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Comment: Are voomByGroup and voomLmFit compatible?
by
ATpoint
★
4.9k
Hi @gordonsmyth, can I ask a side question here, as it probably does not merit its own post: I see in voomByGroup when applied to pseudobul…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
JackelineBogan899
•
0
Great. I will join it.
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ATpoint
★
4.9k
It means that you did not formulate the design correctly. Can you show the creation of the DESeqDataSet and a snipped of the coldata so one…
Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
by
Denise
•
0
In section 9 Time course experiments of the RNA-seq workflow tutorial, it says
```
library("fission")
data("fission")
ddsTC <- DESeqDataSe…
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
by
Michael Love
43k
I pushed 1.48.2 to release, or you can get the latest with `remotes::install_github("thelovelab/DESeq2")`
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