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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 20 19

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    35 46

Repositories

Showing 10 of 426 repositories
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    CDCgov/prime-reportstream’s past year of commit activity
    Kotlin 76 CC0-1.0 42 1,261 156 Updated Feb 7, 2025
  • CDCgov/NEDSS-Modernization’s past year of commit activity
    Java 19 4 0 4 Updated Feb 7, 2025
  • wastewater-informed-covid-forecasting Public

    Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub

    CDCgov/wastewater-informed-covid-forecasting’s past year of commit activity
    R 47 Apache-2.0 14 85 (2 issues need help) 7 Updated Feb 7, 2025
  • NEDSS-DataIngestion Public

    Data Ingestion for Modernization of NEDSS Project by Enquizit

    CDCgov/NEDSS-DataIngestion’s past year of commit activity
    Java 6 Apache-2.0 4 0 9 Updated Feb 7, 2025
  • CDCgov/scenarios-hpc-azure’s past year of commit activity
    Python 0 Apache-2.0 2 2 1 Updated Feb 7, 2025
  • pyrenew-hew Public

    Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew

    CDCgov/pyrenew-hew’s past year of commit activity
    Python 7 Apache-2.0 3 59 9 Updated Feb 7, 2025
  • CDCgov/ixa-epi-isolation’s past year of commit activity
    Rust 1 Apache-2.0 2 5 4 Updated Feb 7, 2025
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 64 Apache-2.0 23 15 1 Updated Feb 7, 2025
  • tostadas Public

    🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

    CDCgov/tostadas’s past year of commit activity
    Python 27 Apache-2.0 11 22 2 Updated Feb 7, 2025
  • CDCgov/cfa-viral-lineage-model’s past year of commit activity
    Python 11 Apache-2.0 2 16 2 Updated Feb 6, 2025