Basic Shell Scripting

Zach Byerly
HPC User Services
LSU HPC & LONI
[email protected]

Louisiana State University

Baton Rouge
September 23, 2020
 Outline

• Introduction to Linux Shell

• Shell Scripting Basics
• Variables/Special Characters
• Arithmetic Operations
• Arrays
• Beyond Basic Shell Scripting
– Flow Control
– Functions
• Advanced Text Processing Commands
(grep, sed, awk)

Basic Shell Scripting 2

Linux System Architecture

Basic Shell Scripting 3

 What is a Linux Shell
▪ An application running on top of the kernel and provides a
command line interface to the system
▪ Process user’s commands, gather input from user and execute programs
▪ Types of shell with varied features
o sh
o the original Bourne shell.
o ksh
o one of the three: Public domain ksh (pdksh), AT&T ksh or mksh
o bash
o the GNU Bourne-again shell. It is mostly Bourne-compatible, mostly
POSIX-compatible, and has other useful extensions. It is the default on
most Linux systems.
o csh
o BSD introduced the C shell, which sometimes resembles slightly the C
programming language.
o tcsh
o csh with more features. csh and tcsh shells are NOT Bourne-
compatible.

Basic Shell Scripting 4

 Shell Comparison

Software sh csh ksh bash tcsh

Programming language y y y y y
Shell variables y y y y y
Command alias n y y y y
Command history n y y y y
Filename autocompletion n y* y* y y
Command line editing n n y* y y
Job control n y y y y

*: not by default

http://www.cis.rit.edu/class/simg211/unixintro/Shell.html

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 What can you do with a shell?
▪ Check the current shell you are using
▪ echo $0
▪ List available shells on the system
▪ cat /etc/shells
▪ Change to another shell
▪ csh
▪ Date
▪ date
▪ wget: get online files
▪ wget https://ftp.gnu.org/gnu/gcc/gcc-7.1.0/gcc-7.1.0.tar.gz
▪ Compile and run applications
▪ gcc hello.c –o hello
▪ ./hello
▪ What we need to learn today?
o Automation of an entire script of commands!
o Use the shell script to run jobs – Write job scripts

Basic Shell Scripting 6

 Shell Scripting
▪ Script: a program written for a software environment to automate
execution of tasks
▪ A series of shell commands put together in a file
▪ When the script is executed, those commands will be executed
one line at a time automatically
▪ Shell script is interpreted, not compiled.

▪ The majority of script programs are “quick and dirty”, where the main
goal is to get the program written quickly
▪ May not be as efficient as programs written in C and Fortran

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 When NOT to use Shell Scripting…
▪ Selected situations:
o Resource-intensive tasks, especially where speed is a factor
(sorting, hashing, recursion [2] ...)
o Procedures involving heavy-duty math operations, especially
floating point arithmetic, arbitrary precision calculations, or
complex numbers (use C++ or FORTRAN instead)
o Complex applications, where structured programming is a
necessity (type-checking of variables, function prototypes, etc.)
o Extensive file operations required (Bash is limited to serial file
access, and that only in a particularly clumsy and inefficient line-
by-line fashion.)
o Need native support for multi-dimensional arrays, data structures,
such as linked lists or trees
o Need to use libraries or interface with legacy code

Basic Shell Scripting 8

 Script Example (~/.bashrc)
# .bashrc

# Source global definitions

if [ -f /etc/bashrc ]; then
. /etc/bashrc
fi

# User specific aliases and functions

export PATH=$HOME/packages/bin:$PATH
export LD_LIBRARY_PATH=$HOME/packages/lib:$LD_LIBRARY_PATH
alias qsubI="qsub -I -X -l nodes=1:ppn=20 -l walltime=01:00:00
–A my_allocation"
alias lh="ls -altrh"

Basic Shell Scripting 9

 Hello World
#!/bin/bash
# A script example
echo "Hello World!" # print something

1. #!: "Shebang” line to instruct which interpreter to use.

In the current example, bash. For tcsh, it would be: #!/
bin/tcsh
2. All comments begin with "#".
3. Print "Hello World!" to the screen.

[fchen14@mike1 shelltut]$ ./hello_world.sh # using default /bin/bash

Hello World!
[fchen14@mike1 shelltut]$ bash hello_world.sh # using bash to run the
script
Hello World!

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 Interactive and non-interactive shells
• An interactive shell is one started without non-option arguments, unless -s is
specified, without specifying the -c option, and whose input and error output
are both connected to terminals or one started with the -i option.
o The user can interact with the shell from the terminal.
o e.g., open an interactive shell by typing bash or ssh from the terminal
• A shell running a script is always a non-interactive shell.
o All the same, the script can still access its tty. It is even possible to
emulate an interactive shell in a script.

o Test whether you are using an interactive shell using $- (prints The current
set of options in your current shell.)
[fchen14@mike1 shelltut]$ echo $-
himBH
[fchen14@mike1 shelltut]$ cat checkshell.sh
#!/bin/bash
# read value # you can still interact with the script
echo $-
[fchen14@mike1 shelltut]$ ./checkshell.sh
hB
 Subshell
o Definition:
o A subshell is a child process launched by a shell (or shell script).
o Just as your commands are interpreted at the command-line prompt,
similarly does a script batch-process a list of commands.
o Each shell script running is, in effect, a subprocess (child process) of
the parent shell.
o Two typical examples of starting subshell:
o Running a shell script launches a new process, a subshell.
o Type “bash” from an interactive shell
 Outline

• Introduction to Linux Shell

• Shell Scripting Basics
• Variables/Special Characters
• Arithmetic Operations
• Beyond Basic Shell Scripting
• Control flow
• Functions
• Advanced Text Processing Commands
(grep, sed, awk)

Basic Shell Scripting 13

 Variables
▪ Variable names
▪ Must start with a letter or underscore
▪ Number can be used anywhere else
▪ Do not use special characters such as @,#,%,$
▪ Case sensitive
▪ Allowed: VARIABLE, VAR1234able, var_name, _VAR
▪ Not allowed: 1var, %name, $myvar, var@NAME,
myvar-1
▪ To reference a variable, prepend $ to the name of the variable
▪ Example: $PATH, $LD_LIBRARY_PATH, $myvar etc.

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 Global and Local Variables
▪ Two types of variables:
▪ Global (Environmental) variables
o Inherited by subshells (child process, see next slide)
o provide a simple way to share configuration settings
between multiple applications and processes in Linux
o Using all uppercase letters by convention
o Example: PATH, LD_LIBRARY_PATH, DISPLAY etc.
o printenv/env list the current environmental variables
in your system.

▪ Local (shell) variables

o Only visible to the current shell
o Not inherited by subshells

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 Editing Variables
▪ Local (Shell) variables is only valid within the current shell, while
Typeenvironment variables are valid for all subsequently
sh/ksh/bash opened shells.
csh/tcsh
▪ Example: useful when
Shell (local)
running a script, where
name=value exported
set variables
name=value
(global) at the terminal can be inherited within the script.
Environment (global) export name=value setenv name value

With export Without export

$ export v1=one $ v1=one
$ bash $ bash
$ echo $v1 $ echo $v1
!one !

Basic Shell Scripting 16

 Global and Local Variables
- current shell and subshell
Type bash or call
Current Shell another script

visible Sub Shell

export VARC=XX
export VARS=YY
echo $VARC
echo $VARS
i sib le
* v
echo $VARC *not
echo $VARS

Exit the Sub Shell

Basic Shell Scripting 17

 How to inherit the variables in the script?
• Using the source command, it has a synonym in dot “.” (period)
o Syntax:
. filename [arguments]
source filename [arguments]
o The script does not need execute permission in this case. Commands
are executed in the current shell process, so any changes made to your
environment will be visible when the script finishes execution.
o Executing will run the commands in a new shell process (subshell).

[fchen14@mike1 shelltut]$ cat source_var.sh

#!/bin/bash
export myvar="newvalue"
[fchen14@mike1 shelltut]$ bash source_var.sh
[fchen14@mike1 shelltut]$ echo $myvar

[fchen14@mike1 shelltut]$ source source_var.sh

[fchen14@mike1 shelltut]$ echo $myvar
newvalue
 List of Some Environment Variables
PATH A list of directory paths which will be searched when a command is issued

LD_LIBRARY_PATH colon-separated set of directories where libraries should be searched for first

HOME indicate where a user's home directory is located in the file system.

PWD contains path to current working directory.

OLDPWD contains path to previous working directory.

TERM specifies the type of computer terminal or terminal emulator being used

SHELL contains name of the running, interactive shell.

PS1 default command prompt

PS2 Secondary command prompt

HOSTNAME The systems host name

USER Current logged in user's name

DISPLAY Network name of the X11 display to connect to, if available.

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 Quotations
• Single quotation
– Enclosing characters in single quotes (')
preserves the literal value of each character within
the quotes. A single quote may not occur between
single quotes, even when preceded by a backslash.
• Double quotation
– Enclosing characters in double quotes (")
preserves the literal value of all characters within
the quotes, with the exception of ‘$’, ‘`’, ‘\’
• Back “quotation?”
– Command substitution (``) allows the output of a
command to replace the command itself, enclosed
string is executed as a command, almost the same
as $()

Basic Shell Scripting 20

 Quotation - Examples
[fchen14@mike1 ~]$ str1='echo $USER'
[fchen14@mike1 ~]$ echo "$str1"
echo $USER
[fchen14@mike1 ~]$ str2="echo $USER"
[fchen14@mike1 ~]$ echo "$str2"
echo fchen14
[fchen14@mike1 ~]$ str3=`echo $USER`
[fchen14@mike1 ~]$ echo $str3
fchen14
[fchen14@mike1 ~]$ str3=$(echo $USER)
[fchen14@mike1 ~]$ echo "$str3"
fchen14

Always use double quotes around variable substitutions and

command substitutions: "$foo", "${foo}"

Basic Shell Scripting 21

 Special Characters (1)

# Start a comment line.

$ Indicate the name of a variable.
\ Escape character to display next character literally
{} Enclose name of variable
Command separator. Permits putting two or more commands on the same
;
line.
;; Terminator in a case option
. “dot” command, equivalent to source (for bash only)
| Pipe: use the output of a command as the input of another one
>
Redirections (0<: standard input; 1>: standard out; 2>: standard error)
<

Basic Shell Scripting 22

 Special Characters (2)

$? Exit status for the last command, 0 is success, failure otherwise

$$ Process ID variable.
[] Test expression, eg. if condition
[[ ]] Extended test expression, more flexible than [ ]
$[], $ Integer expansion
(( ))
||, &&, ! Logical OR, AND and NOT

Basic Shell Scripting 23

 Outline

• Introduction to Linux Shell

• Shell Scripting Basics
• Variables/Special Characters
• Arithmetic Operations
• Beyond Basic Shell Scripting
– Arrays
– Flow Control
– Functions
• Advanced Text Processing Commands
(grep, sed, awk)

Basic Shell Scripting 24

 Integer Arithmetic Operations

Operation Operator
Addition +
Subtraction -
Multiplication *
Division /
Exponentiation ** (bash only)
Modulo %

Basic Shell Scripting 25

 Integer Arithmetic Operations
▪ $((...)) or $[...] commands
o x=$((1+2)) # Addition, suggested
o echo $[$x*$x] # Multiplication, deprecated
▪ let command:
o let c=$x+$x # no space
o let c=x+x # you can omit the $ sign
o let c="x + x" # can have space
o let c+=1 or let --c # C-style increment operator
▪ expr command:
o expr 10 / 2 (space required)

Note: Bash is picky about spaces!

Basic Shell Scripting 26

 Floating-Point
Arithmetic Operations
GNU basic calculator (bc) external calculator
▪ Add two numbers
echo "3.8 + 4.2" | bc
▪ Divide two numbers and print result with a precision of 5
digits:
echo "scale=5; 2/5" | bc
▪ Convert between decimal and binary numbers
echo "ibase=10; obase=2; 10" |bc
▪ Call bc directly:
bc <<< "scale=5; sqrt(2)"

Basic Shell Scripting 27

 Outline

• Introduction to Linux Shell

• Shell Scripting Basics
– Variables
– Quotations
– Arithmetic Operations
– Arrays
• Beyond Basic Shell Scripting
– Flow Control
– Command Line Arguments
– Functions
• Advanced Text Processing Commands (grep,
sed, awk)

Basic Shell Scripting 28

 Arrays Operations (1)
• Initialization
my_array=("Alice" "Bill" "Cox” "David")
my_array[0]="Alice";
my_array[1]="Bill”
• Bash supports one-dimensional arrays
• Index starts at 0
• No space around “=“
• Reference an element
${my_array[i]} # must include curly braces
{}
• Print the whole array
${my_array[@]}
• Length of array
${#my_array[@]}

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 Array Operations (2)

• Add an element to an existing array

• my_array=(first ${my_array[@]})
• my_array=("${my_array[@]}" last)
• my_array[4]=(“Nason”)

• Copy the current array to a new array

• new_array=(${my_array[@]})

• Concatenate two arrays

• two_arrays=(${my_array[@]} ${new_array[@]})

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 Array Operations (3)

• Delete the entire array

• unset my_array

• Delete an element to an existing array

• unset my_array[0]

Basic Shell Scripting 31

 Outline

• Introduction to Linux Shell

• Shell Scripting Basics
– Arrays
– Arithmetic Operations
• Beyond Basic Shell Scripting
– Flow Control
– Functions
• Advanced Text Processing Commands
(grep, sed, awk)

Basic Shell Scripting 32

 Flow Control

• Shell scripting languages execute commands in sequence

similar to programming languages such as C and Fortran
– Control constructs can change the order of command
execution
• Control constructs in bash
– Conditionals:
➢ if-then-else
➢ Switches: case
– Loops: for, while, until

Basic Shell Scripting 33

 if statement
• if/then construct test whether the exit status of a list of
commands is 0, and if so, execute one or more
commands
if [ condition ]; then
Do something
elif [ condition 2 ] ; then
Do something
else
Do something else
fi
• Strict spaces between condition and the brackets (bash)
• [[ condition ]] extended test construct is the more versatile
Bash version of [ condition ], generally safer to use.

Basic Shell Scripting 34

 File Operations

Operation bash
File exists if [ -e test ]
File is a regular file if [ -f test]
File is a directory if [ -d /home ]
File is not zero size if [ -s test ]
File has read permission if [ -r test ]
File has write permission if [ -w test ]
File has execute permission if [ -x test ]

Basic Shell Scripting 35

 Integer Comparisons

Operation bash
Equal to if [ 1 –eq 2 ]
Not equal to if [ $a –ne $b ]
Greater than if [ $a –gt $b ]
Greater than or equal to if [ 1 –ge $b ]
Less than if [ $a –lt 2 ]
Less than or equal to if [ $a –le $b ]

Basic Shell Scripting 36

 String Comparisons

Operation bash
Equal to if [ $a == $b ]
Not equal to if [ $a != $b ]
Zero length or null if [ -z $a ]
Non zero length if [ -n $a ]

Basic Shell Scripting 37

 Logical Operators

Operation Example
! (NOT) if [ ! –e test ]
&& (AND) if [ -f test] && [ -s test ]
if [[ -f test && -s test ]]
if ( -e test && ! –z test )

|| (OR) if [ -f test1 ] || [ -f test2 ]

if [[ -f test1 || -f test2 ]]

Basic Shell Scripting 38

 if condition examples
Example 1:
read input
if [ $input == "hello" ]; then
echo hello;
else echo wrong ;
fi

Example 2
touch test.txt
if [ -e test.txt ]; then
echo “file exist”
elif [ ! -s test.txt ]; then
echo “file empty”;
fi
What happens after
echo “hello world” >> test.txt

Basic Shell Scripting 39

 Loop Constructs

• A loop is a block of code that iterates a list of

commands as long as the loop control condition
stays true
• Loop constructs
for, while and until

Basic Shell Scripting 40

 for loop examples
Exmaple1:
for arg in `seq 1 4`
do
echo $arg;
touch test.$arg
done

How to delete test files using a loop?

rm test.[1-4]

Example 2:
for file in `ls /home/$USER`
do
cat $file
done

Basic Shell Scripting 41

 While Loop

• The while construct test for a condition at the top of a loop

and keeps going as long as that condition is true.
• In contrast to a for loop, a while is used when loop
repetitions is not known beforehand.

read counter
while [ $counter -ge 0 ]
do let counter--
echo $counter
done

Basic Shell Scripting 42

 Until Loop

• The until construct test a condition at the top of a

loop, and stops looping when the condition is met
(opposite of while loop)
read counter
until [ $counter -lt 0 ]
do let counter--
echo $counter
done

Basic Shell Scripting 43

 Switching Constructs - bash
• The case constructs are technically not loops since they do not iterate the
execution of a code block
#!/bin/sh
echo "Please talk to me ..."
while :
do
read INPUT_STRING
case $INPUT_STRING in
hello)
echo "Hello yourself!"
;;
bye)
echo "See you again!"
break
;;
*)
echo "Sorry, I don't understand"
;;
esac
Done
echo "That's all folks!"

Basic Shell Scripting 44

 Outline

• Introduction to Linux Shell

• Shell Scripting Basics
• Beyond Basic Shell Scripting
– Arithmetic Operations
– Arrays
– Flow Control
– Functions
• Advanced Text Processing Commands
(grep, sed, awk)

Basic Shell Scripting 45

 Functions
• A function is a code block that implements a set of
operations. Code reuse by passing parameters,
• Syntax:
function_name () {
command...
}
• By default all variables are global.
• Modifying a variable in a function changes it in the
whole script.
• Create a local variables using the local command,
which is invisible outside the function
local var=value
local varName
Basic Shell Scripting 46
 Pass Arguments to Bash Scripts
• Note the difference between the arguments passed to the
script and the function.
• All parameters can be passed at runtime and accessed via
$1, $2, $3…, add {} when >=10
• $0: the shell script name
• Array variable called FUNCNAME contains the names of
all shell functions currently in the execution call stack.
• $* or $@: all parameters passed to a function
• $#: number of positional parameters passed to the
function
• $?: exist code of last command
• $$: PID of current process

Basic Shell Scripting 47

 Function example
#!/bin/bash

func_add () # define a simple function

{
local x=$1 # 1st argument to the function
local y=$2 # 2nd argument to the function
result=$(( x + y ))
# echo "result is: " $result
}

a=3;b=4
echo "a= $a, b= $b"
result="nothing"
echo "result before calling the function is: " $result
func_add $a $b # note this is arguments to the function
echo "result by passing function arguments is: " $result
func_add $1 $2 # note this is command line arguments
echo "result by passing command line arguments is: "
$result

Basic Shell Scripting 48

 Outline

• Introduction to Linux Shell

• Shell Scripting Basics
– Variables/Special Characters
– Arrays
– Arithmetic Operations
• Beyond Basic Shell Scripting
– Flow Control
– Functions
• Advanced Text Processing Commands
(grep, sed, awk)

Basic Shell Scripting 49

Advanced Text Processing Commands

• grep
• sed
• awk

Basic Shell Scripting 50

 One slide about Regular Expression
• What are Regular Expressions (regex)?
o They describe patterns in strings
o These patterns can be used to modify strings
o Invented by Stephen Cole Kleene
o Idea of RegEx dates back to the 1950s
• Today, they come indifferent “flavors”
• PCRE, POSIX Basic & Extended RegEx, ECMA RegEx and loads more!
• Examples:
 Regex examples
• Anchors - ^ and $
^The matches any string that starts with The
end$ matches a string that ends with end
^The end$ exact string match (starts and ends with The end)
roar matches any string that has the text roar in it
• Quantifiers  -  * + ? and {}
abc* matches a string that has ab followed by zero or more c
abc+ matches a string that has ab followed by one or more c
abc? matches a string that has ab followed by zero or one c
abc{2} matches a string that has ab followed by 2 c
abc{2,} matches a string that has ab followed by 2 or more c
abc{2,5} matches a string that has ab followed by 2 up to 5 c
• OR operator  - | or []
a(b|c) matches a string that has a followed by b or c
a[bc] same as previous
 grep & egrep
• grep: Unix utility that searches a pattern through either information
piped to it or files.
• egrep: extended grep, same as grep –E
• zgrep: compressed files.

• Usage: grep <options> <search pattern> <files>

• Options:
-i ignore case during search
-r,-R search recursively
-v invert match i.e. match everything except pattern
-l list files that match pattern
-L list files that do not match pattern
-n prefix each line of output with the line number within its input file.
-A num print num lines of trailing context after matching lines.
-B num print num lines of leading context before matching lines.

Basic Shell Scripting 53

 grep Examples
• Search files containing the word bash in current directory
grep bash *

• Search files NOT containing the word bash in current directory

grep -v bash *

• Repeat above search using a case insensitive pattern match and

print line number that matches the search pattern
grep -in bash *

• Search files not matching certain name pattern

ls | grep –vi fun

Basic Shell Scripting 54

 grep Examples
100 Thomas Manager Sales $5,000
200 Jason Developer Technology $5,500
300 Raj Sysadmin Technology $7,000
500 Randy Manager Sales $6,000

• grep OR
grep ‘Man\|Sales’ employee.txt
-> 100 Thomas Manager Sales $5,000
300 Raj Sysadmin Technology $7,000
500 Randy Manager Sales $6,000

• grep AND
grep –i ‘sys.*Tech’ employee.txt
-> 100300 Raj Sysadmin Technology $7,000

Basic Shell Scripting 55

 sed
• "stream editor" to parse and transform information
– information piped to it or from files
• line-oriented, operate one line at a time and allow
regular expression matching and substitution.
• S substitution command

Basic Shell Scripting 56

 sed commands and flags
Flags Operation Command Operation
-e combine multiple s substitution
commands
-f read commands from file g global replacement
-h print help info p print
-n disable print i ignore case
-V print version info d delete
-r use extended regex G add newline
w write to file
x exchange pattern with hold
buffer
h copy pattern to hold buffer
; separate commands

Basic Shell Scripting 57

 sed Examples

#!/bin/bash

# My First Script

echo "Hello World!”

Basic Shell Scripting 58

 sed Examples (2)
• Delete blank lines from a file
sed ’/^$/d’ hello.sh

#!/bin/bash
# My First Script
echo "Hello World!"

• Delete line n through m in a file

sed ’2,4d’ hello.sh

#!/bin/bash
echo "Hello World!"

Basic Shell Scripting 59

 sed Examples (1)
• Add flag -e to carry out multiple matches.
cat hello.sh | sed -e ’s/bash/tcsh/g’ -e ’s/First/Second/g’
#!/bin/tcsh
# My Second Script
echo "Hello World!"

• Alternate form
sed ’s/bash/tcsh/g; s/First/Second/g’ hello.sh

#!/bin/tcsh
# My Second Script
echo "Hello World!"

• The default delimiter is slash (/), can be changed

sed ’s:/bin/bash:/bin/tcsh:g’ hello.sh

#!/bin/tcsh
# My First Script
echo "Hello World!"

Basic Shell Scripting 60

 sed Examples (4)
• Replace-in-place with a backup file
sed –i.bak ’/First/Second/i’ hello.sh

• echo with sed

$ echo "shell scripting" | sed "s/[si]/?/g”

$ ?hell ?cr?pt?ng

$ echo "shell scripting 101" | sed "s/[0-9]/#/g”

$ shell scripting ###

Basic Shell Scripting 61

 awk
• The awk text-processing language is useful for tasks such as:
– Tallying information from text files and creating reports from the
results.
– Adding additional functions to text editors like "vi".
– Translating files from one format to another.
– Creating small databases.
– Performing mathematical operations on files of numeric data.
• awk has two faces:
– It is a utility for performing simple text-processing tasks, and
– It is a programming language for performing complex text-
processing tasks.

Basic Shell Scripting 62

 How Does awk Work
• awk reads the file being processed line by line.
• The entire content of each line is split into columns with
space or tab as the delimiter.
• $0 Print the entire line
• $1, $2, $3, ... for each column (if exists)
• NR number of records (lines)
• NF number of fields or columns in the current line.
• By default the field delimiter is space or tab. To change the
field delimiter use the -F<delimiter> command.

Basic Shell Scripting 63

 awk Syntax

awk pattern {action}

pattern decides when action is performed
Actions:
• Most common action: print
• Print file dosum.sh:
awk ’{print $0}’ dosum.sh
• Print line matching files in all .sh files in current directory:
awk ’/bash/{print $0}’ *.sh

Basic Shell Scripting 64

uptime
11:18am up 14 days 0:40, 5 users, load average: 0.15, 0.11,
0.17
uptime | awk ’{print $0}’
11:18am up 14 days 0:40, 5 users, load average: 0.15, 0.11,
0.17
uptime | awk ’{print $1,NF}’
11:18am 12
uptime | awk ’{print NR}’
1
uptime | awk –F, ’{print $1}’
11:18am up 14 days 0:40
for i in $(seq 1 3); do touch file${i}.dat ; done
for i in file* ; do
> prefix=$(echo $i | awk -F. ’{print $1}’)
> suffix=$(echo $i | awk -F. ’{print $NF}’)
> echo $prefix $suffix $i; done
file1 dat file1.dat
file2 dat file2.dat
file3 dat file3.dat

Basic Shell Scripting 65

 Awk Examples
• Print list of files that are bash script files
awk '/^#\!\/bin\/bash/{print $0, FILENAME}’ *
! #!/bin/bash Fun1.sh
#!/bin/bash fun_pam.sh
#!/bin/bash hello.sh
#!/bin/bash parm.sh

• Print extra lines below patterns

awk '/sh/{print;getline;print}' <hello.sh
#!/bin/bash

Basic Shell Scripting 66

 Getting Help
▪ User Guides
▪ LSU HPC: http://www.hpc.lsu.edu/docs/guides.php#hpc
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▪ Documentation: http://www.hpc.lsu.edu/docs
▪ Archived tutorials: http://www.hpc.lsu.edu/training/archive/
tutorials.php
▪ Contact us
▪ Email ticket system: [email protected]
▪ Telephone Help Desk: 225-578-0900

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