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Food Chemistry Proteins1a

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The text explores the fundamental aspects of peptides and proteins, focusing on their formation, structure, and biological functions. It describes the processes of peptide bond formation through condensation reactions, the significance of protein hydrolysis, and the structural hierarchy of proteins spanning primary to quaternary levels. Insights into intermolecular interactions, particularly involving disulfide bonds and the impact of sequence and amino acid composition on protein properties, are discussed in the context of food chemistry.

Proteins  Occurrence and general properties of amino acids,  peptides and proteins present in food Effect of pH and charge on amino acids, peptides and  Solubility of proteins proteins  Chemical reactions and physical changes occurring with  Effects of processing on properties of proteins free amino acids and proteins Amino Acids  Building blocks – Monomeric units of proteins  The monomer unit of proteins •R is the side chain. •One of 20 different chemical compounds •Some R-groups are acid (other alkali) •Some R-groups are water Chiral carbon (L- series) soluble (others are not) Proteins  Building blocks ● Amino acids – 20 amino acids Amino Acids Occurrence and general properties  >300 different amino acids identified - only ± 20  Amino acids contain an amino group (-NH2) and a carboxyl a.a commonly present in protein  Attached to the α-carbon next to a side chain group (-COOH)  Asymmetrical α-carbon making stereoisomerism and hydrogen atom possible – all in protein except glycine  Optically active  Chiral centre results in the L- and D-  Only L-amino acids – in proteins enantiomers Amino Acids – side chains  Differ - different properties and sizes  Three groups classification  A.A with polar (hydrophilic) charged side chains  A.A with polar (hydrophobic) non-charged side  A.A with non-polar non-charged side chains chains Classification of amino acids occurs according to their side chain Amino Acids Classification of amino acids occurs according to their side chain Amino Acids  Uncharged.  Aliphatic. Polar Non-Polar Ser, Thr, Ala, Ile, Leu, Asn, Gln, Cys Met, Pro, Val  Positive (basic). Arg,  Aromatic. Phe, Trp, Tyr Lys, His  Negative (acidic). Asp, Glu, Example Amino Acids Alanine Phenylalanine Glutamic acid Peptide Bonds  Peptides (and proteins) are sequences of amino acids that are linked to each other by a peptide bond. ● N-terminal amino acid - an amino acid with a free a-amino group on one end of the sequence ● C-terminal amino acid - an amino acid with a free a-carboxyl group at the other end Peptide Bonds  Condensation of a-COOH group of one amino acid with the a-NH2 group of another amino acid  removal of a water molecule ● Resultant structure – one a-NH2 group on the N-terminal amino acid and one a-COOH group on the C-terminal present in a peptide or protein molecule ● Structure of peptides and proteins from the N- terminal to the C-terminal Nomenclature  Number of amino acids – di, tri, tetrapeptides ● Protein – larger peptide (polypeptide)  Hydrolysis of proteins – breakdown of peptide bonds ● Peptide formation – protein hydrolysates ● Biological function e.g. anti-microbial peptides ● Functionality changes ● Protein size and folding ● Post translation hydrolysis – protease enzyme ● Disulphide bridge Disulfide Bonds C SH H2 HS C H2  Two cysteine molecules under oxidizing  Intermolecular or conditions [O] intramolecular cross- link C S S C H2 H2 Proteins  Consist of amino acids ● Difference in relative abundance in proteins  Structure and the properties of proteins depends ● Number of amino acids (length of the peptide chain) ● Composition of a.a (sequence) e.g. hydrophobic a.a and solubility Protein Structure . 20 Amino Acids Coded in DNA Primary Secondary Self assembly to a single (native) structure. Depends on primary structure and solution conditions Tertiary ( Quaternary ) Common in foods. Many non- native forms depending on protein structure, solution Denatured conditions (& history) and ingredient interactions Protein structure  Primary structure - a.a sequence – order of a.a in the  Secondary structure - non-covalent interactions of part chain of sequence – folding in repetitive spatial structures ● the a-helix, the b-sheet¸ and the random coil ● Formation of hydrogen bonds between peptide bonds via carbonyl oxygen atoms and amide  Tertiary structure – 3D structure of folded peptide hydrogen atoms ● Defines how the different elements of the secondary structure are oriented relative to each  Quaternary structure - way that the different other in 3D space polypeptide chains are associated ● Proteins formed by several polypeptide chain a-Helix  N-H to C=O hydrogen bonds in 4th succeeding  Hydrogen bonds A.A.  Typically parallel to axis amphiphilic b-Sheet  C=O and N-H perpendicular to chain form inter-segment H-  Parallel or antiparallel bonds  b-strands typically 5-15  More stable than a- A.A. helix b-sheet Protein Folding Hydrophobic amino acids Peptide chain Tertiary Structure Types of Tertiary Structure Classification based on size/conformation Globular Disordered/random coil Fibrous Many insoluble amino Interacts well with water acids, protein tends to Strong secondary and takes up a random minimize structure allows configuration surface/volume ratio protein to retain a neither globular nor non-spherical shape Solubility based on fibrillar – form micelles – not water soluble solvent  Other classification based on solubility – Prolamins, glutelins, albumins and globulins Quaternary Structure Folded protein unable to Dimerized protein shields the contain some hydrophobic hydrophobic amino acids residues from water Structural forces in protein folding and stability  Primary structure stabilised by covalent bonds - higher structures are stabilised mostly by non- covalent bonds ● Di-sulphide bond exception – tertiary and quartenary structure stabilisation Effect of pH on the charge of amino acids  Acidic and basic character ● carboxyl group (-COOH) and amino group (-NH2)  Peptides - also exhibit acid/base character ● Contribution of N-terminal (NH2-group)and C-terminal COOH-group VS amino acid side chains ● Depend on the length of chain ● longer peptide - less the contribution of the terminals  Overall charge of a.a - dissociation constants (pK) ● pH = pK the acid (or base) is exactly 50% protonated ● At pH << pK the acid (or base) is mostly in the protonated form (so COOH / NH3+) ● At pH >> pK the acid (or base) is mostly in the deprotonated form (so COO- / NH2)