Literature Research and Codes
Literature Research and Codes
https://pubmed.ncbi.nlm.nih.gov/34719789/
https://pubmed.ncbi.nlm.nih.gov/35011811/
https://www.thelancet.com/journals/langlo/article/PIIS2214-109X(21)00448-4/fulltext
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7574266/
https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-021-01907-8
https://www.nature.com/articles/s41380-021-01021-4#:~:text=This%20analysis%20showed%20a%20significant,significant%2
https://academic.oup.com/ofid/article/8/2/ofab050/6124100
https://www.nejm.org/doi/pdf/10.1056/NEJMoa2012410?articleTools=true
https://www.nejm.org/doi/pdf/10.1056/NEJMoa2012410?articleTools=true
Concept Set-Option 1
Description Conceptset Domains Excluded Status # of
Hypertension ID and Name Used
HYPERTENS Concepts(16) NA Concept Under research
0
Diabetes ION
[PASC](v1) Concepts NA Construction
Under 0
Chronic Diabetes (v1) (126)
[ITM] COPD Concepts NA Construction
Under 0
obstructive
Obesity Chronic
[CVDT] (103)
Concepts NA Construction
Under 0
Cerebrovascular Obesity
[ITM] (v1) (178)
Concepts NA Construction
Under 0
disease
Cancer Cerebrovasc Concepts
[VSAC] (1,001) NA Construction
Finished 0
Chronic kidney Cancer (v9) Concepts
[CVDT] (3,808) NA Under 0
disease
Mood disorder Chronic
mood- (240)
Concepts(36 NA Construction
Under 0
Anxiety disorder disorder-56
anxiety- 4)
Concepts NA Construction
Under 0
Other psychiatric disorder-125
[HCUP] (131)
Concepts NA Construction
Finished 0
disorder
Asthma Schizophreni
[CVDT] (224)
Concepts NA Under 0
High cholesterol Asthma (v1) (659)
ARIScience - Concepts(22) NA Construction
Under 0
Hyperthyroidism Elevated
ARIScience - Concepts NA Construction
Under 0
Anxiety Hyperthyroid (77)
ARIScience - Concepts NA Construction
Under 1
Arthritis Anxiety - JA (292)
Arthritis_Elixh Concepts NA Construction
Under 2
Depression auser_UC (1,715)
Depression Concepts NA Construction
Under 0
BMI (v1) (23)
ARIScience - Concepts(8) NA Construction
Under 1
Loss of sense of BMI -
HartwickPed - Concepts(13) NA Construction
Under 1
smell
Fatigue College -
ARIScience - Concepts(14 NA Construction
Under 1
Body aches Fatigue
[RP- - JA 0)
Concepts NA Construction
Under 0
Cough 6B45AE]Bod- Concepts
ARIScience (189) NA Construction
Under 1
Subjective fever Cough(v2)
Fever - JA Concepts(94)
(62) NA Construction
Under 1
Loss of appetite 480262980 - Concepts
ARIScience NA Construction
Under 0
Chills Anorexia - JA (15)
hpo_0025143 Concepts NA Construction
Under 0
Shortness of -chills (v1) (3)
ARIScience - Concepts NA Construction
Under 1
breath
Loss of taste Dyspnea
Hartwick - JA (69)
Concepts NA Construction
Under 1
Nausea College - (13)
hp_0002018- Concepts(21) NA Construction
Under 2
Chronic cardiac nausea
[VSAC] (v1) Concepts NA Construction
Finished 0
disease
Uncontrolled Cardiac
[DATOS] (87)
Concepts NA Under 1
hypertension
Chronic kidney Hypertension
[CVDT] (77)
Concepts(24 NA Construction
Under 0
disease
Rheumatological Chronic
RHEUMATO Concepts0) NA Construction
Under 0
disorder
Chronic LOGIC
Other (146)
Concepts NA Construction
Under 1
neurological
Autoimmune Neurological
[VSAC] (154)
Concepts NA Construction
Finished 0
disease
smoking status Autoimmune (223)
smoking (v1) Concepts NA Under 24
chronic kidney 708602015
chronic (96)
Concepts NA Construction
Under 2
disease (CKD)
congestive heart kidney
CONGESTIV (16)
Concepts(33) NA Construction
Under 0
failure [CHF]
malignancy E HEART-
[DATOS Concepts NA Construction
Under 1
ischemic heart Charlson] (4,501)
ischemic_hea Concepts(15 NA Construction
Under 0
disease
diseases of the rt_disease- 9) Construction
circulatory system
diseases of the ARIScience - Concepts NA Under 1
respiratory
neoplasms Respiratory
Malignant (3,822)
Concepts NA Construction
Under 0
diseases of the neoplasms of (18,821) Construction
blood
certainand blood-
disorders disorder of Concepts NA Under 0
involving the
hydroxychloroqui immune
hydroxychlor (1,786)
Concepts NA Construction
Under 0
ne
remdesivir oquine
[CVD]Remde (362)
(v1) Concepts NA Construction
Under 1
azithromycin sivir
N3C (v1) (57)
Concepts NA Construction
Finished 7
tocilizumab Azithromycin Concepts
[DATOS] (2,480) NA Under 1
sarilumab Tocilizumab
Sarilumab (248)
Concepts(20 NA Construction
Under 0
dexamethasone Immunomodu
JAA 1)
Concepts(48 NA Construction
Under 0
lung disease Dexamethaso
ARIScience - 1)Concepts(1,1 NA Construction
Under 1
Statin Lung
ARIScience - 82)
Concepts NA Construction
Under 0
ACE Statin
[DATOS] - JA (21,958)
Concepts NA Construction
Under 1
Steroids ACE (23,132) Construction
DOAC or
Coumadin
Other Antibiotics
bronchiectasis [VSAC] Concepts(19) NA Finished 0
Essential Bronchiectasi
Essential Concepts NA Under 1
hypertension
Transplant Hypertension
ARIScience - (14)
Concepts NA Construction
Under 0
HIV Transplant
[ITM] - (325)
Concepts(25 NA Construction
Under 0
Angina pectoris HIV/AIDs
angina- (v1) 8)
Concepts NA Construction
Under 0
Acute myocardial pectoris-94
[HCUP] (34)
Concepts(10 NA Construction
Finished 0
infarction
Subsequent Acute 6)
myocardial
Certain current [HCUP] Concepts NA Finished 0
complications
Other acute Complication (6,385)
ischemic
Chronic heart Chronic Concepts NA Under 2
ischaemic heart
Cardiomyopathy Ischemic
[CVDT] (181)
Concepts NA Construction
Under 0
Heart failure Cardiomyopa
[ITM] Heart (186)
Concepts NA Construction
Under 0
Acute myocardial Failure
[HCUP](v1) (140) NA Construction
Finished 0
infarction Acute
Concept Set-Option 2 Concept Set-Opti
Conceptset Domains Excluded Status # of Conceptset Domains
ID and Name
ARIScience - Used
Concepts Concept
NA Under research
3 ID and Name
[RHDT] Used
Concepts(76
Hypertension
ARIScience - (508)
Concepts(1,0 NA Construction
Under 2 Hypertension
[N3C] [ISC] 5)
Concepts
Diabetes
Chronic - JA 99)
Concepts NA Construction
Under 0 Diabetes
chronic (v2) (2)
Concepts
obstructive
UVA Obesity (52)
Concepts NA Construction
Under 17 obstructive
[CV]obesity (19)
Concepts
(v2)
[VSAC] (333)
Concepts NA Construction
Finished 0 (v1)
[DATOS - (5)
Concepts
Cerebrovasc
Charlson - (64)
Concepts NA Under 36 Charlson] -
ARIScience (764)
Concepts
Cancer (v1)
Chronic (559)
Concepts NA Construction
Under 1 Cancer - JA
chronic (4,533)
Concepts
kidney
Mood (114)
Concepts NA Construction
Under 1 kidney (110)
Disorder
Anxiety (v1) (363)
Concepts NA Construction
Under 0 UIowa - Concepts
Disorder (v1) (278) Construction Anxiety (131)
asthma (v1) Concepts NA Finished 7 Asthma (v1) Concepts
413507552 (115) 818292046 (115)
NA Under 2
Construction
NA Under 0 N3C Concepts NA N3C
NA Construction
N3C 18 Hydroxychlor (362) Validated
NA Validated
Under 0
NA Construction
Finished 6
NA Finished 9
Concepts NA Under 1
(51) Construction
Concepts NA Under 1
(131) Construction
Concepts NA Under 1
(25) Construction
Concepts NA Under 1
(46) Construction
Concepts NA Under 0
(352) Construction
Concepts NA Under 2
(6,242) Construction
Concepts NA Under 0
(141) Construction
Concept Set-Option 1
Description Conceptset Domains Used Excluded Status # of
Anxiolytic ID and Name Concept research
Charlson index charlson Concepts(1) NA Under 0
OCD comorbidity
Obsessive Concepts(42) NA construction
Under 1
Psychiatric Compulsive construction
accident and
Psychiatric ED
non-
accident and ED
Psychotherapy
referrals
SSRI exposure
Sedative-
hypnotics
anxiety disorders Anxiety Concepts(278) NA Under 0
beta blockers Disorder
[DATOS] (v1) Drug (31,440) NA construction
Under 2
bipolar disorder Beta Blockers
[HCUP] Concepts(146) NA construction
Finished 0
chronic fatigue Bipolar and
syndrome
chronic pain ARIScience - Concepts(169) NA Under 1
eating disorders Chronic Pain- Concepts(38) NA
ARIScience construction
Under 0
weight fluctuation Eating construction
fatigue ARIScience - Fatigue
Concepts(140)
- JA (v3) NA Under Constru 1
lethargy 402442153
hospital
admission for
impulse control [HCUP] Concepts(47) NA Finished 0
disorders
irritability Disruptive,
anger
low income
melancholic
features
opioid and other [RHDT] Concepts(28) NA Under 2
substance use
phobic disorders Opioid Abuse construction
seasonal affective
disorder
tricyclic [DATOS] Concepts(4,290 NA Under 0
antidepressants
ADHD Tricyclic ) construction
BMI ARIScience - BMI
Concepts(8)
- Ped - JA (v2)
NA Under Constru 1
CAD 454694746
CAD ITM (v1) Concepts(312) NA Under 0
PTSD 719610090
PTSD - BCBI Concepts(11) NA construction
Under 1
T2Diabetes (v1)
Type 2 Concepts(17) NA construction
Finished 5
age diabetes
alcoholism alcoholism v2 Concepts(18) NA Under 5
benzodiazepines (v1)
[DATOS] Concepts(4,854 NA construction
Under 0
cancer Benzodiazepi
[VSAC] Cancer)Concepts(3,808)NA
(v9) construction
Finished 0
depression 122145229
Depression (v1)
Concepts(23) NA Under Constru 0
dyslipidemia 148488138 Concepts(17) NA
CardioOnc- Under 1
fibromyalgia Dyslipidemia construction
headache headache-23 Concepts(60) NA Under 0
hypertension (v1)
HYPERTENSION Concepts(16)
(v1) NA construction
Under Constru 0
insomnia 197465109
ARIScience - Concepts(36) NA Under 0
nausea Insomnia - JA Concepts(21)
hp_0002018-nausea (v1) NA construction
Under Constru 2
schizophrenia 1642067
schizophrenia Concepts(47) NA Under 0
sex -46 (v1) construction
smoking smoking (v1) Concepts(96) NA Under 24
stroke 708602015
Charlson - Concepts(107) NA construction
Under 30
venlafaxine Stroke (v1) -
ARIScience Concepts(4,212 NA construction
Under 0
tricyclic Drug
[DATOS] )Concepts(4,290 NA construction
Under 0
antidepressants
Psychotherapy Tricyclic ) construction
referrals
Concept Set-Option 2 Con
Unique Conceptset Domains Excluded Status # of Conceptset
Counts in ID and Name Used Concept research ID and Name
12,029
642,342
19,827
36,441
98,051
Under Constru 1
Under 1 coronary Concepts(15) NA Under 0
construction artery construction
Finished 7 [T2DM]Type Concepts(65 NA Under 0
2 Diabetes 0) construction
[RP-6B45AE]Fatigue
Concepts
(v2) NA Under Constru 1
351910165 (25)
Y Y
Y Y Y
Y Y
Y Y
Y Y
Y
Y
Y
Y
Y
(28 days
Y Y Y Y
Y Y Y Y
Y Y Y
Y Y
Y
Y
Y
Y
Y
Y
Sr no Article Title Link Study type Specific Location Outcomes Measured
Dataset /
Institutio
n
1 Association https://www.nature.com/articles/s41380-021-01021-4
Multicenter AP-HP Paris Lower risk of death or
2 between
Mortality Risk observationa Health Data
Multicenter Cerner Real US intubation
Death in patients
https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2786136
3 Among
OngoingPatients retrospective
Multicenter World Data (across
Use of https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8745642/
Epic EHR US Mortality
4 SSRIs Does Not retrospective
Retrospectiv EHR of (Provide
Fluoxetine use is https://elitmed.hu/en/publications/clinical-neuroscience/fluoxetine-use-is-associated-with-
Hungary Mortality
5 associated with e Case- Uzsoki
DrugWAS: Drug- https://ascpt.onlinelibrary.wiley.com/doi/full/10.1002/cpt.2376
Restrospecti EHR of VUMC, Primary Outcomes:
6 wide Association
Analysis of the ve Study VUMC
Retrospectiv Online US
The ->Death
https://www.cambridge.org/core/journals/bjpsych-open/article/analysis-of-the-impact-of-a
COVID-19 infection (Odds
7 impact of e Cohort medical
Intervention NA Rocklan
Missouri Ratio)
Fluvoxamine vs https://jamanetwork.com/journals/jama/fullarticle/2773108
Primary Outcomes
8 Placebo and
Effect of early al and ->shortness of breath or
https://www.thelancet.com/journals/langlo/article/PIIS2214-109X(21)00448-4/fulltext
Intervention NA Brazil ->Hospitalisation defined
treatment with al as either retention in a
Exposure/ Definition/ Criteria / Definition for Case Variables assessed &
SSRI Drugs Timeframe for use compared
of anti-
depressants or
SSRI
->Fluoxetine Receiving any Inclusion Criteria ->Sex
->Fluvoxamine antidepressant
->Escitalopram At least once ->Adults aged
Inclusion Criteria18 years or over ->Age
->Age
oxalate within a
SSRIs except Use of SSRI period of ->COVID-19 diagnosis
Inclusion criteria: adult ->Sex
-age category
Fluvoxamine
Exposure to during admission
Exposure to patients 18 and
Inclusion Criteria:over admitted -gender
-->anti-COVID-19 drug
fluoxetine adjuvant fluoxetine
58 drugs were Exposure to a -->Results of an
Inclusion Criteria: antigen or combinations
-->Gender (Favipiravir,
selected
Antidepressant drug between
In-patients 3- ->Tested
during Inclusion:covid positive
In-patient of the -->Ethinicity
-->Gender
s
"- including June 2 to 31 July psychiatric center
Inclusion Critera and had -->Ethinicity
->Age
>Fluvoxamine
->Fluvoxamine 28 days post- ->Men and woman
Inclusion Criteria: age 18 and ->Gender
->Age
->Placebo random ->Patients
> older than 18 years ->Gender
Definition of Control
Group
Patients not
receiving anti-
Patients with
COVID-19 and18
Adult patients no
and overwho
Patients admitted
fit the
inlcusion criteria
Not exposed to the and
mentioned
Those who class
were of
Covid-19 negative
Patients on Placebo
Outcomes CPT code Snomed Code ICD-10 Code
Death
Death 419620001
Accidental Death 7878000
Death due to asphyxiation 74332007
Death in home 4.40081E+14
Death in long term facility 4.40021E+14
Death occuring in less than 24 hrs from onset of symptoms 274639009
Sudden death/Unknown cause R99
Death in hospital in emergency department 4.40041E+14
Hospitalization
Hospitalization in community hospital 305337004
Hospitalization in private hospital 305339001
Hospitalization for day care procedures 305344008
Hospitalization for long duration 305340004
Hospital admission for short term 50699000
Emergency Hospitalization 183452005
Hospitalization for observation 76464004
Hospitalization 99221 32485007
(first encounter between patient and admitting physician)
99222
99223
Subsequent Hospitalizations 99231
99232
99233
Hospitalization and Discharge on same day 99234
Admission to ICU 99235
Description Conceptset ID and Domains Used Excluded Status # of research Conceptset ID and
Name Concept papers used Name
Expressions
405733646,
[HCUP] Bipolar
Bipolar Disorder Condition (146) NA Finished 0
and related
disorders (v1)
894827268
[HCUP] 81854676
Schizophrenia
Schizophrenia Condition (224) NA Finished 0
spectrum and schizophrenia-46 (v1)
other psychotic
disorders (v1)
727648761
439814592
[VSAC] Smoking
Smoking Observation (31) NA Finished 0 [Pitt N3C] Smoking
or Cigarette Use
(v1)
(v2)
341951608 739240275
General Anxiety Condition (272)
Anxiety Disorder NA Underconstruction 0 anxiety-disorder-
Disorder Observation (6)
(v1) 125 (v1)
Psychotherapy
405121773
466714408
[N3C] [ISC] Obesity
[VSAC] Obesity (v2)
Obesity (v1) Condition (19) NA Underconstruction 1
708602015
Observation (4) NA Underconstruction 3 Observation (96)
smoking (v1)
682922728 Condition (268)
Condition(131) NA Underconstruction 0
Anxiety(v4) Observation 4
809298289
NA Underconstruction 0
Depression, Elixhauser (v1)
724900300
NA Underconstruction 24
CardioOnc-Smoking (v1
-Anxiety due to dementia
--Parental anxiety Underconstruction 0 736743636
-Performance anxiety hp_0000739-anxiety (v1)
Concept Set-Option 4
479644615
Condition (22) NA Underconstruction 0
Single episode major depression (v1)
743223706
Condition (165) NA Underconstruction 2
Depression_Elixhauser_UC (v1)
972296545
Condition (131) NA Underconstruction 0
UIowa - Anxiety Disorder (v1)
Concept Set-Option 1
Excluded
Conceptset ID and Domains
ICD-10 Concept
Name Used
Labelled Indications Expressions
Major depressive F32.0, F32.1, 537591858 Conditions None
disorder F32.2, F32.3, (159)
F32.4, F32.5 [HCUP] Depressive
disorders (v1)
Off-Label Indications
Binge eating disorder
Body dysmorphic
disorder
Fibromyalgia
Premature ejaculation
Paraphilias
Autism
Raynaud
phenomenon
associated with
menopause
Concept Set-Option 1 # of
Concept set ID Domains
Status research Relevant Concept IDs
and Name Used
papers used
Finished 1 29772544 Condition
ARIScience - (189)
Depression - JA
Observation
(14)
None Underconstructio 0
None n
Underconstructio 3
n
None Finished 0
None Underconstructio 0
n
Concept Set-Option 3
Excluded # of
Conceptset ID Domains Relevant
Concept Status research
and Name Used Concept IDs
Expressions papers used
148488138 Condition NA Underconstructio 0
Depression (v1) (23) n
4
Relevant
Concept IDs
Concept Set-Option 1
1
Pointers
-SSRIs are used as adjuvant drugs for a few treatments (fibromyalgia and bulimia ner
-The effect of SSRIs may take up to 6 weeks before the patients feel the effects of tr
Source
https://www.sciencedirect.com/science/article/pii/S0048969722017491
https://www.ncbi.nlm.nih.gov/books/NBK554406/