Scribd
Upload
30 views6 pages

Meaningful Predictive Modeling Week-4 Assignment Cancer Disease Prediction

This document analyzes various machine learning algorithms to predict cancer using a cancer dataset with 568 samples. It imports necessary libraries, loads and preprocesses the dataset, splits it into training and test sets, trains 7 different classifiers (Logistic Regression, KNN, Linear SVM, RBF SVM, Naive Bayes, Decision Tree, Random Forest), makes predictions on the test set, calculates accuracy scores, and plots the results. The Logistic Regression model achieved the highest accuracy of 97.88% while the Decision Tree model had the lowest accuracy of 90.14%.

Uploaded by

frankh
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
30 views6 pages

Meaningful Predictive Modeling Week-4 Assignment Cancer Disease Prediction

This document analyzes various machine learning algorithms to predict cancer using a cancer dataset with 568 samples. It imports necessary libraries, loads and preprocesses the dataset, splits it into training and test sets, trains 7 different classifiers (Logistic Regression, KNN, Linear SVM, RBF SVM, Naive Bayes, Decision Tree, Random Forest), makes predictions on the test set, calculates accuracy scores, and plots the results. The Logistic Regression model achieved the highest accuracy of 97.88% while the Decision Tree model had the lowest accuracy of 90.14%.

Uploaded by

frankh
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as PDF, TXT or read online on Scribd
You are on page 1/ 6

10/8/2020 Cancer

Meaningful Predictive Modeling Week-4 Assignment


CANCER DISEASE PREDICTION
In [1]:

#importing the libraries


import numpy as np
import matplotlib.pyplot as plt
import pandas as pd

In [16]:

#importing our cancer dataset


dataset = pd.read_csv('cancer.csv')
X = dataset.iloc[:, 2:31].values
Y = dataset.iloc[:, 1].values

In [17]:

dataset.head()

Out[17]:

842302 M 17.99 10.38 122.8 1001 0.1184 0.2776 0.3001 0.1471 ... 25.38

0 842517 M 20.57 17.77 132.90 1326.0 0.08474 0.07864 0.0869 0.07017 ... 24.99 2

1 84300903 M 19.69 21.25 130.00 1203.0 0.10960 0.15990 0.1974 0.12790 ... 23.57 2

2 84348301 M 11.42 20.38 77.58 386.1 0.14250 0.28390 0.2414 0.10520 ... 14.91 2

3 84358402 M 20.29 14.34 135.10 1297.0 0.10030 0.13280 0.1980 0.10430 ... 22.54

4 843786 M 12.45 15.70 82.57 477.1 0.12780 0.17000 0.1578 0.08089 ... 15.47 2

5 rows × 32 columns

In [18]:

print("Cancer data set dimensions : {}".format(dataset.shape))

Cancer data set dimensions : (568, 32)

localhost:8888/nbconvert/html/Desktop/Cancer.ipynb?download=false 1/6
10/8/2020 Cancer

In [19]:

dataset.isnull().sum()
dataset.isna().sum()

Out[19]:

842302 0
M 0
17.99 0
10.38 0
122.8 0
1001 0
0.1184 0
0.2776 0
0.3001 0
0.1471 0
0.2419 0
0.07871 0
1.095 0
0.9053 0
8.589 0
153.4 0
0.006399 0
0.04904 0
0.05373 0
0.01587 0
0.03003 0
0.006193 0
25.38 0
17.33 0
184.6 0
2019 0
0.1622 0
0.6656 0
0.7119 0
0.2654 0
0.4601 0
0.1189 0
dtype: int64

In [20]:

#Encoding categorical data values


from sklearn.preprocessing import LabelEncoder
labelencoder_Y = LabelEncoder()
Y = labelencoder_Y.fit_transform(Y)

In [21]:

# Splitting the dataset into the Training set and Test set
from sklearn.model_selection import train_test_split
X_train, X_test, Y_train, Y_test = train_test_split(X, Y, test_size = 0.25, random_stat
e = 0)

localhost:8888/nbconvert/html/Desktop/Cancer.ipynb?download=false 2/6
10/8/2020 Cancer

In [22]:

#Feature Scaling
from sklearn.preprocessing import StandardScaler
sc = StandardScaler()
X_train = sc.fit_transform(X_train)
X_test = sc.transform(X_test)

localhost:8888/nbconvert/html/Desktop/Cancer.ipynb?download=false 3/6
10/8/2020 Cancer

In [24]:

#Using Logistic Regression Algorithm to the Training Set


from sklearn.linear_model import LogisticRegression
classifier1 = LogisticRegression(random_state = 0)
classifier1.fit(X_train, Y_train)
#Using KNeighborsClassifier Method of neighbors class to use Nearest Neighbor algorithm
from sklearn.neighbors import KNeighborsClassifier
classifier2 = KNeighborsClassifier(n_neighbors = 5, metric = 'minkowski', p = 2)
classifier2.fit(X_train, Y_train)
#Using SVC method of svm class to use Support Vector Machine Algorithm
from sklearn.svm import SVC
classifier3 = SVC(kernel = 'linear', random_state = 0)
classifier3.fit(X_train, Y_train)
#Using SVC method of svm class to use Kernel SVM Algorithm
from sklearn.svm import SVC
classifier4 = SVC(kernel = 'rbf', random_state = 0)
classifier4.fit(X_train, Y_train)
#Using GaussianNB method of naïve_bayes class to use Naïve Bayes Algorithm
from sklearn.naive_bayes import GaussianNB
classifier5 = GaussianNB()
classifier5.fit(X_train, Y_train)
#Using DecisionTreeClassifier of tree class to use Decision Tree Algorithm

from sklearn.tree import DecisionTreeClassifier


classifier6 = DecisionTreeClassifier(criterion = 'entropy', random_state = 0)
classifier6.fit(X_train, Y_train)

#Using RandomForestClassifier method of ensemble class to use Random Forest Classificat


ion algorithm

from sklearn.ensemble import RandomForestClassifier


classifier7 = RandomForestClassifier(n_estimators = 10, criterion = 'entropy', random_s
tate = 0)
classifier7.fit(X_train, Y_train)

C:\Users\ROHINI\Anaconda3\lib\site-packages\sklearn\linear_model\logistic.
py:432: FutureWarning: Default solver will be changed to 'lbfgs' in 0.22.
Specify a solver to silence this warning.
FutureWarning)

Out[24]:

RandomForestClassifier(bootstrap=True, class_weight=None, criterion='entro


py',
max_depth=None, max_features='auto', max_leaf_nodes
=None,
min_impurity_decrease=0.0, min_impurity_split=None,
min_samples_leaf=1, min_samples_split=2,
min_weight_fraction_leaf=0.0, n_estimators=10,
n_jobs=None, oob_score=False, random_state=0, verbo
se=0,
warm_start=False)

localhost:8888/nbconvert/html/Desktop/Cancer.ipynb?download=false 4/6
10/8/2020 Cancer

In [29]:

Y_pred1 = classifier1.predict(X_test)
Y_pred2 = classifier2.predict(X_test)
Y_pred3 = classifier3.predict(X_test)
Y_pred4 = classifier4.predict(X_test)
Y_pred5 = classifier5.predict(X_test)
Y_pred6 = classifier6.predict(X_test)
Y_pred7 = classifier7.predict(X_test)

In [30]:

from sklearn.metrics import confusion_matrix


cm1 = confusion_matrix(Y_test, Y_pred1)
cm2 = confusion_matrix(Y_test, Y_pred2)
cm3 = confusion_matrix(Y_test, Y_pred3)
cm4 = confusion_matrix(Y_test, Y_pred4)
cm5 = confusion_matrix(Y_test, Y_pred5)
cm6 = confusion_matrix(Y_test, Y_pred6)
cm7 = confusion_matrix(Y_test, Y_pred7)
print(cm1)
print(cm2)
print(cm3)
print(cm4)
print(cm5)
print(cm6)
print(cm7)

[[91 1]
[ 2 48]]
[[91 1]
[ 6 44]]
[[90 2]
[ 4 46]]
[[92 0]
[ 6 44]]
[[89 3]
[ 6 44]]
[[84 8]
[ 6 44]]
[[89 3]
[ 6 44]]

localhost:8888/nbconvert/html/Desktop/Cancer.ipynb?download=false 5/6
10/8/2020 Cancer

In [34]:

from sklearn.metrics import accuracy_score


acc1=accuracy_score(Y_test, Y_pred1)*100
acc2=accuracy_score(Y_test, Y_pred2)*100
acc3=accuracy_score(Y_test, Y_pred3)*100
acc4=accuracy_score(Y_test, Y_pred4)*100
acc5=accuracy_score(Y_test, Y_pred5)*100
acc6=accuracy_score(Y_test, Y_pred6)*100
acc7=accuracy_score(Y_test, Y_pred7)*100
print("LogR",acc1)
print("KNN",acc2)
print("SVM",acc3)
print("K-SVM",acc4)
print("NB",acc5)
print("DT",acc6)
print("RF",acc7)

LogR 97.88732394366197
KNN 95.07042253521126
SVM 95.77464788732394
K-SVM 95.77464788732394
NB 93.66197183098592
DT 90.14084507042254
RF 93.66197183098592

In [38]:

import numpy as np
import pandas as pd
from pandas import Series, DataFrame
import matplotlib.pyplot as plt

data = [acc1, acc2, acc3, acc4,acc5,acc6,acc7]


labels = ['LogR', 'KNN', 'SVM', 'KSVM', 'NB','DT','RF']
plt.xticks(range(len(data)), labels)
plt.xlabel('Algorithms')
plt.ylabel('Accuracy(%)')
plt.title('Comparision of Algorithms')
plt.bar(range(len(data)), data,color=['pink', 'red', 'green', 'blue', 'cyan','yellow',
'purple'])
plt.show()

localhost:8888/nbconvert/html/Desktop/Cancer.ipynb?download=false 6/6

You might also like