identified, and Y-STR haplotype diversity estimate. Sources of the data from previous studies are also provided.

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22 views3 pages

Mbe 07 0371 File006 - msm187

The document presents data on Y-chromosome diversity from populations in mainland New Guinea and surrounding islands, and East/Southeast Asia and Polynesia. It includes tables showing for each population studied: the sample size, number of Y-SNP haplogroups identified, haplogroup diversity estimate, number of Y-STR haplotypes identified, and Y-STR haplotype diversity estimate. Sources of the data from previous studies are also provided.

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rico nekson
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© © All Rights Reserved
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Supplementary material available online only

Table S1 Diversity estimates of the populations studied here and previously in mainland

New Guinea and surrounding islands.

Population Code Na Hgb Hg diversity Htc Ht diversity Study


Karon KAR 22 4 0.7229 ± 0.0416 19 0.9870 ± 0.0175 d

Baham BAH 24 4 0.5833 ± 0.0998 13 0.8804 ± 0.0556 d

Biak BIK 10 3 0.5111 ± 0.1643 10 1.0000 ± 0.0447 d

Ekari EKA 19 3 0.4327 ± 0.1167 9 0.7310 ± 0.1090 d

Hatam HAT 12 3 0.4394 ± 0.1581 6 0.8030 ± 0.0959 d

Maibrat MAB 24 3 0.5072 ± 0.0929 18 0.9710 ± 0.0208 d

Mantion MAN 11 3 0.6545 ± 0.1115 7 0.9273 ± 0.0543 d

Moi MOI 8 3 0.7143 ± 0.1227 8 1.0000 ± 0.0625 d

Moskona MSK 10 2 0.5556 ± 0.0745 5 0.8000 ± 0.1001 d

Wandamen WAN 10 3 0.6444 ± 0.1012 9 0.9778 ± 0.0540 d

Irarutu IRA 5 3 0.8000 ± 0.1640 4 0.9000 ± 0.1610 d

Onin ONI 2 2 1.0000 ± 0.5000 2 1.0000 ± 0.5000 d

Tehit TEH 5 1 0 3 0.7000 ± 0.2184 d

Asmat ASM 20 4 0.6053 ± 0.1008 14 0.9632 ± 0.0255 e

Awyu AWY 10 1 0 6 0.8889 ± 0.0754 e

Citak CIT 28 5 0.3836 ± 0.1133 14 0.8598 ± 0.0565 e

Dani DAN 24 2 0.0833 ± 0.0749 7 0.7210 ± 0.0707 e

Ketengban KET 19 1 0 7 0.6082 ± 0.1272 e

Korowai KOR 11 2 0.5455 ± 0.0722 5 0.7091 ± 0.1366 e

Mappi MAP 10 4 0.5333 ± 0.1801 6 0.8444 ± 0.1029 e

Muyu MUY 8 3 0.4643 ± 0.2000 7 0.9643 ± 0.0772 e

Una UNA 46 1 0 11 0.7488 ± 0.0609 e

Yali YAL 5 1 0 3 0.8000 ± 0.1640 e

Kombai KOM 2 2 1.0000 ± 0.5000 2 1.0000 ± 0.5000 e

PNG highlands PHG 31 6 0.6430 ± 0.0640 26 0.9849 ± 0.0134 f


Bereina BRN 35 4 0.5244 ± 0.0810 25 0.9647 ± 0.0201 g

Kapuna KAP 46 3 0.5304 ± 0.0270 21 0.9353 ± 0.0199 g

Tolai New Britain TOL 16 5 0.7750 ± 0.0678 14 0.9833 ± 0.0278 f

Trobriand Islands TRO 31 9 0.8667 ± 0.0356 27 0.9892 ± 0.0119 f

The group “Papua New Guinea coast” was not considered as the various samples come
from different location along the Papua New Guinea coast. a N = sample size; b Hg =
number of Y-SNP haplogroups; c Ht = number of Y-STR haplotypes; d This study; e
(Kayser et al. 2003); f (Kayser et al. 2000a); g (Kayser et al. 2006).
Table S2 Diversity estimates of the populations studied here and previously in East/

South East Asia and Polynesia

Population Na Hgb Hg diversity Htc Ht diversity Study


Arnhem Land 60 5 0.6232 ± 0.0458 42 0.9621 ± 0.0170 f

Great Sandy Desert 35 5 0.5059 ± 0.0902 25 0.9664 ± 0.0198 f

Java 53 10 0.7438 ± 0.0395 38 0.9797 ± 0.0094 f

Moluccas (Hiri and Ternate) 34 7 0.8485 ± 0.0231 21 0.9608 ± 0.0168 f

Philippines 39 8 0.7072 ± 0.0476 24 0.9447 ± 0.0226 f

South Borneo 40 12 0.8218 ± 0.0470 38 0.9974 ± 0.0063 f

Nusa Tenggara 31 9 0.8301 ± 0.0421 30 0.9978 ± 0.0089 f

Sumatra 56 11 0.8545 ± 0.0257 44 0.9903 ± 0.0057 g

Malay 18 8 0.8889 ± 0.0465 18 1.0000 ± 0.0185 f

China 36 6 0.7667 ± 0.0424 34 0.9968 ± 0.0075 f

Korea 25 9 0.8400 ± 0.0488 24 0.9967 ± 0.0125 f

Taiwan Aborigines 43 5 0.3699 ± 0.0905 28 0.9745 ± 0.0108 f

Taiwan Chinese 26 6 0.7938 ± 0.0391 24 0.9938 ± 0.0126 f

Vietnam 10 4 0.7333 ± 0.1005 10 1.0000 ± 0.0447 f

Cook 94 6 0.3551 ± 0.0613 27 0.8877 ± 0.0237 f, g

Futuna 50 6 0.7176 ± 0.0385 13 0.8171 ± 0.0401 g

Fiji 94 12 0.8346 ± 0.0218 55 0.9751 ± 0.0068 g

Niue 9 1 0 2 0.3889 ± 0.1644 g

Tokelau 6 3 0.7333 ± 0.1552 5 0.9333 ± 0.1217 g

Tonga 28 6 0.7143 ± 0.0553 17 0.9127 ± 0.0431 g

Tuvalu 100 6 0.6788 ± 0.0236 25 0.9067 ± 0.0167 g

West Samoa 61 12 0.6235 ± 0.0643 28 0.9022 ± 0.0285 g

a
N = sample size; b Hg = number of Y-SNP haplogroups; c Ht = number of Y-STR
haplotypes; f (Kayser et al. 2000a); g (Kayser et al. 2006).

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