data_3WQH
#
_model_server_result.job_id            NmBC5FMUWm2wjlPvi-fUeg 
_model_server_result.datetime_utc      '2025-03-12 09:37:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3wqh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":804}' 
#
_entry.id    3WQH 
#
_exptl.entry_id    3WQH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3WQH 
_cell.length_a            65.16 
_cell.length_b            68.99 
_cell.length_c            419.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3WQH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 292 A CYS 328 1_555 A SG CYS 303 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 349 A CYS 385 1_555 A SG CYS 358 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
disulf ? disulf3 A SG CYS 408 A CYS 444 1_555 A SG CYS 411 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf4 A SG CYS 418 A CYS 454 1_555 A SG CYS 436 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf5 A SG CYS 613 A CYS 649 1_555 A SG CYS 726 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 B SG CYS 292 B CYS 328 1_555 B SG CYS 303 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf7 B SG CYS 349 B CYS 385 1_555 B SG CYS 358 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf8 B SG CYS 408 B CYS 444 1_555 B SG CYS 411 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf9 B SG CYS 418 B CYS 454 1_555 B SG CYS 436 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf10 B SG CYS 613 B CYS 649 1_555 B SG CYS 726 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
covale ? covale1 A ND2 ASN 49 A ASN 85 1_555 C C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 A ND2 ASN 114 A ASN 150 1_555 D C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 A ND2 ASN 183 A ASN 219 1_555 E C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale4 A ND2 ASN 193 A ASN 229 1_555 F C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale5 A ND2 ASN 245 A ASN 281 1_555 G C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale6 A ND2 ASN 285 A ASN 321 1_555 H C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale7 B ND2 ASN 49 B ASN 85 1_555 K C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale8 B ND2 ASN 114 B ASN 150 1_555 L C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale9 B ND2 ASN 183 B ASN 219 1_555 M C1 NAG . B NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale10 B ND2 ASN 193 B ASN 229 1_555 N C1 NAG . B NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale11 B ND2 ASN 245 B ASN 281 1_555 O C1 NAG . B NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale12 B ND2 ASN 285 B ASN 321 1_555 P C1 NAG . B NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3WQH 
_atom_sites.fract_transf_matrix[1][1]    0.015347 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002383 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 801 767 NAG NAG . 
D 2 NAG A 1 802 768 NAG NAG . 
E 2 NAG A 1 803 769 NAG NAG . 
F 2 NAG A 1 804 770 NAG NAG . 
G 2 NAG A 1 805 771 NAG NAG . 
H 2 NAG A 1 806 772 NAG NAG . 
I 2 NAG A 1 807 773 NAG NAG . 
J 3 SKK A 1 808 801 SKK SKK . 
K 2 NAG B 1 801 767 NAG NAG . 
L 2 NAG B 1 802 768 NAG NAG . 
M 2 NAG B 1 803 769 NAG NAG . 
N 2 NAG B 1 804 770 NAG NAG . 
O 2 NAG B 1 805 771 NAG NAG . 
P 2 NAG B 1 806 772 NAG NAG . 
Q 3 SKK B 1 807 801 SKK SKK . 
R 4 HOH A 1 901 1002 HOH HOH . 
R 4 HOH A 2 902 1006 HOH HOH . 
R 4 HOH A 3 903 1008 HOH HOH . 
R 4 HOH A 4 904 1010 HOH HOH . 
R 4 HOH A 5 905 1011 HOH HOH . 
R 4 HOH A 6 906 1016 HOH HOH . 
R 4 HOH A 7 907 1017 HOH HOH . 
R 4 HOH A 8 908 1018 HOH HOH . 
R 4 HOH A 9 909 1019 HOH HOH . 
R 4 HOH A 10 910 1020 HOH HOH . 
R 4 HOH A 11 911 1021 HOH HOH . 
R 4 HOH A 12 912 1022 HOH HOH . 
R 4 HOH A 13 913 1024 HOH HOH . 
R 4 HOH A 14 914 1027 HOH HOH . 
R 4 HOH A 15 915 1029 HOH HOH . 
R 4 HOH A 16 916 1030 HOH HOH . 
R 4 HOH A 17 917 1033 HOH HOH . 
R 4 HOH A 18 918 1040 HOH HOH . 
R 4 HOH A 19 919 1041 HOH HOH . 
R 4 HOH A 20 920 1042 HOH HOH . 
R 4 HOH A 21 921 1044 HOH HOH . 
R 4 HOH A 22 922 1046 HOH HOH . 
R 4 HOH A 23 923 1049 HOH HOH . 
R 4 HOH A 24 924 1050 HOH HOH . 
R 4 HOH A 25 925 1051 HOH HOH . 
R 4 HOH A 26 926 1052 HOH HOH . 
R 4 HOH A 27 927 1056 HOH HOH . 
R 4 HOH A 28 928 1057 HOH HOH . 
R 4 HOH A 29 929 1058 HOH HOH . 
R 4 HOH A 30 930 1059 HOH HOH . 
R 4 HOH A 31 931 1060 HOH HOH . 
R 4 HOH A 32 932 1063 HOH HOH . 
R 4 HOH A 33 933 1065 HOH HOH . 
R 4 HOH A 34 934 1066 HOH HOH . 
R 4 HOH A 35 935 1067 HOH HOH . 
R 4 HOH A 36 936 1070 HOH HOH . 
R 4 HOH A 37 937 1071 HOH HOH . 
R 4 HOH A 38 938 1074 HOH HOH . 
R 4 HOH A 39 939 1075 HOH HOH . 
R 4 HOH A 40 940 1076 HOH HOH . 
R 4 HOH A 41 941 1077 HOH HOH . 
R 4 HOH A 42 942 1078 HOH HOH . 
R 4 HOH A 43 943 1079 HOH HOH . 
R 4 HOH A 44 944 1080 HOH HOH . 
R 4 HOH A 45 945 1082 HOH HOH . 
R 4 HOH A 46 946 1087 HOH HOH . 
R 4 HOH A 47 947 1091 HOH HOH . 
R 4 HOH A 48 948 1092 HOH HOH . 
R 4 HOH A 49 949 1094 HOH HOH . 
R 4 HOH A 50 950 1095 HOH HOH . 
R 4 HOH A 51 951 1096 HOH HOH . 
R 4 HOH A 52 952 1102 HOH HOH . 
R 4 HOH A 53 953 1103 HOH HOH . 
R 4 HOH A 54 954 1104 HOH HOH . 
S 4 HOH B 1 1001 1001 HOH HOH . 
S 4 HOH B 2 1002 1003 HOH HOH . 
S 4 HOH B 3 1003 1004 HOH HOH . 
S 4 HOH B 4 1004 1005 HOH HOH . 
S 4 HOH B 5 1005 1007 HOH HOH . 
S 4 HOH B 6 1006 1009 HOH HOH . 
S 4 HOH B 7 1007 1012 HOH HOH . 
S 4 HOH B 8 1008 1013 HOH HOH . 
S 4 HOH B 9 1009 1014 HOH HOH . 
S 4 HOH B 10 1010 1015 HOH HOH . 
S 4 HOH B 11 1011 1023 HOH HOH . 
S 4 HOH B 12 1012 1025 HOH HOH . 
S 4 HOH B 13 1013 1026 HOH HOH . 
S 4 HOH B 14 1014 1028 HOH HOH . 
S 4 HOH B 15 1015 1031 HOH HOH . 
S 4 HOH B 16 1016 1032 HOH HOH . 
S 4 HOH B 17 1017 1034 HOH HOH . 
S 4 HOH B 18 1018 1035 HOH HOH . 
S 4 HOH B 19 1019 1036 HOH HOH . 
S 4 HOH B 20 1020 1037 HOH HOH . 
S 4 HOH B 21 1021 1038 HOH HOH . 
S 4 HOH B 22 1022 1039 HOH HOH . 
S 4 HOH B 23 1023 1043 HOH HOH . 
S 4 HOH B 24 1024 1045 HOH HOH . 
S 4 HOH B 25 1025 1047 HOH HOH . 
S 4 HOH B 26 1026 1048 HOH HOH . 
S 4 HOH B 27 1027 1053 HOH HOH . 
S 4 HOH B 28 1028 1054 HOH HOH . 
S 4 HOH B 29 1029 1055 HOH HOH . 
S 4 HOH B 30 1030 1061 HOH HOH . 
S 4 HOH B 31 1031 1062 HOH HOH . 
S 4 HOH B 32 1032 1064 HOH HOH . 
S 4 HOH B 33 1033 1068 HOH HOH . 
S 4 HOH B 34 1034 1069 HOH HOH . 
S 4 HOH B 35 1035 1072 HOH HOH . 
S 4 HOH B 36 1036 1073 HOH HOH . 
S 4 HOH B 37 1037 1081 HOH HOH . 
S 4 HOH B 38 1038 1083 HOH HOH . 
S 4 HOH B 39 1039 1084 HOH HOH . 
S 4 HOH B 40 1040 1085 HOH HOH . 
S 4 HOH B 41 1041 1086 HOH HOH . 
S 4 HOH B 42 1042 1088 HOH HOH . 
S 4 HOH B 43 1043 1089 HOH HOH . 
S 4 HOH B 44 1044 1090 HOH HOH . 
S 4 HOH B 45 1045 1093 HOH HOH . 
S 4 HOH B 46 1046 1097 HOH HOH . 
S 4 HOH B 47 1047 1098 HOH HOH . 
S 4 HOH B 48 1048 1099 HOH HOH . 
S 4 HOH B 49 1049 1100 HOH HOH . 
S 4 HOH B 50 1050 1101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 2 27.809 69.626 39.86 1 49.07 ? C1 NAG 804 A 1 
HETATM 2 C C2 NAG . . . F 2 26.625 70.528 39.438 1 48.12 ? C2 NAG 804 A 1 
HETATM 3 C C3 NAG . . . F 2 26.08 71.147 40.741 1 50.24 ? C3 NAG 804 A 1 
HETATM 4 C C4 NAG . . . F 2 25.7 70.042 41.746 1 52.78 ? C4 NAG 804 A 1 
HETATM 5 C C5 NAG . . . F 2 26.884 69.085 41.976 1 52.6 ? C5 NAG 804 A 1 
HETATM 6 C C6 NAG . . . F 2 26.464 67.825 42.755 1 55.1 ? C6 NAG 804 A 1 
HETATM 7 C C7 NAG . . . F 2 26.901 71.539 37.193 1 40.36 ? C7 NAG 804 A 1 
HETATM 8 C C8 NAG . . . F 2 27.413 72.731 36.396 1 39.83 ? C8 NAG 804 A 1 
HETATM 9 N N2 NAG . . . F 2 27.069 71.596 38.53 1 43.69 ? N2 NAG 804 A 1 
HETATM 10 O O3 NAG . . . F 2 24.902 71.872 40.455 1 54.03 ? O3 NAG 804 A 1 
HETATM 11 O O4 NAG . . . F 2 25.351 70.629 42.984 1 53.58 ? O4 NAG 804 A 1 
HETATM 12 O O5 NAG . . . F 2 27.335 68.635 40.716 1 48.9 ? O5 NAG 804 A 1 
HETATM 13 O O6 NAG . . . F 2 27.595 67.017 42.981 1 59.75 ? O6 NAG 804 A 1 
HETATM 14 O O7 NAG . . . F 2 26.367 70.586 36.613 1 34.64 ? O7 NAG 804 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    103 
_model_server_stats.query_time_ms           1401 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           14 
#