Biology Module 3
Biology Module 3
To efficiently study the countless organisms that occupy our biosphere, we can attempt to classify
and describe different organisms into groups that will eventually reflect evolutionary relationships.
How many species are here on Earth? For years, this question keeps on perplexing many biologists.
Speculations, wild guesses, and rough estimations point to as low as half a million and as high as 100 million,
or maybe even more. The Philippines alone which is known to be a mega hotspot for biodiversity has a
significant number of endemic (an ecological state of a species being distinctive to a defined geographic
location) wildlife species which is roughly around 60,000 species of flora and fauna.
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Lecturette No. 1
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Task No. 2: Let’s Analyze
Directions: Answer the question below. Write your answer on the space provided.
Based on the picture from page 3, What is the connection between classification and phylogeny?
Lecturette No. 2
Reconstructing Phylogenies
A phylogeny is a history of the evolutionary descent of extant (i.e., presently living) or extinct (i.e., no longer
living) taxa from ancestral forms. To date, about 1.4 million species (including 750,000 insects, 250,000 plants
and 41, 000 vertebrates) of the 5 to 50 million on Earth have been scientifically described and classified
(Krempels, 2003).
o Primitive vs. Derived Characters
o Homologous vs. Analogous Characters
o Symplesiomorphies vs. Synapomorphies
Cladistic System
Cladistic or phylogenetic systematics is a method that group organisms based on their shared derived
characters. It is said that only shared derived characters can provide information on the phylogeny of the
organism. This is an important work published in 1966 by Willi Hennig. The grouping mainly focuses on taxa
that share many derived characters as opposed to those that do not have shared derived characters.
Relationships are represented as a branching hierarchical tree called a cladogram.
Constructing the Cladogram
Rule 1. The branches at every node can be rotated.
Rule 2. Two lineages branching from a single ancestral node are known as sister taxa.
Rule 3. There is no such as a “most highly evolved species”.
Rule 4. No extant or extinct taxon is considered ancestral to any other extant or extinct taxon.
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Task No. 3: Let’s Try This!
Let us try to exercise your brain cells. Give certain primitive characters with all members of kingdom
Animalia (adapted from Krempels and Lee, 2013). List four primitive characters all humans share with all
other animals, but not with any other living things.
1.
2.
3.
4.
Do you exhibit all four of the characters listed? (Awesome! Now you should be proud that you are
an animal). The characters you have just listed above-if they are exhibited only by animals and not by
other living organisms—are considered symplesiomorphies only with respect to kingdom Animalia. But if
you are considering all living things, then the very same animal characteristics on your list should be
considered synapomorphies that set animals apart from all other living organisms. This means that any
given character cannot be "primitive" or "derived" on its own, however, it can be described as "primitive"
or "derived" only when compared to characters in other taxa. With this in mind, list three derived
characters that set mammals (Mammalia, of which you are a member) apart from all other animals:
1.
2.
3.
Now since you share those characters you just listed with all your mammalian relatives, the
characters are said to be primitive with respect to all mammals, though they are derived with respect to
all animals other than mammals. Do you now recognize this particular logic? Because you share the three
characters above with all other mammals, those characters won't delineate your relationship with other
mammalian groups. Hence, we must consider synapomorphies at the next level. List three derived
characteristics shared by all primates but not shared by other mammals. (You might have to do some
digging.)
1.
2.
3.
The list that you have made above is the three synapomorphies shared primates that set them
apart from all other mammals. Since all primates share these three characters, they are
symplesiomorphies with respect to primates only. However, these three characters will not help you to
determine which primates are your closest relatives. To do that, we must find more unique derived
characters. List two derived characteristics shared by all great apes (Hominidae, of which you are a
member), but not shared by other primates:
1.
2.
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Now this might be easier for you. Finally, list as many derived characters as possible that make
Homo sapiens different from all other great apes. Be sure to restrict your list to truly BIOLOGICAL
characters. This is where it gets really challenging, since there is no clear line to draw, especially where
cultural influences ("nurture") interact with a truly genetic and heritable ("nature") character.
1.
2.
3.
4.
As what you have done in the previous pages, it is not a simple task to find biological
characteristics that truly separate Homo sapiens from other species of great apes. This is because we
share more than 99% of our DNA with our closest ape relatives, the common Chimpanzees (Pan
troglodytes) and Bonobos (Pan paniscus). If we take a look back at the several lists you have made, note
how synapomorphies identified at higher and higher resolutions help us to determine most recent
common ancestry among the various taxa.
Lifted from General Biology 2 (Rex Bookstore) page 177-178
2. Phylogenetic trees have played a key role in a wide range of other applications. Research on other
cases. (at least 100 words)
Example: Investigation whether food sold as “whale meat” in Japan was illegally harvested from
whale species protected under international law.
After accomplishing series of Activities, fill in the blanks to complete the sentences below.
It is necessary to have a knowledge about phylogeny because
_______________________________________________________________________________
_______________________________________________________________________________
_____________________________________________________________________________.
Kindly share your thoughts and learnings by finishing the sentences below:
I have learned that ___________________________________________________________
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Recommended Readings:
• https://evolution.berkeley.edu/evolibrary/article/evo_04 •
https://evolution.berkeley.edu/evolibrary/article/evo_05 •
https://evolution.berkeley.edu/evolibrary/article/evo_07
• https://evolution.berkeley.edu/evolibrary/article/evo_08
Earth Science- Grade 12 Alternative Delivery Mode Quarter 1 - Module 1: Genetics First Edition, 2020
Published by the Department of Education – Division of Cagayan de Oro Schools Division Superintendent:
Dr. Cherry Mae L. Limbaco, CESO V
General Biology 2 (REX Bookstore pages 162-194) M.A. Rea, N.H. Dagamac
Lesson 2
Systematics Based on Evolutionary Relationships: Taxonomy
In a strict definition, systematics is the study of the diversification of life forms, both p ast and
present, and their relationships among other organism through time. Taxonomy, on the other hand, is
the science of arranging and classifying living organisms into groups called taxa.
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Conclusion (Task No. 1):
__________________________________________________________________________________
__________________________________________________________________________________
Lecturette No. 1
The taxonomic system was devised by Carolus Linnaeus (1707-1778). It is a hierarchical system since
organisms are grouped into ever more inclusive categories from species up to kingdom. In 1981, a
category higher than a kingdom, called domain, was proposed by Carl Woese. The table below illustrates how
human is classified using the present classification system. (Note that it is standard practice to italicize the genus
and species names).
The Linnaean taxonomy which is hierarchical in nature is the most employed system nowadays. Note: This
system was created long before scientists understood that organisms evolved.
The scientific name of a species is a “binomial name”, which includes two parts: the genus and the species
epithet. Nomenclature refers to the practice of assigning scientific names. Binomial comes from the words “bi”
meaning “two” and “nomen” meaning “name”. A species name consists of two parts: the genus or generic name
and the specific epithet. The first letter of the genus is always capitalized (e.g. Canis) while the specific epithet
is not capitalized (e. g. familiaris). One can distinguish a species name from the way it is written. Species name
can be in bold letters or underlined or italicized.
Example:
Human
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Conclusion (Task No. 2):
__________________________________________________________________________________
__________________________________________________________________________________
Lecturette No. 2
It is always important that a name would be assigned to any organism and though some species can
have thousands of common names throughout the world, each has only a single scientific name.
Thus, a formal system of naming species of living things was created and which follows a complete
organizational hierarchy, from species through domain, as shown below for our own species, Homo
sapiens. Each domain contains related kingdoms and each kingdom consists of related phyla and so
on. Within each of these ranks, there may be larger and smaller taxa such as subkingdom,
superphylum, subclass, subspecies, etc.
At present, the following nomenclature codes govern the naming of species, as follows:
• Algae, Fungi, and Plants – International Code of Nomenclature for algae, fungi and plants
(ICN)
• Animals – International Code of Zoological Nomenclature (ICZN)
• Bacteria – International Code of Nomenclature of Bacteria (ICNB)
• Cultivated Plants – International Code of Nomenclature for Cultivated Plants (ICNCP)
• Viruses – International Committee on Taxonomy of Viruses (ICTV)
Some of the major rules in nomenclature, as guided by ICBN and ICZN, are the following:
1. Names should be written in Latin.
2. The scientific name of an organism is always written with the genus capitalized and the species
epithet in lower case letters.
3. Because the words are Latinized, they should always be italicized.
4. When scientific names are written by hand, each separate word should be underlined. 5. The first
name to be validly and effectively published gets the priority. This rule has caused numerous
name changes, particularly on fossil organisms.
6. All taxa must have an author when described. For example, Homo sapiens L., the L
stands for Linneaus who first successfully described and named the organism.
Sample mnemonics:
• Kings Play Chess On Fine Glass Sets
• Kings Play Chess On Finely Green Spaces
• Keep Pond Clean Or Froggy Gets Sick
• Kings Play Chess On Fine Grained Sand
• King Philip Came Over For Green Soup
• Kindly Put Candy Out For Good Students
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Here is an example of Dichotomous key. Familiarize and analyze.
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After comparing, answer the guide questions below. Write your answer on your notebook.
I. What trait(s) or character(s) did you use to separate the fruits into groups? Give an example to
illustrate this.
II. Notice differences among fruits. These differences set them distinct from the others. Can you
give an example to show this?
After accomplishing series of Activities, fill in the blanks to complete the sentences below.
As a studen t, it is important to know taxonomy because
___ ____________________________________________________________________________
_______________________________________________________________________________
______________________________________________________ ________ _______________.
Kindly share your th oughts and learnings by finishing the sentences below:
I have learned that ______________ ____________________________________________
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SUMMATIVE TEST: GENERAL BIOLOGY 2
Module 3
I. MULTIPLE CHOICE
DIRECTIONS: Encircle the letter that corresponds to the correct answer. Avoid ERASURES.
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c. A taxon is composed of a name, rank and content
d. It is not a standard rule for all organisms to have a latinized scientific name
e. When writing a scientific name of plants by hand in paper, it must be always italicized.
14. Which of the following best explains the morphological species concept?
a. Sexual reproduction among only similar kinds of species is likely to occur.
b. Different clones with variations in its genetic composition is considered a separate species.
c. Speciation genes among species caused variation in individuals.
d. Mating among different breeds is impossible.
e. A clear difference in appearance makes one a separate species.
15. Which of the following terms is related to cladistics.
a. branching tree
b. synaphomorphic characters
c. primitive domain
d. nested hierarchy
e. paraphyly
16. Birds have wings, as do butterflies and mosquitoes. However, they do not share a recent, common ancestor.
Therefore, the possession of wing in this scenario is called as:
a. homology
b. homoplasy
c. apomorphy
d. polyphyly
e. ancestry
17. Two different monophyletic groups that share common ancestry with each other more recently than either
does with other taxa are known as:
a. subspecies
b. syplesiomorphy
c. synapomorphy
d. sister group
e. polyphyletic
18. While there are many criteria to describe the difference between two species, the biological definition of a
species is based on being part of:
a. a population of animals living in one place
b. a group of animals that behave similarly
c. an interbreeding population of animals
d. a population of animals capable of hybridizing
e. animals that look alike
19. In lake Taal, a species of Sardinella is found to be existing only in that place and nowhere else. This is an
example of ____________________.
a. cosmopolitan species
b. endemic species
c. insipient species
d. phylogenetic species
e. outgroup
20. Molecular phylogenetics can compare the sequence of amino acids in proteins as well as __________________
to identify the characters used to construct cladogram.
a. triglyceride sequence
b. nucleotide sequence
c. carbohydrates chain
d. ribosomes
e. fatty acids
II. IDENTIFICATION
Directions: Identify what is being described in each number. Write your answer in a clean sheet of paper.
1. He devised the present-day taxonomic system.
2. A system of organizing groups into ranks according to status; putting groups at various levels.
3. The theory and practice of classifying organisms.
4. A yardstick for measuring the absolute time of evolutionary change based on the observation that some
genes and other regions of genomes appear to evolve at constant rates.
5. The evolutionary history of a species or group of species.
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6. The study of the kinds and diversity of organisms and of any and all relationships among them.
7. Similarity due to shared ancestry.
8. Studying the embryological development of living things provides clues to the evolution of present-day
organisms.
9. Refers to the practice of assigning scientific names.
10. Is a tool that helps identify unknown organisms to some taxonomic level (e.g., species, genus, family, etc.).
11. A principal taxonomic category that ranks above class and below kingdom.
12. Often defined as the largest group of organisms in which any two individuals of the appropriate sexes or
mating types can produce fertile offspring, typically by sexual reproduction.
13. A taxonomic rank in the classification of organisms between genus and order.
14. This is a taxonomic category ranking used in biological classification that is below family and above
species.
15. The highest taxonomic rank in the hierarchical biological classification system, above the kingdom level.
IV. ESSAY
Directions: Answer the following questions. Write your answer on your notebook. (At least 3 to 5 sentences) (5
points each)
1. Why are protist, plants, fungi and animals classified into the same domain but into different kingdoms?
2. If you start conversing with a friend who is not familiar with scientific names, how would you describe why it is
important and how scientist name species.
3. Why are viruses, viroids, and prions not included in the biological classification system?
References/Lifted from:
General Biology 2 (REX Bookstore pages 196-198) M.A. Rea, N.H. Dagamac
Exploring Life Through Science General Biology 2 (Phoenix Publishing House page 328-329) A.C.
MoralesRamos, J.D. Ramos
Teaching Guide for Senior High School GENERAL BIOLOGY 2 Specialized Subject (pages 109-128)
Lesson 3
Systematics Based on Evolutionary Relationships:
Cladistics and Phylogeny
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Basically, a family picture represents a family tree. Family trees show how people are related to each other.
Similarly, scientists use phylogenetic trees like cladograms to study the relationships among organisms.
Sometimes, family trees are used to show relationships between individuals. Those who are closely related
are located closer tog ether than those who are only distantly related. For instance, in a family tree, we can
see that the siblings are close together, indicating a close genetic relationship. But the siblings are far from
their great aunt, indicating a more distant genetic relationship. Family trees can also be used to see ancestral
connections. That is, we can see that all the people in the last generation have the same great great-
grandparents in common.
Lecturette No. 1
Cladistics or Phylogenetic Systematics is a method that group organisms based on their shared derived
characters. It is said that only shared derived characters can provide information on the phylogeny of the
organism. This is an important work published in 1966 by Willi Hennig. The groupings mainly fo cus on taxa
that share many derived characters as opposed to those that do not have shared derived characters.
Relationships are represented as a branching hierarchical tree called a cladogram. The cladogram is
constructed such that the number of changes from one character state to the next are minimized. In the
cladistic system, organisms are classified exclusively on the basis of how recent are the descendants from their
common ancestor. Therefore, always remember that the synapomorphies are the main bas es for the
determination of taxonomic/phylogenetic relationships. The presence of many shared derived characters
among taxa is considered strong evidence of their common descent. Differences in the degree of rate of
change among branches of organisms are i rrelevant to their classification.
Reconstructing Phylogenies
A phylogeny is a history of the evolutionary descent of extant or extinct taxa from ancestral forms.
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taxa is symplesiomorphy; a derived character is apomorphy; a shared derived character between two or more
taxa is known as a synapomorphy.
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Lecturette No. 2
5. Continue separating the animals into smaller groups using the characters in number one.
6. When an animal reaches the tip of the branch, glue it. Repeat for all other animals in the collection.
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Task No. 5: Fill Me Please!
What an exemplary performance! You did a great job in finishing this module. Hopefully, you had
an enjoying moment in this journey. Congratulations!
After accomplishing series of Activities, fill in the blanks to complete the sentences below.
By using cladograms and tracing phylogeny of an organisms we can be able to
_______________________________________________________________________________
_______________________________________________________________________________
_____________________________________________________________________________.
Kindly share your thoughts and learnings by finishing the sentences below:
I have learned that ___________________________________________________________
Earth Science- Grade 12 Alternative Delivery Mode Quarter 1 - Module 1: Genetics First Edition, 2020
Published by the Department of Education – Division of Cagayan de Oro Schools Division Superintendent:
Dr. Cherry Mae L. Limbaco, CESO V
General Biology 2 (REX Bookstore pages 162-194) M.A. Rea, N.H. Dagamac
18
SUMMATIVE TEST: GENERAL BIOLOGY 2
Module 4
I. MULTIPLE CHOICE
DIRECTIONS: Encircle the letter that corresponds to the correct answer. Avoid ERASURES.
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16. Which part of the phylogenetic tree indicates that an ancestral lineage gave rise to all organisms in the
tree?
a. branch point b. sister taxa c. root d. basal taxon
17. Which of the following is used to determine phylogeny?
a. DNA b. life cycle c. species mutation d. evolutionary history
18. What do scientists use to apply cladistics?
a. homoplasy b. homologous traits c. monophyletic trait d. analogous trait
19. What does the word “phyletic” mean?
a. evolutionary development b. heredity c. organismal change d. shared characteristics
20. According to the assumption of cladistics which of the following is TRUE?
a. Groups of related species descended from a common ancestor.
b. Characteristics change over time
c. Branching patterns symbolizes relationships among groups, with new evolutionary groups arising
from a common ancestor.
d. d. All of the above.
II. ESSAY
Directions: Answer the following questions. Write your answer on a separate sheet of paper. (At least 3 to
5 sentences) (5 points each)
1. How does a phylogenetic tree relate to the passing of time?
2. Some organisms that appear very closely related on a phylogenetic tree may not actually be closely
related. Why is this?
3. Why is it important for scientist to distinguish between homologous and homologous characteristics
before building phylogenetic trees?
References/Lifted from:
General Biology 2 (REX Bookstore pages 196-198) M.A. Rea, N.H. Dagamac
Exploring Life Through Science General Biology 2 (Phoenix Publishing House page 293-296) A.C.
Morales-Ramos, J.D. Ramos
General Biology 2 Textbook Department of Education (page 123-129, 141)
~~~
________________________________________
Parent/Guardian’s Signature over Printed Name
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For Task No. 3
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