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Ugo Borello
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Comment: Should voomWithQualityWeights still be used when the sample-specific weights var
by
A.Barden
▴
10
Thanks very much for this informative answer.
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
by
Gordon Smyth
52k
I would recommend now for you to use voomLmFit(), which has all the functionality of voomWithQualityWeights() but with some more features a…
Comment: How to use limma to analyze complex temporal RNAseq data
by
Jinming Cheng
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0
Hi Jiahao,
I generated a dataset to make it similar to yours, and I tried my R codes (`voomLmFit` + `eBayes`) on this dataset, which worke…
Comment: How to use limma to analyze complex temporal RNAseq data
by
Jiahao Tian
•
0
Hi Jinming,
I want to make some supplement to my question. The `D` object was built by using `DEGList`, so it is the same as your `y` objec…
Answer: DESeq2 used with zinbwave weights - Differences on contrasts calculations
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Michael Love
43k
There is one case where it is different in the code (it's here in the forum but probably buried under thousands of posts). If you have a mu…
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