[HTML][HTML] Decoding post-translational modification crosstalk with proteomics

M Leutert, SW Entwisle, J Villén - Molecular & Cellular Proteomics, 2021 - Elsevier
Post-translational modification (PTM) of proteins allows cells to regulate protein functions,
transduce signals and respond to perturbations. PTMs expand protein functionality and …

Large-scale phosphorylation analysis of mouse liver

J Villén, SA Beausoleil, SA Gerber, SP Gygi - Proceedings of the National …, 2007 - pnas.org
Protein phosphorylation is a complex network of signaling and regulatory events that affects
virtually every cellular process. Our understanding of the nature of this network as a whole …

Large-scale characterization of HeLa cell nuclear phosphoproteins

SA Beausoleil, M Jedrychowski, D Schwartz… - Proceedings of the …, 2004 - pnas.org
Determining the site of a regulatory phosphorylation event is often essential for elucidating
specific kinase–substrate relationships, providing a handle for understanding essential …

[HTML][HTML] A tissue-specific atlas of mouse protein phosphorylation and expression

EL Huttlin, MP Jedrychowski, JE Elias, T Goswami… - Cell, 2010 - cell.com
Although most tissues in an organism are genetically identical, the biochemistry of each is
optimized to fulfill its unique physiological roles, with important consequences for human …

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

DL Swaney, P Beltrao, L Starita, A Guo, J Rush… - Nature …, 2013 - nature.com
Cross-talk between different types of post-translational modifications on the same protein
molecule adds specificity and combinatorial logic to signal processing, but it has not been …

A quantitative atlas of mitotic phosphorylation

N Dephoure, C Zhou, J Villén, SA Beausoleil… - Proceedings of the …, 2008 - pnas.org
The eukaryotic cell division cycle is characterized by a sequence of orderly and highly
regulated events resulting in the duplication and separation of all cellular material into two …

The impact of microRNAs on protein output

D Baek, J Villén, C Shin, FD Camargo, SP Gygi… - Nature, 2008 - nature.com
MicroRNAs are endogenous∼ 23-nucleotide RNAs that can pair to sites in the messenger
RNAs of protein-coding genes to downregulate the expression from these messages …

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

SA Beausoleil, J Villén, SA Gerber, J Rush… - Nature …, 2006 - nature.com
Data analysis and interpretation remain major logistical challenges when attempting to
identify large numbers of protein phosphorylation sites by nanoscale reverse-phase liquid …

Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution

LJ Holt, BB Tuch, J Villén, AD Johnson, SP Gygi… - Science, 2009 - science.org
To explore the mechanisms and evolution of cell-cycle control, we analyzed the position and
conservation of large numbers of phosphorylation sites for the cyclin-dependent kinase …

Phosphoproteomic analysis identifies Grb10 as an mTORC1 substrate that negatively regulates insulin signaling

Y Yu, SO Yoon, G Poulogiannis, Q Yang, XM Ma… - Science, 2011 - science.org
The evolutionarily conserved serine-threonine kinase mammalian target of rapamycin
(mTOR) plays a critical role in regulating many pathophysiological processes. Functional …