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DiffInfinite: Large Mask-Image Synthesis via Parallel Random Patch Diffusion in Histopathology

Aversa, M. et al. (2024) DiffInfinite: Large Mask-Image Synthesis via Parallel Random Patch Diffusion in Histopathology. In: 37th Conference on Neural Information Processing Systems (NeurIPS 2023), New Orleans, Louisiana, USA, 10-16 December 2023, ISBN 9781713899921

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Publisher's URL: https://proceedings.neurips.cc/paper_files/paper/2023/hash/f64927f5de00c47899e6e58c731966b6-Abstract-Datasets_and_Benchmarks.html

Abstract

We present DiffInfinite, a hierarchical diffusion model that generates arbitrarily large histological images while preserving long-range correlation structural information. Our approach first generates synthetic segmentation masks, subsequently used as conditions for the high-fidelity generative diffusion process. The proposed sampling method can be scaled up to any desired image size while only requiring small patches for fast training. Moreover, it can be parallelized more efficiently than previous large-content generation methods while avoiding tiling artefacts. The training leverages classifier-free guidance to augment a small, sparsely annotated dataset with unlabelled data. Our method alleviates unique challenges in histopathological imaging practice: large-scale information, costly manual annotation, and protective data handling. The biological plausibility of DiffInfinite data is validated in a survey by ten experienced pathologists as well as a downstream segmentation task. Furthermore, the model scores strongly on anti-copying metrics which is beneficial for the protection of patient data.

Item Type:Conference Proceedings
Additional Information:This work was supported by the Federal Ministry of Education and Research (BMBF) as grants [SyReal (01IS21069B)]. RM-S is grateful for EPSRC support through grants EP/T00097X/1, EP/R018634/1 and EP/T021020/1, and DI for EP/R513222/1. MA is funded by Dotphoton, QuantIC and a UofG Ph.D. scholarship.
Status:Published
Refereed:Yes
Glasgow Author(s) Enlighten ID:Ivanova, Ms Daniela and Murray-Smith, Professor Roderick and Aversa, Marco
Authors: Aversa, M., Nobis, G., Hägele, M., Standvoss, K., Chirica, M., Murray-Smith, R., Alaa, A., Ruff, L., Ivanova, D., Samek, W., Klauschen, F., Sanguinetti, B., and Oala, L.
College/School:College of Science and Engineering > School of Computing Science
ISBN:9781713899921
Copyright Holders:Copyright © 2023 The Author(s)
First Published:First published in Advances in Neural Information Processing Systems 36 (NeurIPS 2023)
Publisher Policy:Reproduced in accordance with the publisher copyright policy
Related URLs:

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Project Code
Award No
Project Name
Principal Investigator
Funder's Name
Funder Ref
Lead Dept
QuantIC - The UK Quantum Technoogy Hub in Quantum Enhanced Imaging
Miles Padgett
EP/T00097X/1
P&S - Physics & Astronomy
Exploiting Closed-Loop Aspects in Computationally and Data Intensive Analytics
Roderick Murray-Smith
EP/R018634/1
Computing Science
Quantum-Inspired Imaging for Remote Monitoring of Health & Disease in Community Healthcare
Jonathan Cooper
EP/T021020/1
ENG - Biomedical Engineering
DTP 2018-19 University of Glasgow
Mary Beth Kneafsey
EP/R513222/1
MVLS - Education Hub

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