phybin: Utility for binning phylogenetic trees in Newick format.
Classifies (bins) input Newick trees by topology, creating output files that characterize the size and contents of each bin (including generating GraphViz-based visual representations of the tree topologies).
Downloads
- phybin-0.1.2.5.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
| Versions [RSS] | 0.1, 0.1.1, 0.1.2, 0.1.2.1, 0.1.2.4, 0.1.2.5, 0.2.2, 0.2.11, 0.3 |
|---|---|
| Dependencies | base (>=3 && <5), bytestring, containers, directory, fgl, filepath, graphviz (>=2999.16), HSH, HUnit, parsec (>=3.1.0), prettyclass, process, stringtable-atom, text (>=0.11 && <0.12), unix [details] |
| License | BSD-3-Clause |
| Copyright | Copyright (c) 2010 Ryan Newton |
| Author | Ryan Newton <[email protected]> |
| Maintainer | Ryan Newton <[email protected]> |
| Category | Bioinformatics |
| Home page | http://people.csail.mit.edu/newton/phybin/ |
| Source repo | head: git clone git://github.com/rrnewton/PhyBin.git |
| Uploaded | by RyanNewton at 2013-07-19T19:27:56Z |
| Distributions | Debian:0.3 |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | phybin |
| Downloads | 7007 total (16 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs not available [build log] All reported builds failed as of 2016-12-20 [all 7 reports] |