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Role of SMC 4 in Condensin Complex

SMC 4 is a protein that is part of the condensin complex, which condenses DNA into a compact form during cell division. It is most strongly expressed during the G2/M phase when chromatin condensation occurs. SMC 4 can associate with either condensin I or II, localizing to different areas of the cell during the cell cycle. SMC 4 is modified by various proteins including PLK1 to regulate its functions in chromosome condensation and segregation. While SMC 4 is conserved between yeast and humans, it carries out some different roles due to divergent evolution.

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0% found this document useful (0 votes)
115 views10 pages

Role of SMC 4 in Condensin Complex

SMC 4 is a protein that is part of the condensin complex, which condenses DNA into a compact form during cell division. It is most strongly expressed during the G2/M phase when chromatin condensation occurs. SMC 4 can associate with either condensin I or II, localizing to different areas of the cell during the cell cycle. SMC 4 is modified by various proteins including PLK1 to regulate its functions in chromosome condensation and segregation. While SMC 4 is conserved between yeast and humans, it carries out some different roles due to divergent evolution.

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Nigel Odhiambo
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Nigel Odhiambo Ojuang

261117704
21st November 2022

Structural Maintenance of Chromosomes Protein 4 (SMC 4)

1. Part of the conserved group of proteins that are the SMCs (Structural Maintenance of
Chromosomes), SMC 4 is a very important protein in the cell cycle. It is found in the
condensin complex along with other proteins that make up the complex. Not many
specifics are known about how these SMCs condense proteins, however, a few
experiments have been done to give us some idea of what is taking place. As an
individual protein, SMC 4, along with the assistance of ATP, coils and bends which in
turn causes the DNA to condense into a more suitable form for mitosis. (Kim and Lopero)
However, the SMC is found in a complex with other proteins and therefore works
together with SMC 2 and other non-SMCs to condense DNA. The complex forms
clusters (potentially multiple) in the presence of topoisomerase I which makes the DNA
coil up and become more compact. The complex is also responsible for converting nicked
forms or DNA into positive knotted forms in the presence of topoisomerase II. (UniProt).
From this description, we can see that SMC 4 is linked to the cell cycle through its
association to the condensin complex which gets DNA ready for mitosis.

Cluster formation by condensin complex


2. According to the cycle base website, the SMC 4 gene is mostly expressed in the G2/M to
M phase of the cell cycle. This is consistent with what we believe its function is which is
assisting in the condensing of DNA from its interphase form. It starts getting recruited in
the transition phase into mitosis, serves its function and then we see a steady decline in its
expression after the metaphase. However, we see a sudden increase in the amount of
SMC 4 in the cell when we get back to G1 even though the mitotic portion of the cell
cycle is complete. Upon research, we find that deposition of a histone H3 variant/CENP-
A into centromeric chromatin (centromeres) happens separately from DNA replication.
This causes the condensin II to be called upon (contains SMC 4), with the help of a factor
named HJURP, loads the CENP-A into the centromeres during G1. All this is possible
because condensin II is localized in the nucleus throughout the cell cycle. (Barnhart-
Daily et al).Outside the loading the CENP-A, M-Cdk is a mediator of condensin II as it
activates it (also mediates the removal of another SMC structure, cohesion). We see proof
of this as SMC 4 and M-Cdk are expressed at the same time except at G1 (M-Cdk is not
used for mediation next to centromeres).

Expression of SMC 4 in the cell cycle


Expression of M-Cdk in the cell cycle
[Link] SMC 4 is used by both condensin I and II, it is localised at two different points in
the cell in certain instances. During the S phase since the nuclear envelope has not yet
been broken, the SMC 4 that is localized in the nucleus next to the kinetochore belongs to
condensin II since it is always localized in the nucleus. (SophieBachellier et al.) It is not
being expressed strongly at this point. However, in the G2/M phase, the expression of
SMC 4 starts to rise and condensin I is called upon by the cell as well from the cytoplasm
where it was from the S phase. Once the wall of the nucleus comes apart, all the SMC 4
in the cell is localised at the nucleus. This is in line with the function SMC 4 which is
condensation of proteins for mitosis and that takes place in the nucleus. After the
chromatin has been condensed and the mitosis portion of the cell cycle is about almost
done, we see that SMC 4 is started to be expressed at a lesser degree meaning it is no
longer needed by chromatin. At this point, condensin I moves back to the cytoplasm
while condensin II stays in the nucleus meaning SMC 4 is being expressed in two areas
of the cell once again. The ability of the cell to deposit CENP-A in the centromeric
chromatin is due to SMC 4 constantly being localized in the nucleus. (Barnhart-Daily et
al).

Representation of SMC 4 during mitosis (black denoting no presence of SMC 4). If we focus on
the blue, we see the concentration of SMC 4 drops in the cytoplasm as it rises in the nucleus and
vice versa.(Walther, N et al)
Condensin, I marked in green and condensin II marked in red showing that SMC 4 is expressed
in 2 parts of the cell.(Research gate)
[Link] 4 experiences cell cycle regulated modification due to one of the three modifications that
happens upstream of the protein is by PLK1(Serine/Threonine protein kinase PLK1). PLK1 is a
multi-purpose protein that is important in the M phase of the cell cycle as it facilitates or at least
aids in actions such as the regulation of centrosome maturation and spindle assembly, the
removal of cohesins from chromosome arms, the inactivation of anaphase-promoting
complex/cyclosome (APC/C) inhibitors, the regulation of mitotic exit and cytokinesis etc. In the
context of SMC 4 and the condensin complexes, we can hypothesize that PLK1 aids in stopping
aberrant chromatid separation. The aberrant chromosome separation can be triggered by
phosphorylated mutants of condensin (phosphorylated subunits of condensin). (Kumar, S et al.)
Therefore, the PLK-1 interacting checkpoint Helicase (PICH), which is a substrate of PLK1 on
the kinetochore causes PLK to bind which keeps the chromatids stable during metaphase. (Dutta,
A et al.)

Modification proteins of SMC 4


[Link] the blast that was carried out on SMC 4 comparing it to the yeast genome, we discover
that we only get about a 37% identity as our highest match but have more or less the same main
function in both organisms (DNA folding). However, the folding of chromosomes in yeast
happens at a lesser degree due to mitosis being endonuclear. (SophieBallachier et al.). They
share 5 out of 6 conserved protein domains which shows a similar ancestor or convergent
evolution (Homologs) . The one protein that is not conserved does lead to a divergence in some
of their functions. Yeast is lacking the PRK03918 which is used in DNA repair while Human
SMC 4 is lacking the PRK01156 which is used for provisional segregation (done by
microtubules in human cells). Therefore, we can conclude that SMC 4 in humans does not
participate in provisional segregation while SMC 4 in budding yeast does not participate in DNA
repair which may contribute to a lower percent identity.

Conserved domains in homo sapiens

Conserved proteins in budding yeast


Top hits from blast

Citation:

[Link] website fallback message. UniProt. (n.d.). Retrieved November 21, 2022, from
[Link]

2. Kim, H. J., & Loparo, J. J. (2016, January 4). Multistep Assembly of DNA condensation
clusters by SMC. Nature News. Retrieved November 21, 2022, from
[Link]

3. Barnhart-Dailey, M. C., Trivedi, P., Stukenberg, P. T., & Foltz, D. R. (2017, January
1). HJURP interaction with the condensin II complex during G1 promotes CENP-A
Deposition. Molecular biology of the cell. Retrieved November 21, 2022, from
[Link]

4., SophieBachellier-BassiaPersonEnvelope, a, Olivier Gadala1, 1, Gaëllen Bourouta, Ulf


Nehrbassb, (2008, January 11). Cell cycle-dependent kinetochore localization of
condensin complex in saccharomyces cerevisiae. Journal of Structural Biology. Retrieved
November 21, 2022, from
[Link]

5. Dutta, A., Das, A., Bisht, D., Arya, V., & Muthuswami, R. (2022, October 18). PLK-1
interacting checkpoint helicase, Pich, mediates cellular oxidative stress response. MDPI.
Retrieved November 21, 2022, from [Link]
6. Kumar, S., Sharma, G., Chakraborty, C., Sharma, A. R., & Kim, J. (2017, June 6). Regulatory
functional territory of PLK-1 and their substrates beyond mitosis. Oncotarget. Retrieved
November 21, 2022, from [Link]

Pictures:

1. Kim, H. J., & Loparo, J. J. (2016, January 4). Multistep Assembly of DNA condensation
clusters by SMC. Nature News. Retrieved November 21, 2022, from
[Link]

[Link], N., Hossain, M. J., Politi, A. Z., Koch, B., Kueblbeck, M., Ødegård-Fougner, Ø.,
Lampe, M., & Ellenberg, J. (2018, July 2). A quantitative map of human condensins provides
new insights into mitotic chromosome architecture. Journal of Cell Biology. Retrieved November
21, 2022, from [Link]
Condensins-provides

[Link] of condensins I and II during the cell cycle. (a) hela ... (n.d.). Retrieved November
21, 2022, from [Link]
the-cell-cycle-A-HeLa-cells-were-fixed-with_fig4_8560213

Common questions

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SMC 4 is integral to CENP-A deposition at centromeres during G1, a process separate from DNA replication. This deposition, mediated by the condensin II complex and facilitated by HJURP, is critical for centromere function and stability throughout mitosis. As CENP-A is critical for kinetochore assembly and function, this role of SMC 4 ensures proper chromosome segregation, emphasizing its broader importance in maintaining genomic integrity across cell divisions .

Condensin clusters, facilitated by SMC 4, are crucial for DNA condensation. These clusters form in response to topoisomerase activity, promoting the coiling and compaction of DNA necessary for mitosis. The process is regulated cell cycle-specifically, with the formation and dissolution of clusters controlled by phase transitions, particularly marked by increased SMC 4 expression in G2/M, and modulated by key regulators like M-Cdk and PLK1, which influence condensin activity and complex integrity .

Human SMC 4 and yeast orthologs have similar DNA folding functions but differ in domains affecting their roles. Human SMC 4 lacks the yeast PRK01156, critical for provisional segregation, while yeast lacks the human PRK03918 needed for DNA repair, likely contributing to their 37% identity from a functional blast analysis. These differences suggest evolutionary divergence and specialization, with conserved domains pointing to a common ancestor or convergent evolution, while absent domains reflect distinct evolutionary pressures and adaptations affecting cellular processes like DNA repair and segregation .

SMC 4 is a crucial component of the condensin complex that facilitates the condensation of DNA through its coiling and bending actions, aided by ATP, making DNA ready for mitosis. The protein works in tandem with SMC 2 and other proteins in the complex, condensing DNA primarily during the G2/M to M phase of the cell cycle. ATP assists SMC 4 in coiling and bending, which is vital for converting DNA to a more compact form suitable for mitosis .

PLK1, a serine/threonine kinase, modifies SMC 4 (among other proteins) during mitosis. These post-translational modifications help regulate processes like centrosome maturation and spindle assembly, essential for chromatid stability. Specifically, PLK1 interacts via the PLK1-interacting checkpoint helicase (PICH), stabilizing chromatids during metaphase. This interaction prevents aberrant chromatid separation, highlighting PLK1's role in safeguarding chromosomal integrity through the regulatory control of condensin complexes involving SMC 4 .

The condensin complexes, which include SMC 4, interact with topoisomerases to alter DNA configuration. Condensin, in the presence of topoisomerase I, helps coil DNA into more compact forms, while in the presence of topoisomerase II, it transforms nicked DNA into positively knotted forms. These alterations are critical during the cell cycle, particularly for ensuring the proper condensation and separation of chromosomes during mitosis .

The distinct localization changes of condensins during mitosis impact their functional roles significantly. Condensin II, constantly nuclear, ensures readiness for chromosome condensation, while condensin I, cytoplasmic until G2/M, enters the nucleus post-nuclear envelope breakdown. These movements allow SMC 4 to participate in chromatin condensation and CENP-A loading during G1. Their strategic localization is critical for proper chromosomal architecture formation and segregation, reflecting an efficient cellular mechanism optimizing the structural reorganization necessary for mitosis .

SMC 4 is implicated in centromere function through its role in the condensin II complex, crucial for CENP-A deposition in centromeric chromatin during G1. This function, separate from chromatin condensation, is vital for maintaining centromere structure and facilitating kinetochore function during mitosis. The capacity for SMC 4 to localize within the nucleus throughout the cycle underlies its role in these critical functions, impacting chromosome stability and offering insight into the regulatory complexity essential for cycle fidelity .

During metaphase, SMC 4, within condensin complexes, facilitates chromatid separation by ensuring proper chromosome condensation. PLK1, interacting with the complex, phosphorylates specific sites, maintaining chromatid cohesion and stability. Checkpoints involving PLK1, notably PLK1-interacting checkpoint helicase (PICH), bind on the kinetochores to prevent premature separation. These interactions are crucial for accurate chromatid disjunction, underscoring the importance of precise regulation and checkpoint controls to maintain genomic integrity during cell division .

SMC 4 expression is highest during the G2/M to M phase, corresponding to its role in DNA condensation for mitosis. Localization of SMC 4 changes throughout the cell cycle: it remains in the nucleus associated with condensin II during the S phase but redistributes when the nuclear envelope disassembles. During late mitosis, SMC 4 expression decreases, indicating its reduced necessity post-chromatin condensation. Condensin I returns to the cytoplasm, while condensin II, with SMC 4, stays nuclear .

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