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Chemsketch Tutorial PDF

This document provides a basic tutorial for using ChemSketch software. It explains how to draw benzene rings showing aromaticity by pasting a benzene template and selecting "Show Aromaticity". It also describes how to create concise NO2 labels on benzene rings by drawing an NH2 group and editing the atom label. Useful online resources for introductory guides to ChemSketch and Symyx Draw are also listed.

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145 views

Chemsketch Tutorial PDF

This document provides a basic tutorial for using ChemSketch software. It explains how to draw benzene rings showing aromaticity by pasting a benzene template and selecting "Show Aromaticity". It also describes how to create concise NO2 labels on benzene rings by drawing an NH2 group and editing the atom label. Useful online resources for introductory guides to ChemSketch and Symyx Draw are also listed.

Uploaded by

The Negative Angle
Copyright
© © All Rights Reserved
Available Formats
Download as PDF, TXT or read online on Scribd
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Students House, KSU Office S3 [Scubed], University of Malta, Msida 1

MSD 2080
Email: [email protected] Website: www.scubed.info
Mob No: 99834244

Basic ChemSketch Tutorial


When drawing organic molecules, you may want to create the standardised benzene ring with
Aromaticity being shown (i.e. the bonds in the centre appear as one whole ring). You can do this by:
1. Pressing F5 to bring up the Template Window
2. Selecting 'Aromatics' from the drop-down menu at the top
3. Clicking the 'Benzene' icon and paste it wherever desired
4. Selecting the benzene ring using the Select Tool (1st icon top left below 'Structure' button)
5. To show the bonds as a ring, click Tools and scroll down to 'Show Aromaticity'

Affiliates:
Students House, KSU Office S3 [Scubed], University of Malta, Msida 2
MSD 2080
Email: [email protected] Website: www.scubed.info
Mob No: 99834244

Creating concise NO2 labels for the Benzene Rings or other unusual atom labels
(e.g.: X, Me, Et etc). This can be done by:
1. Clicking on the 'N' icon on the left toolbar
2. Drawing a bond from the benzene ring so as to create an NH2 Group (using
the Shift Key when drawing bonds ensures each bond is of equal length and
automatically oriented according to standard angles eg: 90 o, 45o etc...)
3. Editing the label using the Edit Atom Label button towards the bottom of the
left toolbar
4. Making sure that the Formula Style Tickbox is checked, change the label to
NO2.

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Useful Resource:
Handy Introductory Guide to ChemSketch use:
http://bbruner.org/obc/chemsket.htm
Similar Guide for Symyx Draw:
http://bbruner.org/obc/symyx.htm
Students House, KSU Office S3 [Scubed], University of Malta, Msida 3
MSD 2080
Email: [email protected] Website: www.scubed.info
Mob No: 99834244

Drawing Mechanisms in ChemSketch

Affiliates:

1. Draw all the basic structures involved in the mechanism.

2. Draw reaction arrows using the Reaction Arrow tool under the Structure tab.
Students House, KSU Office S3 [Scubed], University of Malta, Msida 4
MSD 2080
Email: [email protected] Website: www.scubed.info
Mob No: 99834244

Affiliates:
3. Alter the charge value of any atoms by double-clicking on the atom in question. In the
Properties dialog box, navigate to the Charge tab as indicated above and set as required.

4. Finally, draw the mechanistic arrows by using a combination of the Arrow and Arc
tools under the Draw tab. Once this is done, grouping the structures is recommended.

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